bertelsen's molecular [20 articles] Export

Recent papers added to bertelsen's library classified by the tag molecular. You can also see everyone's molecular.

	Simulating non-small cell lung cancer with a multiscale agent-based model [My Copy] Theoretical Biology and Medical Modelling, Vol. 4, No. 1. (21 December 2007), 50. by Zhihui Wang, Le Zhang, Jonathan Sagotsky, Thomas Deisboeck posted to spatio-temporal simulation signal-transduction phenotype pathway multi-scale molecular modelling lung intracellular epidermal_growth_factor dynamics chemotactic cell-migration cancer agent-based by bertelsen on 2009-11-23 21:45:02 as
	The Proteomic Code: a molecular recognition code for proteins [My Copy] Theoretical Biology and Medical Modelling, Vol. 4, No. 1. (13 November 2007), 45. by Jan Biro posted to proteomic protein physico_chemical molecular interactions by bertelsen on 2009-11-23 21:38:36 as along with 2 people VGreiff smit2jam
	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3067-3089. by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to systems-biology review physiology pathways networks multi-scale molecular modularity models integration complexity by bertelsen on 2009-11-18 20:26:07 as along with 2 people aviad_work cswinburne
	Bayesian variable selection in multinomial probit models to identify molecular signatures of disease stage. [My Copy] Biometrics, Vol. 60, No. 3. (September 2004), pp. 812-819. by Naijun Sha, Marina Vannucci, Mahlet G. Tadesse, et al.Philip J. Brown, Ilaria Dragoni, Nick Davies, Tracy C. Roberts, Andrea Contestabile, Mike Salmon, Chris Buckley, Francesco Falciani posted to variable_selection signatures probit multinomial molecular mixtures mcmc functional-genomics bayesian by bertelsen on 2009-11-18 20:23:05 as along with 1 person frohike
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to transcription signatures processes networks multi-scale molecular modules modular models microarray mechanistic gene-regulation disease comparative cancer by bertelsen on 2009-10-05 15:56:21 as along with 13 people and 1 group chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo
	Building disease-specific drug-protein connectivity maps from molecular interaction networks and PubMed abstracts. [My Copy] PLoS computational biology, Vol. 5, No. 7. (31 July 2009), e1000450. by Jiao Li, Xiaoyan Zhu, Jake Yue Y. Chen posted to molecular-connectivity-map therapeutic systems-biology networks molecular mining interactions integration gene-expression functional-genomics drug-discovery drug disease computational-biology biomolecular abstracts by bertelsen on 2009-09-15 19:51:37 as along with 8 people and 2 groups ptrobajo apocapoc andrewclegg NickFurnham guhjy kshameer mingzhi frohike Journal picks Orengo Group Journal Picks
	Multiscale modeling of biomolecular systems: in serial and in parallel. [My Copy] Current opinion in structural biology, Vol. 17, No. 2. (April 2007), pp. 192-198. by Gary S. Ayton, Will G. Noid, Gregory A. Voth posted to systems-biology systems structural-biology review multi-scale molecular models modelling methods hybrid hierarchical bridges biophysics biomolecular by bertelsen on 2009-09-05 11:21:29 as along with 5 people jonathancooper Elena_Zubova RamuAnandakrishnan aqeel choonpeng
	Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises. [My Copy] Mathematical biosciences, Vol. 211, No. 2. (February 2008), pp. 342-355. by Bor-Sen S. Chen, Wei-Sheng S. Wu posted to stochastic robust noise networks molecular gene-circuits filtering design circuits by bertelsen on 2009-09-03 18:43:53 as along with 2 people jjray austin
	Apoptosis and its modulation during infection with Toxoplasma gondii: molecular mechanisms and role in pathogenesis. [My Copy] Current topics in microbiology and immunology, Vol. 289 (2005), pp. 219-237. by C. G. Lüder, U. Gross posted to toxoplasma review molecular mechanism infection apoptosis by bertelsen on 2009-08-25 23:49:16 as
