bertelsen's networks [57 articles] Export

Recent papers added to bertelsen's library classified by the tag networks. You can also see everyone's networks.

	$My PDF mancardi_08_fractal.pdf$ Fractal parameters and vascular networks: facts & artifacts [My Copy] Theoretical Biology and Medical Modelling, Vol. 5, No. 1. (17 July 2008), 12. by Daniele Mancardi, Gianfranco Varetto, Enrico Bucci, Fabrizio Maniero, Caterina Guiot posted to vascular networks fractal by bertelsen on 2009-11-23 21:54:23 as along with 1 person nicholasflann
	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3067-3089. by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to systems-biology review physiology pathways networks multi-scale molecular modularity models integration complexity by bertelsen on 2009-11-18 20:26:07 as along with 2 people aviad_work cswinburne
	Discovery of Regulatory Elements is Improved by a Discriminatory Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (13 November 2009), e1000562. by Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh posted to transcription-factor regulatory networks motif gene-regulation discover by bertelsen on 2009-11-13 15:01:44 as along with 4 people davfre ptrobajo maximilianh TRHvidsten
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. [My Copy] Nature genetics, Vol. 34, No. 2. (11 June 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to regulatory-modules regulators regulation original networks module-networks modular gene-expression by bertelsen on 2009-10-06 23:03:41 as along with 26 people and 1 group chasmand stharward ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab
	A genomic strategy to elucidate modules of oncogenic pathway signaling networks. [My Copy] Molecular cell, Vol. 34, No. 1. (10 April 2009), pp. 104-114. by Jeffrey T. Chang, Carlos Carvalho, Seiichi Mori, et al.Andrea H. Bild, Michael L. Gatza, Quanli Wang, Joseph E. Lucas, Anil Potti, Phillip G. Febbo, Mike West, Joseph R. Nevins posted to signatures signal pathway-analysis pathway oncogenesis networks modules gene caner biochemical by bertelsen on 2009-10-06 22:27:02 as along with 8 people and 1 group jfr jmstat guhjy mspivako renatomilani fenghezi shikin roys Journal picks
	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to transcription signatures processes networks multi-scale molecular modules modular models microarray mechanistic gene-regulation disease comparative cancer by bertelsen on 2009-10-05 15:56:21 as along with 13 people and 1 group chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo
	Factor analysis for gene regulatory networks and transcription factor activity profiles. [My Copy] BMC bioinformatics, Vol. 8 (23 February 2007), 61. by Iosifina Pournara, Lorenz Wernisch posted to transcription-factor sparse networks gene-regulation gene-expression factor-analysis by bertelsen on 2009-09-30 17:58:28 as along with 9 people ptrobajo isimpson akastrin guhjy shigepong lp2 hms kyriakos heliopais
	A bottom-up approach to gene regulation. [My Copy] Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860. by Nicholas J. Guido, Xiao Wang, David Adalsteinsson, et al.David McMillen, Jeff Hasty, Charles R. Cantor, Timothy C. Elston, J. J. Collins posted to protein-expression promoter noise networks gene-regulation gene-expression by bertelsen on 2009-09-25 11:56:56 as along with 18 people and 2 groups genocad Scis0000002 raik rklancer snuppepuppan guhjy okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard nklee tmmurali Bioinformatics SynBioSys
	Bacteria as computers making computers [My Copy] FEMS Microbiology Reviews, Vol. 33, No. 1. (January 2009), pp. 3-26. by Antoine Danchin posted to systems-biology networks molecular_biology information gene-expression computation bacteria by bertelsen on 2009-09-21 16:05:46 as along with 6 people and 1 group MurphysLab marcio druvus Borelli jjray dbikard Synthetic Biology
	Cancer systems biology: exploring cancer-associated genes on cellular networks. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 64, No. 14. (July 2007), pp. 1752-1762. by E. Wang, A. Lenferink, M. O'Connor-McCourt posted to systems-biology review networks gene-expression cellular-networks cancer by bertelsen on 2009-09-15 21:18:24 as along with 3 people and 2 groups jfr ealloza diging_data BioinfoCIPF BTS-PT-AS-CS
	Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000450. by Jiao Li, Xiaoyan Zhu, Jake Y. Chen posted to molecular-connectivity-map therapeutic systems-biology networks molecular mining interactions integration gene-expression functional-genomics drug-discovery drug disease computational-biology biomolecular abstracts by bertelsen on 2009-09-15 19:51:37 as along with 8 people and 2 groups ptrobajo apocapoc andrewclegg NickFurnham guhjy kshameer mingzhi frohike Journal picks Orengo Group Journal Picks
	From the determination of complex reaction mechanisms to systems biology. [My Copy] Annual review of biochemistry, Vol. 77, No. 1. (2008), pp. 479-494. by John Ross posted to systems-biology review reactions reaction-systems networks mechanism complexity chemical biochemical by bertelsen on 2009-09-06 18:43:36 as along with 1 person guhjy
	Spontaneous emergence of modularity in cellular networks [My Copy] Journal of The Royal Society Interface, Vol. 5, No. 18. (6 January 2008), pp. 129-133. by Ricard V. SolÃ©, Sergi Valverde posted to robust organization networks modularity modular heterogeneous evolution emergent-properties by bertelsen on 2009-09-06 00:14:20 as along with 5 people and 2 groups karthikraman mattjb smgomez stefanoallesina mjoach ComplexAdaptiveSystems DSTO-CAS
	Strategies for the physiome project. [My Copy] Annals of biomedical engineering, Vol. 28, No. 8. (August 2000), pp. 1043-1058. by J. B. Bassingthwaighte posted to virtual_human systems-biology review quantitative physiology pathology networks multi-scale modules model human database complexity biochemical by bertelsen on 2009-09-04 21:00:17 as
	Modelling biological complexity: a physical scientist's perspective [My Copy] Journal of The Royal Society Interface, Vol. 2, No. 4. (22 September 2005), pp. 267-280. by Peter V. Coveney, Philip W. Fowler posted to systems-biology systemic-computation simulation self-organization physical networks multi-scale modelling methodology integrative hybrid hierarchical emergent-properties computational-biology complexity biology by bertelsen on 2009-09-04 20:25:36 as along with 6 people jonathancooper Scis0000002 PaulSherwood6 paulschlesinger jjray danscott
	Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises. [My Copy] Mathematical biosciences, Vol. 211, No. 2. (February 2008), pp. 342-355. by Bor-Sen S. Chen, Wei-Sheng S. Wu posted to stochastic robust noise networks molecular gene-circuits filtering design circuits by bertelsen on 2009-09-03 18:43:53 as along with 2 people jjray austin
	A systematic molecular circuit design method for gene networks under biochemical time delays and molecular noises [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 103. by Bor S. Chen, Yu T. Chang posted to systems-biology synthetic-biology stochastic-process stochastic noise networks method gene-expression gene-circuits drug-discovery design biochemical by bertelsen on 2009-09-03 17:57:24 as along with 3 people Synthetic_Biology_Literature behindtherabbit ullahmukhtar
	Design principles for elementary gene circuits: Elements, methods, and examples. [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 11, No. 1. (March 2001), pp. 142-159. by Michael A. A. Savageau posted to review networks gene-expression gene-circuits function design biochemical-systems-theory by bertelsen on 2009-09-03 17:54:16 as along with 4 people and 1 group rklancer macowell monod jjray BUiGEM
	Recent developments in parameter estimation and structure identification of biochemical and genomic systems. [My Copy] Mathematical biosciences, Vol. 219, No. 2. (25 June 2009), pp. 57-83. by I-Chun C. Chou, Eberhard O. Voit posted to systems-biology structure s-system review networks inference biochemical-systems-theory by bertelsen on 2009-09-03 16:30:36 as
	Dynamic modeling of gene expression data [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 4. (13 February 2001), pp. 1693-1698. by Neal S. Holter, Amos Maritan, Marek Cieplak, Nina V. Fedoroff, Jayanth R. Banavar posted to translation time-course prediction networks modeling linear gene-expression dynamic by bertelsen on 2009-09-03 16:16:51 as
	Dynamic modeling of genetic networks using genetic algorithm and S-system [My Copy] Bioinformatics, Vol. 19, No. 5. (22 March 2003), pp. 643-650. by Shinichi Kikuchi, Daisuke Tominaga, Masanori Arita, Katsutoshi Takahashi, Masaru Tomita posted to time-course s-system networks modeling genetic gene-expression evolutionary-computation dynamic by bertelsen on 2009-09-03 15:53:33 as
