bertelsen's integrative [18 articles] Export

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	Integrative analysis of the cancer transcriptome [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S31-S37. by Daniel R. Rhodes, Arul M. Chinnaiyan posted to transcriptome microarray integrative cancer analysis by bertelsen on 2009-10-06 23:46:47 as along with 8 people and 2 groups daforerog cswinburne aalibes textoris ealloza shikin waghsk srp33 BioinfoCIPF GeneGo
	Modeling Cancer Progression via Pathway Dependencies [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008), e28. by Elena J. Edelman, Justin Guinney, Jen-Tsan Chi, Phillip G. Febbo, Sayan Mukherjee posted to gastric-cancer-group treatment progression prognosis pathway modelling microarray mechanism interpretation integrative etiology diagnosis dependence cancer by bertelsen on 2009-10-04 00:30:01 as along with 6 people ptrobajo wei aviad_work ipark-kaist bootsy jfr
	The Virtual Kidney: an eScience interface and Grid portal [My Copy] Physical and Engineering Sciences, Vol. 367, No. 1896. (13 June 2009), pp. 2141-2159. by Peter J. Harris, Rajkumar Buyya, Xingchen Chu, et al.Tom Kobialka, Ed Kazmierczak, Robert Moss, William Appelbe, Peter J. Hunter, S. Randall Thomas posted to visualization systems-biology simulation physiology multi-scale model kidney integrative grid-computing experimental-design database computational-biology by bertelsen on 2009-09-20 22:22:13 as
	A strategy for integrative computational physiology. [My Copy] Physiology (Bethesda, Md.), Vol. 20 (October 2005), pp. 316-325. by Peter Hunter, Poul Nielsen posted to systems-biology review physiology methodology integrative by bertelsen on 2009-09-20 21:20:36 as along with 1 person danlea
	An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by Min Xu, Ming-Chih C. Kao, Juan Nunez-Iglesias, Joseph R. Nevins, Mike West, Xianghong Jasmine J. Zhou posted to topological phenotype pathways network modules microarray methodology integrative integration information functional-genomics disease data-integration cancer by bertelsen on 2009-09-15 20:56:41 as along with 4 people guhjy Zephyrus cswinburne jfr
	Towards whole-organ modelling of tumour growth [My Copy] Progress in Biophysics and Molecular Biology, Vol. 85, No. 2-3. (July 2004), pp. 451-472. by T. Alarcon posted to tumour-growth review organ multi-scale modelling integrative drug-delivery cancer by bertelsen on 2009-09-06 20:04:17 as along with 1 person glyg
	Towards a Grid infrastructure to support integrative approaches to biological research [My Copy] Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 363, No. 1833. (15 August 2005), pp. 1829-1841. by D. J. Gavaghan, A. C. Simpson, S. Lloyd, D. F. Mac Randal, D. R. S. Boyd posted to systems-biology modelling mathematical integrative grid-computing grid e-science computational-biology biology by bertelsen on 2009-09-06 16:07:35 as
	Integration from proteins to organs: the Physiome Project. [My Copy] Nature reviews. Molecular cell biology, Vol. 4, No. 3. (March 2003), pp. 237-243. by Peter J. Hunter, Thomas K. Borg posted to systems-biology review multi-scale integrative hypothesis human framework biophysics biochemical anatomy by bertelsen on 2009-09-05 10:51:25 as along with 2 people jonathancooper danlea
	Modelling biological complexity: a physical scientist's perspective [My Copy] Journal of The Royal Society Interface, Vol. 2, No. 4. (22 September 2005), pp. 267-280. by Peter V. Coveney, Philip W. Fowler posted to systems-biology systemic-computation simulation self-organization physical networks multi-scale modelling methodology integrative hybrid hierarchical emergent-properties computational-biology complexity biology by bertelsen on 2009-09-04 20:25:36 as along with 6 people jonathancooper Scis0000002 PaulSherwood6 paulschlesinger jjray danscott
	Systems biology model databases and resources. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 223-236. by Carel van Gend, Jacky L. Snoep posted to systems-biology resource models kinetic integrative databases analysis by bertelsen on 2009-09-03 18:51:05 as along with 1 person VGreiff
	Multiscale agent-based cancer modeling [My Copy] Journal of Mathematical Biology, Vol. 58, No. 4. (1 April 2009), pp. 545-559. by Le Zhang, Zhihui Wang, Jonathan A. Sagotsky, Thomas S. Deisboeck posted to tumor systems-biology systemic-computation simulation network multi-scale modeling integrative insilico cancer agent-based by bertelsen on 2009-08-27 13:14:53 as along with 1 person frohike
	Integrative mathematical oncology [My Copy] Nat Rev Cancer, Vol. 8, No. 3. (March 2008), pp. 227-234. by Alexander R. A. Anderson, Vito Quaranta posted to oncogenesis modelling mechanism mathematical integrative cancer by bertelsen on 2009-08-26 22:47:03 as along with 2 people jfr guhjy
