bertelsen's integration [16 articles] Export

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	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68. by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin posted to statistical ontology methodology interpretation integration disease associations by bertelsen on 2009-11-19 21:44:42 as along with 9 people and 1 group jfr kaarsinogen ruichu guhjy sobolevnrm mikel_egana allysonlister fgibson dullhunk baker-group
	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3067-3089. by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to systems-biology review physiology pathways networks multi-scale molecular modularity models integration complexity by bertelsen on 2009-11-18 20:26:07 as along with 2 people aviad_work cswinburne
	An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer. [My Copy] Breast cancer research : BCR, Vol. 11, No. 4. (28 July 2009), R55. by Andrea H. Bild, Joel S. Parker, Adam M. Gustafson, et al.Chaitanya R. Acharya, Katherine A. Hoadley, Carey Anders, P. Kelly Marcom, Lisa A. Carey, Anil Potti, Joseph R. Nevins, Charles M. Perou posted to tumour therapy phenotype pathway-analysis integration gene-expression drug-discovery chemotherapy cancer by bertelsen on 2009-10-06 21:37:06 as along with 2 people ptrobajo srp33
	A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2658-2666. by A. Callegaro, D. Basso, S. Bicciato posted to gastric-cancer-group tumour transcription tool statistical sequence-analysis ontologies integration gene-expression expression chromosomal-localization chromosomal-expression cancer annotations by bertelsen on 2009-09-30 17:32:49 as
	EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (06 February 2009), 50. by Michael Dondrup, Stefan P. Albaum, Thasso Griebel, et al.Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane K. Kleindt, Helge Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann posted to tool standard software microarray miame mage integration data analysis by bertelsen on 2009-09-30 17:22:13 as along with 4 people and 1 group barriot guhjy cassj dswan Bioinformatics
	Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context. [My Copy] BMC bioinformatics, Vol. 8 (02 June 2007), 179. by Markus Weniger, Julia C. Engelmann, Jörg Schultz posted to webservices visualization tool software proteomics pathways metabolic integration genomics gene-expression functional-genomics analysis by bertelsen on 2009-09-28 15:54:07 as along with 10 people and 1 group barriot daforerog udivi GeeSharpMinor guhjy jfr rdiaz ealloza frohike fmenolascina BioinfoCIPF
	Pathways to the analysis of microarray data. [My Copy] Trends in biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435. by R. Keira Curtis, Matej Oresic, Antonio Vidal-Puig posted to tool review pathways pathway-analysis microarray integration gene-expression enrichment-analysis analysis by bertelsen on 2009-09-27 20:16:12 as along with 11 people and 2 groups thomaskelder udivi AlexanderPico jfr saman_vp snuppepuppan textoris Ayest tardigrade ealloza heliopais ConklinLab BioinfoCIPF
	An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by Min Xu, Ming-Chih C. Kao, Juan Nunez-Iglesias, Joseph R. Nevins, Mike West, Xianghong Jasmine J. Zhou posted to topological phenotype pathways network modules microarray methodology integrative integration information functional-genomics disease data-integration cancer by bertelsen on 2009-09-15 20:56:41 as along with 4 people guhjy Zephyrus cswinburne jfr
	A module map showing conditional activity of expression modules in cancer [My Copy] Nature Genetics In Nat Genet, Vol. 36, No. 10. (26 September 2004), pp. 1090-1098. by Eran Segal, Nir Friedman, Daphne Koller, Aviv Regev posted to tumors therapeutic prognostic modules microarray integration gene-expression diagnostic cancer by bertelsen on 2009-09-15 20:51:43 as along with 8 people and 1 group roys ipark-kaist saman_vp lwaldron jimineep ladygoat balajis nirfriedman CGREL
	Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts. [My Copy] PLoS computational biology, Vol. 5, No. 7. (31 July 2009), e1000450. by Jiao Li, Xiaoyan Zhu, Jake Yue Y. Chen posted to molecular-connectivity-map therapeutic systems-biology networks molecular mining interactions integration gene-expression functional-genomics drug-discovery drug disease computational-biology biomolecular abstracts by bertelsen on 2009-09-15 19:51:37 as along with 8 people and 2 groups ptrobajo apocapoc andrewclegg NickFurnham guhjy kshameer mingzhi frohike Journal picks Orengo Group Journal Picks
	Global mapping of pharmacological space [My Copy] Nature Biotechnology, Vol. 24, No. 7. (13 July 2006), pp. 805-815. by Gaia V. Paolini, Richard H. B. Shapland, Willem P. van Hoorn, Jonathan S. Mason, Andrew L. Hopkins posted to structure probabilistic pharmacological mapping integration global drug-discovery chemical by bertelsen on 2009-09-15 19:24:30 as along with 12 people and 1 group sameersoi superpyrin richardbickerton ramensky Yanno BragilMassoud guhjy kuhn bicko caporaso allmensch jerome_ucsf_slb biomedical-nlp
	Genome and proteome annotation: organization, interpretation and integration [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 31. (6 February 2009), pp. 129-147. by Gabrielle A. Reeves, David Talavera, Janet M. Thornton posted to proteome organization interpretation integration high-throughput genome data-integration data bioinformatics annotation by bertelsen on 2009-09-05 21:20:29 as along with 7 people akiii operon richardbickerton Thaverkamp druvus dullhunk guhjy
	Gene regulatory network inference: Data integration in dynamic models—A review [My Copy] Biosystems, Vol. 96, No. 1. (27 April 2009), pp. 86-103. by Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke posted to systems-biology review regulation network models integration inference dynamic data-integration by bertelsen on 2009-09-03 16:44:18 as along with 7 people nicholasflann antonkratz greg guhjy mjoach sjung allysonlister
	Biological knowledge management: the emerging role of the Semantic Web technologies [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 392-407. by Erick Antezana, Martin Kuiper, Vladimir Mironov posted to bioinformatics biology integration knowledge-based management ontology review semantic-web systems-biology by bertelsen on 2009-07-22 23:30:06 as along with 15 people jfr jmuhlich guhjy artaban421 cmzmasek pharmdoc lmichan kshameer sobolevnrm dansullivanblk allysonlister mikel_egana dullhunk fgibson druvus
	Modeling cancer: integration of "omics" information in dynamic systems. [My Copy] Journal of bioinformatics and computational biology, Vol. 5, No. 4. (August 2007), pp. 977-986. by B. Stransky, J. Barrera, L. Ohno-Machado, S. J. De Souza posted to cancer dynamic integration modeling systems-biology by bertelsen on 2009-06-15 16:14:33 as
	FiEstAS sampling—a Monte Carlo algorithm for multidimensional numerical integration [My Copy] Computer Physics Communications, Vol. 179, No. 12. (15 December 2008), pp. 881-887. by Y. Ascasibar posted to algorithm integration mcmc multidimensional numerical parameter-degeneracy sampling by bertelsen on 2009-03-30 15:29:38 as

