bertelsen's review [123 articles] Export

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	Scale-free flow of life: on the biology, economics, and physics of the cell [My Copy] Theoretical Biology and Medical Modelling, Vol. 6, No. 1. (05 May 2009), 6. by Alexei Kurakin posted to thermodynamics scale-free review physics organization nonequilibrium multi-scale cell-biology biology by bertelsen on 2009-11-23 21:58:16 as
	The Peter Pan paradigm [My Copy] Theoretical Biology and Medical Modelling, Vol. 5, No. 1. (08 January 2008), 1. by J. Craig Cohen, Janet Larson posted to review organogenesis environment developmental by bertelsen on 2009-11-23 21:49:00 as
	DNA microarrays: a powerful genomic tool for biomedical and clinical research. [My Copy] Molecular medicine (Cambridge, Mass.), Vol. 13, No. 9-10. (t 2007), pp. 527-541. by Victor Trevino, Francesco Falciani, Hugo A. Barrera-Saldaña posted to tool review multidisciplinary microarray clinical biomedical by bertelsen on 2009-11-18 20:42:42 as
	Models and computational strategies linking physiological response to molecular networks from large-scale data. [My Copy] Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, Vol. 366, No. 1878. (13 September 2008), pp. 3067-3089. by Fernando Ortega, Katrin Sameith, Nil Turan, et al.Russell Compton, Victor Trevino, Marina Vannucci, Francesco Falciani posted to systems-biology review physiology pathways networks multi-scale molecular modularity models integration complexity by bertelsen on 2009-11-18 20:26:07 as along with 2 people aviad_work cswinburne
	Clinical bioinformatics. [My Copy] Chang Gung medical journal, Vol. 28, No. 4. (April 2005), pp. 201-211. by Phei Lang L. Chang posted to review medical health clinical bioinformatics by bertelsen on 2009-11-18 13:00:37 as
	P bodies: at the crossroads of post-transcriptional pathways [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 1. (01 January 2007), pp. 9-22. by Ana Eulalio, Isabelle Behm-Ansmant, Elisa Izaurralde posted to review regulation post-transcriptional pathways p-bodies mrna localization gene-expression cytoplasmic cell-biology by bertelsen on 2009-10-07 23:24:55 as along with 3 people and 2 groups xico margaritis lzhonsailing Neuroscience WetBiology
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to review regulation mrna human cancer 3-utr by bertelsen on 2009-10-07 22:17:09 as along with 1 person hcoller
	Utilization of genomic signatures to direct use of primary chemotherapy. [My Copy] Current opinion in genetics & development, Vol. 18, No. 1. (February 2008), pp. 62-67. by Anil Potti, Joseph R. Nevins posted to therapy signatures review gene-expression clinical cancer by bertelsen on 2009-10-06 20:57:01 as
	Theory and Limitations of Genetic Network Inference from Microarray Data [My Copy] Annals of the New York Academy of Sciences, Vol. 1115, No. Reverse Engineering Biological Networks: Opportunities and Challenges in Computational Methods for Pathway Inference. (December 2007), pp. 51-72. by Adam A. Margolin, O. Andrea Califan posted to theory statistical review reverse-engineering network microarray latent inference genetic gene-expression dependence by bertelsen on 2009-09-30 18:01:54 as along with 2 people talponer roys
	Ontological analysis of gene expression data: current tools, limitations, and open problems [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595. by Purvesh Khatri, Sorin Draghici posted to tool review ontologies microarray gene-expression enrichment-analysis comparison analysis by bertelsen on 2009-09-27 20:19:00 as along with 18 people and 1 group darian jperkins ipark-kaist gjuggler isakemal Stew shikin diamantis Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck Bioinformatics - CRUK
	Pathways to the analysis of microarray data. [My Copy] Trends in biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435. by R. Keira Curtis, Matej Oresic, Antonio Vidal-Puig posted to tool review pathways pathway-analysis microarray integration gene-expression enrichment-analysis analysis by bertelsen on 2009-09-27 20:16:12 as along with 11 people and 2 groups thomaskelder udivi AlexanderPico jfr saman_vp snuppepuppan textoris Ayest tardigrade ealloza heliopais ConklinLab BioinfoCIPF
	Gene synthesis demystified. [My Copy] Trends in biotechnology, Vol. 27, No. 2. (26 February 2009), pp. 63-72. by Michael J. Czar, J. Christopher Anderson, Joel S. Bader, Jean Peccoud posted to synthetic-biology synthesis review genetic_engineering gene dna by bertelsen on 2009-09-25 11:47:10 as along with 6 people JamesBarger antonkratz guhjy pansapiens Synthetic_Biology_Literature Vincent_Rouilly