	Multivariate analysis of noise in genetic regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 229, No. 4. (August 2004), pp. 501-521. by R. Tomioka posted to systems-biology stochastic networks multivariate genetic gene-regulation gene-expression analysis by bertelsen on 2009-09-01 20:48:07 as along with 2 people ryotat Dangerfc
	Investigating the two-moment characterisation of subcellular biochemical networks [My Copy] Journal of Theoretical Biology, Vol. 260, No. 3. (07 October 2009), pp. 340-352. by Mukhtar Ullah, Olaf Wolkenhauer posted to systems-biology subcellular stochastic probabilistic ode noise networks chemical-master-equation chemical biochemical approximation by bertelsen on 2009-09-01 20:38:00 as along with 2 people jjray tinatoni
	Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. [My Copy] Briefings in bioinformatics, Vol. 7, No. 4. (1 December 2006), pp. 364-374. by Natal A. van Riel posted to systems-biology review networks modelling model mechanism experiment dynamic bioinformatics biochemical analysis by bertelsen on 2009-09-01 18:06:51 as along with 4 people and 1 group abhishek_tiwari wnpx raiyar fishtank steinmetzlab
	Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies [My Copy] BMC Systems Biology, Vol. 3, No. 1. (14 January 2009), 5. by Andreas Drager, Marcel Kronfeld, Michael Ziller, et al.Jochen Supper, Hannes Planatscher, Jorgen Magnus, Marco Oldiges, Oliver Kohlbacher, Andreas Zell posted to systems-biology networks modeling metabolic-network comparison by bertelsen on 2009-09-01 17:02:06 as
	Modelling metabolic networks using power-laws and S-systems. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 29-40. by Eberhard O. Voit posted to s-system review power-laws networks modelling metabolomics biochemical-systems-theory by bertelsen on 2009-09-01 15:12:04 as
	Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium. [My Copy] Biophysical chemistry, Vol. 114, No. 2-3. (22 April 2005), pp. 213-220. by Hong Qian, Daniel A. Beard posted to thermodynamics review networks equilibrium biophysics biochemical by bertelsen on 2009-09-01 15:09:44 as along with 1 person schwartzjmc
	Controllability of non-linear biochemical systems [My Copy] Mathematical Biosciences, Vol. 196, No. 1. (July 2005), pp. 99-123. by A. Ervadiradhakrishnan, E. Voit posted to systems-biology simulation s-system prediction pathway nonlinear networks models mathematical biochemical-systems-theory biochemical analysis by bertelsen on 2009-08-31 23:41:57 as
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to visualization tool systems-biology standard software regulation networks languages interactis graphical-modelling biochemical by bertelsen on 2009-08-31 15:39:29 as along with 38 people and 3 groups singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Bayesian sparse hidden components analysis for transcription regulation networks. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 6. (15 March 2006), pp. 739-746. by Chiara Sabatti, Gareth M. James posted to bayesian factor-analysis gene-expression integrative networks regulation sparse systems-biology transcription by bertelsen on 2009-08-10 00:27:12 as along with 4 people engelhardt lp2 hms edwardmorrissey
	Biological Network Inference and analysis using SEBINI and CABIN. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 551-576. by R. Taylor, M. Singhal posted to analysis inference networks systems-biology by bertelsen on 2009-07-08 23:27:55 as along with 3 people guhjy ekotelnikova irenas
	Cooperativity and saturation in biochemical networks: A saturable formalism using Taylor series approximations [My Copy] Biotechnology and Bioengineering, Vol. 97, No. 5. (2007), pp. 1259-1277. by Albert Sorribas, Benito Hernández-Bermejo, Ester Vilaprinyo, Rui Alves posted to approximations biochemical cooperativity kinetic modelling networks saturation by bertelsen on 2009-06-15 15:18:40 as along with 2 people fishtank Pascalichouchou
	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i282-288. by Wei Keat K. Lim, Kai Wang, Celine Lefebvre, Andrea Califano posted to analysis comparative gene microarray networks normalization reverse-engineering by bertelsen on 2009-06-11 23:38:22 as along with 12 people jperkins jeremymiller lawraga frohike huiminC dubhelix giovenko pengchy aramesh2 shigepong ghattem heliopais