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microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	98
bayesian	94
cancer	78
networks	59
expression	59
affymetrix	48
software	48
gene	47
annotation	45
functional-genomics	44
tool	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	32
disease	29
modeling	29
pathway	29
models	28
genechip	27
rna	27
polyadenylation	26
human	26
gene-regulation	25
drug-discovery	25
multi-scale	24
oligonucleotide	24
clustering	24
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
probability	20
mrna	20
transcription	20
differential	20
molecular	20
factor-analysis	19
database	19
dynamic	19
stochastic	18
integrative	18
probe-level	18
simulation	18
mathematical	18
chemical	17
probabilistic	17
structure	17
kinetic	16
function	16
nonparametric	16
integration	16
dirichlet-process	16
computational	16
statistical	15
drug	15
comparison	15
sequence	15
genome	15
framework	15
genomics	15
r	15
algorithm	15
high-throughput	15
sampling	15
prediction	15
theory	15
experiment	15
python	14
gastric	14
regression	14
protein	14
complexity	14
biochemical-systems-theory	14
noise	14
enrichment-analysis	14
normalization	14
go	13
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personalized-medicine	13
therapy	13
pathways	13
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mirna	13
array	13
phenotype	13
bioconductor	13
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latent	12
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tumour	11
computational-biology	11
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3-utr	9
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insilico	9
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dna	9
cell-biology	9
multiple	9
biophysics	9
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utr	8
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methods	8
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ica	8
systemic-computation	8
rnai	8
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upt	6
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primary	6
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graphs	6
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time	5
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membrane	5
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gibbs	5
false	5
physical	5
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ode	5
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binfbib	5
cell-cycle	5
apoptosis	5
synthesis	5
nested	4
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dynamical-systems	4
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signals	4
filtering	4
inhibitors	4
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circuits	4
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decay	4
web	4
entropy	4
prognosis	4
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signatures	4
survey	4
biomolecular	4
literature	4
inner-ear	4
knowledge-based	4
co-regulation	4
animals	4
pharmacogenomic	4
mice	4
high-dimensional	4
endolymphatic-sac	4
cage	4
gastric-cancer-group	4
diversity	4
tissue-specific	4
steady-state	4
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exons	4
motif	4
global	4
physics	4
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ordinal	4
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5-utr	4
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post-transcriptional	4
mixtures	4
toxoplasma	4
interface	4
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fdr	3
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chemical-master-equation	3
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interference	3
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correlation	3
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space	2
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wikipedia	2
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biopython	2
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anatomy	2
deterministic	2
constraint-based-modelling	2
vector	2
rate-law	2
gamma	2
threshold	2
pharmacogenomics	2

bertelsen's integration [16 articles] Export

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