	Highly parallel identification of essential genes in cancer cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20380-20385. by Biao Luo, Hiu W. Cheung, Aravind Subramanian, et al.Tanaz Sharifnia, Michael Okamoto, Xiaoping Yang, Greg Hinkle, Jesse S. Boehm, Rameen Beroukhim, Barbara A. Weir, Craig Mermel, David A. Barbie, Tarif Awad, Xiaochuan Zhou, Tuyen Nguyen, Bruno Piqani, Cheng Li, Todd R. Golub, Matthew Meyerson, Nir Hacohen, William C. Hahn, Eric S. Lander, David M. Sabatini, David E. Root posted to cancer characteristics integrating mechanism molecular oncogenesis by bertelsen on 2009-07-18 13:27:54 as along with 5 people ilyashl kiekyon askrajiv myzhang jfr
	Endolymphatic sac tumours and von Hippel-Lindau disease - case report, molecular analysis and histopathological characterization. [My Copy] Folia neuropathologica / Association of Polish Neuropathologists and Medical Research Centre, Polish Academy of Sciences, Vol. 47, No. 1. (2009), pp. 75-80. by K. Krzysztolik, C. Cybulski, L. Sagan, P. Nowacki, J. Lubiński posted to analysis disease endolymphatic-sac molecular tumor by bertelsen on 2009-07-14 17:18:12 as
	Revisiting the Krogh Principle in the post-genome era: caenorhabditis elegans as a model system for integrative physiology research. [My Copy] The Journal of experimental biology, Vol. 210, No. Pt 9. (1 May 2007), pp. 1622-1631. by K. Strange posted to c-elegans functional-genomics genetics model-organism molecular physiology systems-biology by bertelsen on 2009-07-08 23:10:35 as along with 3 people and 1 group thegoose2 tharris guhjy C. elegans / WormBase
	Molecular characteristics of eight gastric cancer cell lines established in Japan [My Copy] Pathology International (October 2000), pp. 767-777. by Hiroshi Yokozaki posted to cancer cell-lines characteristics gastric molecular review by bertelsen on 2009-06-18 22:37:31 as
	Multisite protein phosphorylation – from molecular mechanisms to kinetic models [My Copy] FEBS Journal, Vol. 276, No. 12. (2009), pp. 3177-3198. by Carlos Salazar, Thomas Hofer posted to function kinetic mechanism models molecular phosphorylation protein review by bertelsen on 2009-06-12 19:53:47 as along with 1 person mhellmann
	A plea for more theory in molecular biology. [My Copy] Ernst Schering Research Foundation workshop, No. 61. (2007), pp. 117-137. by O. Wolkenhauer, M. Mesarović, P. Wellstead posted to mathematical molecular systems-biology theory by bertelsen on 2009-06-07 18:31:35 as along with 1 person Scis0000002
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted to biology cell-biology modular molecular by bertelsen on 2009-06-06 22:39:38 as along with 27 people and 8 groups antonkratz dagmar biomcgary poirel Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori carlk awooga tvdbulck vsausg dragonrez EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
	Biopython: freely available Python tools for computational molecular biology and bioinformatics [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1422-1423. by Peter J. A. Cock, Tiago Antao, Jeffrey T. Chang, et al.Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon posted to bioinformatics biology biopython computational molecular python software by bertelsen on 2009-05-04 09:13:14 as along with 38 people and 9 groups eesruiz Geknitics pekrau Sergey_gerbek hwright jfr karinaecomp applebyb klexa rdiaz FabienneGranier thegoose oteri cmzmasek jwm guhjy AlexBateman daforerog ltitodem Thaverkamp sobolevnrm psique dswan neils dullhunk Vincent_Rouilly gwallau brianb jorisslob svenrahmann jmeppley VGreiff sjcockell druvus jago kshameer operon svozil Systems_Biology Computational_Systems_Biology Structural Biology Group TorVergata Journal picks baker-group Bioinformatics Software-Architecture OER_Open_Educational_Resources Method_Engineering_Services