	Early-warning signals for critical transitions [My Copy] Nature, Vol. 461, No. 7260. (03 September 2009), pp. 53-59. by Marten Scheffer, Jordi Bascompte, William A. Brock, et al.Victor Brovkin, Stephen R. Carpenter, Vasilis Dakos, Hermann Held, Egbert H. van Nes, Max Rietkerk, George Sugihara posted to warning transitions threshold systems-biology signals review dynamical-systems disease critical complexity by bertelsen on 2009-09-21 16:16:08 as along with 18 people yyfwuhan nurban pablocarb kumar_physics vvoorr MurphysLab diamantis yse danilov jjray apocapoc kinestetika cermak ahuesler gi0rgi0ne bayesian pem cjryan
	A strategy for integrative computational physiology. [My Copy] Physiology (Bethesda, Md.), Vol. 20 (October 2005), pp. 316-325. by Peter Hunter, Poul Nielsen posted to systems-biology review physiology methodology integrative by bertelsen on 2009-09-20 21:20:36 as along with 1 person danlea
	Semantic Similarity in Biomedical Ontologies [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000443. by Catia Pesquita, Daniel Faria, André O. Falcão, Phillip Lord, Francisco M. Couto posted to semantic-similarity review ontologies measures biomedical by bertelsen on 2009-09-16 11:24:29 as along with 9 people and 1 group sobolevnrm MarcoAlvarez adamjamesreid fgibson dullhunk guhjy badger_master phoenixzxl druvus Journal picks
	Literature mining for the biologist: from information retrieval to biological discovery [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 119-129. by Lars J. Jensen, Jasmin Saric, Peer Bork posted to review mining literature hypothesis high-throughput discovery data-integration data biology by bertelsen on 2009-09-16 02:28:50 as along with 47 people and 4 groups tanyacovi6 MARCOUNAM eudominguezmartin sm-rush LEONRANGEL artaban421 rocling virolog dipenps druvus Zephyrus fgibson psique lmichan cisevol ilyashl henk-cul daforerog isimpson dansullivanblk yggdrasil Enro guhjy kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms skumagai TheresaNiederberger satre akastrin ibuch BergmanLab T_lab biomedical-nlp ADMiRes
	Cancer systems biology: exploring cancer-associated genes on cellular networks. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 64, No. 14. (July 2007), pp. 1752-1762. by E. Wang, A. Lenferink, M. O'Connor-McCourt posted to systems-biology review networks gene-expression cellular-networks cancer by bertelsen on 2009-09-15 21:18:24 as along with 3 people and 2 groups jfr ealloza diging_data BioinfoCIPF BTS-PT-AS-CS
	Mediation, Modulation, and Consequences of Membrane-Cytoskeleton Interactions [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 65-95. by Gary J. Doherty, Harvey T. McMahon posted to review modulation membrane mediation mechanistic invivo interactions human disease cytoskeleton cell-migration biophysics biology by bertelsen on 2009-09-11 13:21:10 as along with 1 person guhjy
	The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 450-461. by Dawn C. Walker, Jennifer Southgate posted to systemic-computation systems-biology review noise multi-scale modelling heterogeneity emergent-properties computational-biology complexity cellular-automata cell-biology cell agent-based by bertelsen on 2009-09-06 21:01:34 as along with 4 people maburkitt sandfire reyez fgibson
	Modeling the Heart--from Genes to Cells to the Whole Organ [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1678-1682. by Denis Noble posted to systems-biology review physiology organ multi-scale modelling heart genes cells by bertelsen on 2009-09-06 20:53:45 as along with 6 people and 1 group bruno reyez brocktice eweaver maburkitt chihchun_chen TulaneCEP
	Towards whole-organ modelling of tumour growth [My Copy] Progress in Biophysics and Molecular Biology, Vol. 85, No. 2-3. (July 2004), pp. 451-472. by T. Alarcon posted to tumour-growth review organ multi-scale modelling integrative drug-delivery cancer by bertelsen on 2009-09-06 20:04:17 as along with 1 person glyg
	From the determination of complex reaction mechanisms to systems biology. [My Copy] Annual review of biochemistry, Vol. 77, No. 1. (2008), pp. 479-494. by John Ross posted to systems-biology review reactions reaction-systems networks mechanism complexity chemical biochemical by bertelsen on 2009-09-06 18:43:36 as along with 1 person guhjy