	Bayesian sparse hidden components analysis for transcription regulation networks. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 6. (15 March 2006), pp. 739-746. by Chiara Sabatti, Gareth M. James posted to bayesian factor-analysis gene-expression integrative networks regulation sparse systems-biology transcription by bertelsen on 2009-08-10 00:27:12 as along with 4 people engelhardt lp2 hms edwardmorrissey
	Integrative genomics identifies RAB23 as an invasion mediator gene in diffuse-type gastric cancer. [My Copy] Cancer research, Vol. 68, No. 12. (15 June 2008), pp. 4623-4630. by Q. Hou, Y. H. Wu, H. Grabsch, et al.Y. Zhu, S. H. Leong, K. Ganesan, D. Cross, L. K. Tan, J. Tao, V. Gopalakrishnan, B. L. Tang, O. L. Kon, P. Tan posted to cancer gastric genomics integrative by bertelsen on 2009-07-12 22:59:23 as
	Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1874-1880. by H. Li, M. Zhan posted to analysis integrative microarray modules regulation transcription-factor by bertelsen on 2009-06-13 11:59:37 as along with 5 people TRHvidsten guhjy jfr icecrown ealloza
	Do two mutually exclusive gene modules define the phenotypic diversity of mammalian smooth muscle? [My Copy] Molecular Genetics and Genomics, Vol. 280, No. 2. (1 August 2008), pp. 127-137. by Erik Larsson, Sean Mclean, Robert Mecham, Per Lindahl, Sven Nelander posted to diversity gene-expression gene-modules integrative mammalian modular muscle phenotype transcriptome by bertelsen on 2009-06-07 19:56:25 as
	Systems biology, integrative biology, predictive biology. [My Copy] Cell, Vol. 121, No. 4. (20 May 2005), pp. 505-506. by Edison T. Liu posted to integrative review systems-biology by bertelsen on 2009-06-03 23:31:01 as along with 4 people lpfernandes LeightonP wnpx biosv
	Integrative analysis of cancer gene expression studies using Bayesian latent factor modelling [My Copy] Annals of Applied Statistics (2009) by D. Merl, Lin, J. T. Chi, M. West posted to analysis bayesian cancer gene-expression integrative latent by bertelsen on 2009-06-01 02:14:09 as

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microarray	223
analysis	129
review	126
gene-expression	124
systems-biology	95
bayesian	92
cancer	78
expression	59
networks	58
affymetrix	48
gene	46
annotation	44
functional-genomics	44
software	44
biology	42
tool	42
model	40
network	38
regulation	38
modelling	37
data	34
bioinformatics	31
disease	29
modeling	29
pathway	28
genechip	27
models	27
rna	27
human	26
polyadenylation	26
drug-discovery	25
clustering	24
multi-scale	24
oligonucleotide	24
gene-regulation	23
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
differential	20
molecular	20
mrna	20
probability	20
transcription	20
dynamic	19
factor-analysis	19
database	18
integrative	18
mathematical	18
probe-level	18
stochastic	18
chemical	17
probabilistic	17
simulation	17
dirichlet-process	16
function	16
integration	16
kinetic	16
nonparametric	16
structure	16
algorithm	15
comparison	15
computational	15
drug	15
experiment	15
genome	15
genomics	15
high-throughput	15
r	15
sampling	15
sequence	15
statistical	15
theory	15
complexity	14
enrichment-analysis	14
gastric	14
noise	14
normalization	14
prediction	14
python	14
regression	14
array	13
biochemical-systems-theory	13
bioconductor	13
classification	13
control	13
framework	13
go	13
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mirna	13
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personalized-medicine	13
phenotype	13
protein	13
statistics	13
therapy	13
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clinical	12
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latent	12
mechanism	12
modules	12
promoter	12
transcriptome	12
computational-biology	11
distribution	11
evolution	11
non-protein-coding	11
oncogenesis	11
quality	11
sparse	11
tumour	11
alternative	10
genetic	10
integrating	10
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modular	10
proteomics	10
quantitative	10
systems	10
test	10
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3-utr	9
biomedical	9
biophysics	9
cell-biology	9
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design	9
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discovery	9
dna	9
hypothesis	9
information	9
interactions	9
large-scale	9
machine-learning	9
method	9
methodology	9
multiple	9
quality-control	9
selection	9
s-system	9
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transcription-factor	9
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heterogeneity	8
hybridization	8
ica	8
insilico	8
linear	8
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methods	8
overview	8
rnai	8
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systemic-computation	8