	A Bayesian approach to reconstructing genetic regulatory networks with hidden factors [My Copy] Bioinformatics, Vol. 21, No. 3. (01 February 2005), 349. by Matthew J. Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L. Wild posted to bayesian factors genetic latent networks regulation by bertelsen on 2009-06-11 21:55:50 as along with 5 people Borelli edwardmorrissey helsley frohike cswinburne
	Functional modules by relating protein interaction networks and gene expression [My Copy] Nucl. Acids Res., Vol. 31, No. 21. (1 November 2003), pp. 6283-6289. by Sabine Tornow, H. W. Mewes posted to functional-genomics gene-expression modules networks by bertelsen on 2009-06-06 22:38:02 as along with 4 people yaredo saket jiny carlk
	A general framework for weighted gene co-expression network analysis. [My Copy] Statistical applications in genetics and molecular biology, Vol. 4, No. 1. (2005) by Bin Zhang, Steve Horvath posted to analysis co-expression framework networks topological by bertelsen on 2009-05-05 13:16:25 as along with 8 people and 1 group rdiaz cswinburne druvus pengchy kengg jeremymiller natstreet jo_davies GeschwindLab
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted to analysis cytoscape gene-expression integrating networks protocol by bertelsen on 2009-03-03 23:09:17 as along with 19 people and 1 group daveGerrard greg badi ptrobajo tonamswish daforerog Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin shung thomaskelder AlexanderPico GeneGo
	A copula method for modeling directional dependence of genes. [My Copy] BMC bioinformatics, Vol. 9 (01 May 2008), 225. by Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap-Hoon Han, Changyi Park, Insuk Sohn posted to algorithm alternative bayesian computational information multivariate mutual-information networks by bertelsen on 2009-03-03 22:54:09 as along with 5 people frohike donalddunbar tmmurali guhjy chodar
	Inferring regulatory networks. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 263-275. by H. Li, J. Xuan, Y. Wang, M. Zhan posted to computational gene-expression inference networks regulation review by bertelsen on 2009-03-03 22:50:22 as along with 4 people agonzale jago tvdbulck dolchan
	Computational and experimental approaches for modeling gene regulatory networks. [My Copy] Curr Pharm Des, Vol. 13, No. 14. (2007), pp. 1415-1436. by J. Goutsias, N. H. Lee posted to computational experiment functional-genomics gene-regulation microarray modeling networks reverse-engineering review by bertelsen on 2009-03-03 22:44:19 as along with 1 person and 1 group dpollard EisenLab
	Network inference using informative priors [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14313-14318. by Sach Mukherjee, Terence P. Speed posted to graphs inference networks prior by bertelsen on 2009-02-24 12:15:56 as along with 10 people and 1 group zufar ggallone guhjy Borelli ptrobajo jfr markstoehr stringertheory roys tmmurali Jarman Lab
	Functional and evolutionary inference in gene networks: does topology matter? [My Copy] Genetica, Vol. 129, No. 1. (January 2007), pp. 83-103. by Siegal, Mark, Promislow, Daniel, Bergman, Aviv posted to evolution functional-genomics gene networks topological by bertelsen on 2009-02-18 20:11:01 as along with 1 person kentz
	Differential Dependency Network Analysis to Identify Condition-Specific Topological Changes in Biological Networks [My Copy] Bioinformatics (26 December 2008), btn660. by Bai Zhang, Huai Li, Rebecca B. Riggins, et al.Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Wang posted to analysis dependence microarray networks topological by bertelsen on 2009-02-18 20:05:06 as along with 7 people southo lptolik mstumpf imina dolchan grahamc roys
	Knowledge-guided multi-scale independent component analysis for biomarker identification [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Li Chen, Jianhua Xuan, Chen Wang, et al.Ie M. Shih, Yue Wang, Zhen Zhang, Eric Hoffman, Robert Clarke posted to analysis biomarker gene-expression ica microarray motif networks regulation by bertelsen on 2009-02-18 11:47:00 as along with 4 people jfr guhjy xtizon GeeSharpMinor
	Rewriting Game Theory as a Foundation for State-Based Models of Gene Regulation [My Copy] Computational Methods in Systems Biology (2006), pp. 257-270. by Chafika Chettaoui, Franck Delaplace, Pierre Lescanne, Mun’delanji Vestergaard, René Vestergaard posted to game-theory gene-regulation networks regulation by bertelsen on 2008-11-19 15:35:29 as
