CiteULike: bertelsen's interpretation [13 articles]

	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68. by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin posted to statistical ontology methodology interpretation integration disease associations by bertelsen on 2009-11-19 21:44:42 as along with 9 people and 1 group jfr kaarsinogen ruichu guhjy sobolevnrm mikel_egana allysonlister fgibson dullhunk baker-group
	Modeling Cancer Progression via Pathway Dependencies [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008), e28. by Elena J. Edelman, Justin Guinney, Jen-Tsan Chi, Phillip G. Febbo, Sayan Mukherjee posted to gastric-cancer-group treatment progression prognosis pathway modelling microarray mechanism interpretation integrative etiology diagnosis dependence cancer by bertelsen on 2009-10-04 00:30:01 as along with 6 people ptrobajo wei aviad_work ipark-kaist bootsy jfr
	Methods for interpreting lists of affected genes obtained in a DNA microarray experiment. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Jakob Hedegaard, Cristina Arce, Silvio Bicciato, et al.Agnès Bonnet, Bart Buitenhuis, Melania Collado-Romero, Lene N. Conley, Magali Sancristobal, Francesco Ferrari, Juan J. Garrido, Martien Am A. Groenen, Henrik Hornshøj, Ina Hulsegge, Li Jiang, Angeles Jiménez-Marín, Arun Kommadath, Sandrine Lagarrigue, Jack Am A. Leunissen, Laurence Liaubet, Pieter Bt B. Neerincx, Haisheng Nie, Jan van der Poel, Dennis Prickett, María Ramirez-Boo, Johanna Mj M. Rebel, Christèle Robert-Granié, Axel Skarman, Mari A. Smits, Peter Sørensen, Gwenola Tosser-Klopp, Michael Watson posted to microarray interpretation gene-expression enrichment-analysis biology annotation by bertelsen on 2009-09-27 19:53:52 as
	Genome and proteome annotation: organization, interpretation and integration [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 31. (6 February 2009), pp. 129-147. by Gabrielle A. Reeves, David Talavera, Janet M. Thornton posted to proteome organization interpretation integration high-throughput genome data-integration data bioinformatics annotation by bertelsen on 2009-09-05 21:20:29 as along with 6 people operon richardbickerton Thaverkamp druvus dullhunk guhjy
	Potential misinterpretation of data on differential gene expression in normal and malignant cells in vitro [My Copy] Brief Funct Genomic Proteomic, Vol. 7, No. 4. (1 July 2008), pp. 322-326. by Xiaofeng Ye, Reuben Lotan posted to cancer cell-lines data differential gene-expression interpretation invitro microarray by bertelsen on 2009-06-08 11:59:26 as
	GATHER: a systems approach to interpreting genomic signatures. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 23. (1 December 2006), pp. 2926-2933. by J. T. Chang, J. R. Nevins posted to enrichment-analysis gene-function genomics interpretation systems-biology by bertelsen on 2009-06-03 22:58:15 as along with 4 people frohike guhjy jfr minostro
	On the Interpretation of Factor Analysis [My Copy] No. 0502003. (February 2005) by J. S. Armstrong posted to factor-analysis interpretation by bertelsen on 2009-05-31 20:30:35 as
	Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000029. by Karthik Devarajan posted to biology computation high-throughput interpretation matrix-factorization nonnegative parts review tool by bertelsen on 2009-03-10 13:54:48 as along with 14 people zufar kshameer svozil rdiaz ptrobajo jfr aramesh2 roys bayesian bpcusack cabbagesofdoom luispedro guhjy mikaelhuss
	Interpreting microarray results with gene ontology and MeSH. [My Copy] Methods Mol Biol, Vol. 377 (2007), pp. 223-242. by J. D. Osborne, L. J. Zhu, S. M. Lin, W. A. Kibbe posted to annotation interpretation microarray ontology review by bertelsen on 2009-03-07 21:47:20 as
	The Positive False Discovery Rate: A Bayesian Interpretation and the q-Value (2003) [My Copy] The Annals of Statistics, Vol. 31, No. 6. (2003), pp. 2013-2035. by John D. Storey posted to bayesian discovery false hypothesis interpretation microarray multiple test by bertelsen on 2009-02-20 15:13:37 as along with 1 person kynn
	Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (11 June 2007), 194. by Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li posted to annotation interpretation microarray probe transcript by bertelsen on 2008-06-10 21:07:26 as along with 3 people guhjy jfr heliopais
	Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips [My Copy] BMC Bioinformatics, Vol. 8 (15 January 2007), 13. by Maria A. Stalteri, Andrew P. Harrison posted to affymetrix genechip interpretation mapping probe by bertelsen on 2008-04-20 23:38:14 as along with 8 people sebastien_vigneau guhjy jfr gpalidwor hpiwowar frohike ghattem heliopais
	Accounting for probe-level noise in principal component analysis of microarray data. [My Copy] Bioinformatics, Vol. 21, No. 19. (2005), pp. 3748-54. by G. Sanguinetti, M. Milo, M. Rattray, N. D. Lawrence posted to algorithms analysis analysismethods array bayesian binfbib component data expression gene genetic import interpretation models oligonucleotide principal processes profilingmethods sequence software statistical stochastic by bertelsen on 2007-06-19 17:46:12 as