	Graphs in molecular biology. [My Copy] BMC bioinformatics, Vol. 8 Suppl 6 (2007) by Wolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman posted to biology graphs molecular r by bertelsen on 2008-04-29 19:52:47 as along with 7 people sockington daforerog leemond31 svozil guhjy jfr girschick
	A model of molecular interactions on short oligonucleotide microarrays. [My Copy] Nat Biotechnol, Vol. 21, No. 7. (July 2003), pp. 818-821. by L. Zhang, M. F. Miles, K. D. Aldape posted to interactions microarray model molecular oligonucleotide by bertelsen on 2008-04-29 10:13:20 as along with 4 people Hosna caseybrown nicholso talponer
	Molecular mechanisms of translational control. [My Copy] Nature reviews. Molecular cell biology, Vol. 5, No. 10. (October 2004), pp. 827-835. by F. Gebauer, M. W. Hentze posted to control mechanism molecular translation by bertelsen on 2008-04-21 21:43:33 as along with 1 person guhjy

Note: You may cite this page as: http://www.citeulike.org/user/bertelsen/tag/molecular

microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
expression	59
networks	59
affymetrix	48
gene	47
software	46
annotation	45
functional-genomics	44
tool	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	31
modeling	29
pathway	29
disease	29
models	28
rna	27
genechip	27
polyadenylation	26
human	26
drug-discovery	25
gene-regulation	25
clustering	24
oligonucleotide	24
multi-scale	24
ontology	23
biochemical	22
probe	22
inference	21
probability	20
differential	20
transcription	20
degradation	20
mrna	20
molecular	20
factor-analysis	19
dynamic	19
database	19
integrative	18
simulation	18
mathematical	18
stochastic	18
probe-level	18
probabilistic	17
chemical	17
structure	17
integration	16
function	16
kinetic	16
nonparametric	16
computational	16
dirichlet-process	16
statistical	15
genomics	15
experiment	15
sequence	15
high-throughput	15
theory	15
comparison	15
algorithm	15
drug	15
genome	15
sampling	15
r	15
complexity	14
enrichment-analysis	14
protein	14
framework	14
normalization	14
regression	14
prediction	14
python	14
noise	14
gastric	14
array	13
pathways	13
mirna	13
therapy	13
classification	13
statistics	13
personalized-medicine	13
bioconductor	13
interpretation	13
control	13
biochemical-systems-theory	13
go	13
phenotype	13
transcriptome	12
algorithms	12
clinical	12
latent	12
data-integration	12
hierarchical	12
mechanism	12
promoter	12
modules	12
non-protein-coding	11
tumour	11
computational-biology	11
distribution	11
oncogenesis	11
sparse	11
evolution	11
quality	11
integrating	10
systems	10
quantitative	10
test	10
mixture	10
mcmc	10
uncertainty	10
proteomics	10
genetic	10
modular	10
alternative	10
interactions	10
biomedical	10
transcription-factor	9
dna	9
multiple	9
visualization	9
large-scale	9
selection	9
diagnostic	9
biophysics	9
quality-control	9
hypothesis	9
s-system	9
information	9
methodology	9
cell-biology	9
machine-learning	9
discovery	9
insilico	9
3-utr	9
design	9
method	9
therapeutic	9
time-series	8
measure	8
transcripts	8
ica	8
linear	8
methods	8
experimental-design	8
background	8
overview	8
hybridization	8
systemic-computation	8
synthetic-biology	8
heterogeneity	8
rnai	8
utr	8
mapping	7
nonlinear	7
invivo	7
time-course	7
agent-based	7
infection	7
organization	7
translation	7
development	7
specificity	7
pathology	7
tiling	7
physiology	7
gene-set-analysis	7
multivariate	7
binary	7
ontologies	7
webservices	7
pathway-analysis	7
drug-target	7
rats	7
emergent-properties	7
mammalian	6
reactions	6
profiles	6
epigenetic	6
reverse-engineering	6
databases	6
cdna	6
pattern	6
upt	6
computation	6
dynamics	6
feature	6
computing	6
prior	6
scientific	6
thermodynamics	6
processes	6
splicing	6
metabolomics	6
application	6
sequencing	6
graphs	6
tumor	6
chip-chip	6
metabolic-network	6
pre-processing	6
genetics	6
summary	6
rna-seq	6