time-series	8
transcripts	8
utr	8
agent-based	7
binary	7
development	7
drug-target	7
emergent-properties	7
infection	7
invivo	7
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multivariate	7
organization	7
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physiology	7
rats	7
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tiling	7
time-course	7
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webservices	7
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dynamics	6
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genetics	6
graphs	6
mammalian	6
matrix-factorization	6
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pathway-analysis	6
pattern	6
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primary	6
prior	6
processes	6
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reactions	6
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rna-seq	6
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upt	6
apoptosis	5
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bias	5
binfbib	5
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book	5
cell	5
cell-cycle	5
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dependence	5
encode	5
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error	5
eukaryotic	5
false	5
gaussian	5
gene-function	5
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gibbs	5
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import	5
invitro	5
kidney	5
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medical	5
membrane	5
metabolic-network	5
ncrna	5
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nonsense-mediated	5
normal	5
ontologies	5
optimization	5
pca	5
physical	5
process	5
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protein-expression	5
quality-assessment	5
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sensitivity	5
signal	5
simulations	5
splicing	5
synthesis	5
time	5
topological	5
treatment	5
truncated	5
unknown	5
variation	5
variational	5
5-utr	4
animals	4
approximation	4
biomolecular	4
cage	4
circuits	4
co-expression	4
co-regulation	4
decay	4
diversity	4
endolymphatic-sac	4
entropy	4
estimation	4
exons	4
exploratory	4
filtering	4
gastric-cancer-group	4
gene-set-analysis	4
global	4
graphical-modelling	4
grid	4
guide	4
high-dimensional	4
hybrid	4
inflammation	4
inhibitors	4
inner-ear	4
interface	4
knowledge-based	4
literature	4
local	4
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mechanistic	4
metabolic-control-analysis	4
mice	4
mining	4
mixtures	4
motif	4
nested	4
ode	4
ordinal	4
pharmacogenomic	4
philosophy	4
physics	4
post-transcriptional	4
power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
accuracy	3
adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
chromosomal-expression	3
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correlation	3
dataset	3
differential-equation	3
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dirichlet	3
distributions	3
dynamical-systems	3
enzyme	3
evaluation	3
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fdr	3
gene-circuits	3
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genes	3
genotyping	3
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hmm	3
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introduction	3
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repository	3
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resource	3
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signaling-system	3
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snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
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biopython	2
buffet	2
cdf	2
cell-migration	2
cell-population	2
cells	2
chromosome-wide	2
comment	2
community	2
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copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
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cytoplasmic	2
definition	2
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distance	2
dsrna	2
epithelial	2
evidence	2
exon	2
false-discovery	2
for:birte	2
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game-theory	2
gamma	2
generative	2
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grid-computing	2
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lung	2
mage	2
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matroid	2
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molecular-connectivity-map	2
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numerical	2
octave	2
oncogene-addiction	2
opensource	2
organ	2
parallel	2
parts	2
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perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
preprocessing	2

bertelsen's integrative [18 articles] Export

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