bertelsen's interpretation [13 articles] Export Sort

bertelsen's tags

microarray	225
analysis	131
gene-expression	131
review	126
systems-biology	98
bayesian	95
cancer	78
networks	59
expression	59
software	49
affymetrix	48
gene	47
annotation	45
tool	44
functional-genomics	44
biology	42
model	40
network	40
modelling	39
regulation	38
data	34
bioinformatics	32
disease	30
modeling	29
pathway	29
models	28
genechip	27
rna	27
polyadenylation	26
human	26
gene-regulation	25
drug-discovery	25
multi-scale	24
oligonucleotide	24
clustering	24
ontology	23
differential	23
biochemical	22
probe	22
database	21
inference	21
transcription	20
probability	20
degradation	20
molecular	20
mrna	20
dynamic	19
factor-analysis	19
stochastic	18
probe-level	18
simulation	18
integrative	18
mathematical	18
chemical	17
statistical	17
probabilistic	17
framework	17
structure	17
dirichlet-process	16
nonparametric	16
drug	16
kinetic	16
enrichment-analysis	16
integration	16
computational	16
function	16
theory	15
sequence	15
prediction	15
comparison	15
genomics	15
high-throughput	15
r	15
experiment	15
sampling	15
genome	15
normalization	15
algorithm	15
python	14
complexity	14
statistics	14
regression	14
gene-set-analysis	14
gastric	14
pathways	14
noise	14
biochemical-systems-theory	14
protein	14
interpretation	13
phenotype	13
bioconductor	13
personalized-medicine	13
therapy	13
go	13
classification	13
array	13
control	13
mirna	13
mechanism	12
transcriptome	12
data-integration	12
modules	12
evolution	12
hierarchical	12
latent	12
algorithms	12
clinical	12
promoter	12
sparse	11
test	11
modular	11
oncogenesis	11
non-protein-coding	11
quality	11
computational-biology	11
alternative	11
tumour	11
distribution	11
hypothesis	10
integrating	10
systems	10
mixture	10
proteomics	10
interactions	10
genetic	10
biomedical	10
method	10
mcmc	10
uncertainty	10
quantitative	10
diagnostic	10
transcription-factor	9
design	9
biophysics	9
large-scale	9
visualization	9
machine-learning	9
overview	9
3-utr	9
information	9
s-system	9
methodology	9
therapeutic	9
dna	9
multiple	9
cell-biology	9
discovery	9
insilico	9
pathway-analysis	9
selection	9
quality-control	9
hybridization	8
utr	8
background	8
methods	8
systemic-computation	8
specificity	8
synthetic-biology	8
time-series	8
transcripts	8
heterogeneity	8
measure	8
linear	8
experimental-design	8
rnai	8
ica	8
time-course	7
infection	7
drug-target	7
agent-based	7
tiling	7
nonlinear	7
physiology	7
translation	7
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invivo	7
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organization	7
profiles	7
development	7
webservices	7
emergent-properties	7
rats	7
multivariate	7
pathology	7
ontologies	7
primary	6
graphs	6
matrix-factorization	6
processes	6
summary	6
metabolomics	6
epigenetic	6
sensitivity	6
cdna	6
upt	6
computation	6
reverse-engineering	6
dynamics	6
scientific	6
rna-seq	6
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binfbib	5
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protein-expression	5
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book	5
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dependence	5
comparative	5
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gastric-cancer-group	4
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tissue-specific	4
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co-expression	4
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sequence-analysis	4
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approximation	4
hybrid	4
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survey	4
knowledge-based	4
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graphical-modelling	4
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entropy	4
dynamical-systems	4
mechanistic	4
5-utr	4
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biomolecular	4
gsea	4
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circuits	4
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cell-lines	3
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component	3
chromatin	3
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performance	3
characteristics	3
adjustment	3
matrix	2
heart	2
nucleic	2
kullback-leibler	2
programming	2
fractal	2
stem-cells	2
subcellular	2
sage	2
model-organism	2
variational-inference	2
chromosome-wide	2
parts	2
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nonequilibrium	2
reasoning	2
lasso	2
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small	2
cells	2
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t-cell	2
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t-test	2
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set	2
articles	2
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gamma	2
plant	2
methylation	2
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cross-hybridization	2
regulatory-modules	2
isoform	2
vector	2
knowledgebase	2
comment	2
exon	2
3	2
definition	2
probit	2
for:birte	2
cdf	2
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epithelial	2
wikipedia	2
biopython	2
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game-theory	2
benchmark	2
two-color	2
target	2
density	2
internet	2
matroid	2
pipelines	2
distance	2
miame	2
rma	2
lung	2
mismatch	2
poly	2
cell-population	2
cytoplasmic	2
indian	2
difference	2
false-discovery	2
mass_spectroscopy	2
phenome	2
octave	2
p-bodies	2
plausibility	2