evolutionary-computation	6
primary	6
matrix-factorization	6
kidney	5
comparative	5
dependence	5
correction	5
membrane	5
import	5
error	5
encode	5
binfbib	5
book	5
sensitivity	5
genome-wide	5
simulations	5
apoptosis	5
variation	5
quantitative-trait-loci	5
invitro	5
process	5
normal	5
cell-cycle	5
physical	5
nonsense-mediated	5
nmd	5
medical	5
baysian	5
identification	5
cell	5
unknown	5
treatment	5
profiling	5
profilingmethods	5
truncated	5
signal	5
time	5
biomarker	5
ncrna	5
environment	5
gibbs	5
measurement	5
synthesis	5
eukaryotic	5
bias	5
pca	5
topological	5
protein-expression	5
optimization	5
quality-assessment	5
gaussian	5
gene-function	5
variational	5
localization	5
false	5
animals	4
sequence-analysis	4
pharmacogenomic	4
mice	4
decay	4
high-dimensional	4
endolymphatic-sac	4
cage	4
ode	4
gastric-cancer-group	4
signals	4
web	4
entropy	4
diversity	4
prognosis	4
mechanistic	4
tissue-specific	4
approximation	4
dynamical-systems	4
steady-state	4
signatures	4
grid	4
nested	4
co-expression	4
mining	4
survey	4
philosophy	4
exons	4
filtering	4
motif	4
global	4
map	4
physics	4
graphical-modelling	4
ordinal	4
signature	4
5-utr	4
power-laws	4
exploratory	4
biomolecular	4
standard	4
transcript	4
transformation	4
post-transcriptional	4
mixtures	4
toxoplasma	4
interface	4
inhibitors	4
inflammation	4
literature	4
inner-ear	4
knowledge-based	4
metabolic-control-analysis	4
local	4
co-regulation	4
circuits	4
guide	4
hybrid	4
estimation	4
dirichlet	3
differentiation	3
model-selection	3
random	3
multinomial	3
resource	3
differential-equation	3
structural-biology	3
dataset	3
chromosomal-expression	3
evaluation	3
chip-seq	3
pattern-recognition	3
affinity	3
component	3
humans	3
repository	3
chemotherapy	3
management	3
snp	3
chromatin	3
fdr	3
generalized	3
distributions	3
metabolic	3
signal-transduction	3
amplification	3
associations	3
nuclear	3
bacteria	3
metastatic	3
identifiability	3
parasitology	3
performance	3
characteristics	3
robust	3
languages	3
adjustment	3
interference	3
correlation	3
combinatorial	3
automatic	3
renormalization-group-analysis	3
stochasticity	3
gene-circuits	3
tumorigenesis	3
affy	3
introduction	3
ranking	3
accuracy	3
nonnegative	3
assessment	3
unsupervised	3
semantic-web	3
enzyme	3
medicine	3
hmm	3
chemical-master-equation	3
reproducibility	3
polymerase	3
independence	3
exchangeability	3
stochastic-resonance	3
natural	3
regulators	3
genes	3
genotyping	3
beta	3
learning	3
perturbation	3
cell-lines	3
modularity	3
histological	3
signaling-system	3
calibration	3
analysismethods	3
alignment	3
resonance	3
cells	2
text-mining	2
sequential	2
target	2
foundations	2
stem-cells	2
rma	2
present_absent_call	2
exon	2
mutations	2
missing-value	2
cox-theorem	2
approximate	2
stress	2
mismatch	2
5	2
generative	2
homologous	2
translational-medicine	2
physiome	2
threshold	2
rate-law	2
false-discovery	2
constraint-based-modelling	2
primer	2
non-specific	2
difference	2
biopython	2
fractal	2
properties	2
gamma	2
poly	2
distance	2
vector	2
acid	2
saturation	2
benchmark	2
user-computer	2
regulatory-modules	2
knowledgebase	2
parts	2
plausibility	2
health	2
plant	2
indian	2
probit	2
miame	2
lung	2
matrix	2
memory	2
t-test	2
pipelines	2
community	2
set	2
buffet	2
mass_spectroscopy	2
copy-number-variation	2
variational-inference	2
phenome	2
cross-platform	2
kullback-leibler	2
nonequilibrium	2
dsrna	2
lasso	2
comment	2
deterministic	2
behaviour	2
perspective	2
heterogeneous	2
preprocessing	2
post-transcription	2
neuroscience	2
mage	2
3	2
cell-migration	2
subcellular	2
pharmacogenomics	2
organ	2
immune-system	2
opensource	2
p-bodies	2
molecular-connectivity-map	2
programming	2
mitochondria	2
chromosome-wide	2
approximations	2
epithelial	2
grid-computing	2
signaling-pathway	2
sage	2
cross-study	2
multi-target	2
proteome	2

bertelsen's molecular [20 articles] Export

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