	Identifying Submodules of Cellular Regulatory Networks [My Copy] In Computational Methods in Systems Biology, Vol. 4210/2006 (18-19 October 2006), pp. 155-168. by Guido Sanguinetti, Magnus Rattray, Neil D. Lawrence edited by C. Priami posted to gene-expression networks regulation by bertelsen on 2008-11-19 13:05:47 as
	Identifying differentially expressed subnetworks with MMG. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2792-2793. by J. Noirel, G. Sanguinetti, P. C. Wright posted to analysis data expression graphs networks proteomics quantitative regulation software by bertelsen on 2008-11-19 12:59:13 as along with 11 people zufar pauldobson jfr sg45653 pengchy behindtherabbit roys jiayi369 tmmurali guhjy rdiaz
	Inferring Cellular Networks Using Probabilistic Graphical Models [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805. by Nir Friedman posted to graphs inference model networks probability by bertelsen on 2008-09-09 16:23:31 as along with 24 people and 2 groups antonkratz jxl phoenixzxl abhishek_tiwari richardbickerton ruichu ggallone ldfu ujh lfriedl opheliav ryang wnpx nirfriedman neveaire koller helsley dimatura edwardmorrissey vietanh0 Yumyai srp33 saman_vp jo_davies Jarman Lab kdl
	Computing Chemical Organizations in Biological Networks. [My Copy] Bioinformatics (Oxford, England) (14 May 2008) by F Centler, C Kaleta, P Speroni S. di Fenizio, Peter Dittrich posted to biology chemical computing networks organization by bertelsen on 2008-09-09 16:02:00 as along with 2 people dullhunk reyez
	Gene regulatory networks in lactation: identification of global principles using bioinformatics. [My Copy] BMC systems biology, Vol. 1 (2007) by D. G. Lemay, M. C. Neville, M. C. Rudolph, K. S. Pollard, J. B. German posted to bioinformatics networks regulation by bertelsen on 2008-07-03 01:09:04 as

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microarray	223
analysis	129
review	125
gene-expression	124
systems-biology	95
bayesian	92
cancer	78
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networks	57
affymetrix	48
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pathway	28
genechip	27
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transcription	20
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go	13
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hybrid	4
inflammation	4
inhibitors	4
inner-ear	4
interface	4
knowledge-based	4
literature	4
local	4
map	4
mechanistic	4
metabolic-control-analysis	4
mice	4
mining	4
mixtures	4
motif	4
nested	4
ode	4
ordinal	4
pharmacogenomic	4
philosophy	4
physics	4
post-transcriptional	4
power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
accuracy	3
adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
chromosomal-expression	3
combinatorial	3
component	3
correlation	3
dataset	3
differential-equation	3
differentiation	3
dirichlet	3
distributions	3
dynamical-systems	3
enzyme	3
evaluation	3
exchangeability	3
fdr	3
gene-circuits	3
generalized	3
genes	3
genotyping	3
histological	3
hmm	3
humans	3
identifiability	3
independence	3
interference	3
introduction	3
languages	3
learning	3
management	3
medicine	3
metastatic	3
model-selection	3
modularity	3
multinomial	3
natural	3
nonnegative	3
nuclear	3
parasitology	3
pattern-recognition	3
performance	3
perturbation	3
polymerase	3
random	3
ranking	3
regulators	3
renormalization-group-analysis	3
repository	3
reproducibility	3
resonance	3
resource	3
robust	3
signaling-system	3
signal-transduction	3
snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
approximations	2
behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cell-migration	2
cell-population	2
cells	2
chromosome-wide	2
comment	2
community	2
constraint-based-modelling	2
copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
detection	2
deterministic	2
difference	2
distance	2
dsrna	2
epithelial	2
evidence	2
exon	2
false-discovery	2
for:birte	2
format	2
foundations	2
fractal	2
game-theory	2
gamma	2
generative	2
genotype	2
grid-computing	2
health	2
heart	2
heterogeneous	2
homologous	2
image-processing	2
immune-system	2
indian	2
internet	2
isoform	2
knowledgebase	2
kullback-leibler	2
lasso	2
logic	2
lung	2
mage	2
mass_spectroscopy	2
matlab	2
matrix	2
matroid	2
memory	2
metabolic	2
methylation	2
miame	2
mismatch	2
missing-value	2
mitochondria	2
molecular-connectivity-map	2
multi-target	2
mutations	2
neuroscience	2
nonequilibrium	2
non-specific	2
nucleic	2
numerical	2
octave	2
oncogene-addiction	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
preprocessing	2

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