	The proteome: structure, function and evolution. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 441-451. by Keiran Fleming, Lawrence A. Kelley, Suhail A. Islam, et al.Robert M. MacCallum, Arne Muller, Florencio Pazos, Michael J. Sternberg posted to structure sequence review proteome protein ontology model function annotation by bertelsen on 2009-09-06 00:29:42 as along with 1 person yuslinaz
	Homology a personal view on some of the problems. [My Copy] Trends in genetics : TIG, Vol. 16, No. 5. (May 2000), pp. 227-231. by W. M. Fitch posted to review homologous by bertelsen on 2009-09-06 00:24:25 as along with 2 people dandaman AaronDarling
	You're one in a googol: optimizing genes for protein expression [My Copy] Journal of The Royal Society Interface, Vol. 6, No. Suppl 4. (6 August 2009), pp. S467-S476. by Mark Welch, Alan Villalobos, Claes Gustafsson, Jeremy Minshull posted to synthetic-biology review protein-expression gene-expression gene-design gene algorithms by bertelsen on 2009-09-05 18:03:19 as along with 2 people ts3435 antonkratz
	Single-molecule biophysics: at the interface of biology, physics and chemistry [My Copy] Journal of The Royal Society Interface, Vol. 5, No. 18. (6 January 2008), pp. 15-45. by Ashok A. Deniz, Samrat Mukhopadhyay, Edward A. Lemke posted to single-molecule review physics invivo chemistry biophysics biology by bertelsen on 2009-09-05 15:59:27 as along with 1 person Vincent_Rouilly
	Modelling of proteins in membranes. [My Copy] Chemistry and physics of lipids, Vol. 141, No. 1-2. (June 2006), pp. 2-29. by Maria Maddalena M. Sperotto, Sylvio May, Artur Baumgaertner posted to for:birte theory simulations review protein modelling membrane lipid-membrane by bertelsen on 2009-09-05 11:43:24 as along with 2 people birte paulschlesinger
	Multiscale modeling of biomolecular systems: in serial and in parallel. [My Copy] Current opinion in structural biology, Vol. 17, No. 2. (April 2007), pp. 192-198. by Gary S. Ayton, Will G. Noid, Gregory A. Voth posted to systems-biology systems structural-biology review multi-scale molecular models modelling methods hybrid hierarchical bridges biophysics biomolecular by bertelsen on 2009-09-05 11:21:29 as along with 5 people jonathancooper Elena_Zubova RamuAnandakrishnan aqeel choonpeng
	Integration from proteins to organs: the Physiome Project. [My Copy] Nature reviews. Molecular cell biology, Vol. 4, No. 3. (March 2003), pp. 237-243. by Peter J. Hunter, Thomas K. Borg posted to systems-biology review multi-scale integrative hypothesis human framework biophysics biochemical anatomy by bertelsen on 2009-09-05 10:51:25 as along with 2 people jonathancooper danlea
	From single- to multi-target drugs in cancer therapy: when aspecificity becomes an advantage. [My Copy] Current medicinal chemistry, Vol. 15, No. 5. (2008), pp. 422-432. by A. Petrelli, S. Giordano posted to therapy single-target review pathways multi-target inhibitors drug-target drug-discovery drug cancer by bertelsen on 2009-09-05 10:50:15 as along with 1 person biomcgary
	What does systems biology mean for drug development? [My Copy] Current medicinal chemistry, Vol. 15, No. 15. (2008), pp. 1520-1528. by André Schrattenholz, Vukić Soskić posted to systems-biology stochasticity specificity review pharmacogenomic multi-target drug-discovery drug disease complexity affinity by bertelsen on 2009-09-05 10:47:26 as along with 1 person flbarroso
	Microtubule assembly dynamics: an attractive target for anticancer drugs. [My Copy] IUBMB life, Vol. 60, No. 6. (June 2008), pp. 368-375. by Parminder Singh, Krishnan Rathinasamy, Renu Mohan, Dulal Panda posted to treatment review mitosis microtubule eukaryotic dynamics drug-target disease chemotherapy cancer apoptosis by bertelsen on 2009-09-05 10:40:39 as
	Targeting inhibitor of apoptosis proteins (IAPs) for cancer therapy. [My Copy] Anti-cancer agents in medicinal chemistry, Vol. 8, No. 5. (June 2008), pp. 533-539. by Simone Fulda posted to tumorigenesis tumor therapy review inhibitors cancer apoptosis by bertelsen on 2009-09-05 10:37:26 as
	Modulation of cellular response to anticancer treatment by caffeine: inhibition of cell cycle checkpoints, DNA repair and more. [My Copy] Current pharmaceutical biotechnology, Vol. 9, No. 4. (August 2008), pp. 325-336. by Michal Sabisz, Andrzej Skladanowski posted to treatment review inhibitors cellular-response cancer caffeine by bertelsen on 2009-09-05 10:34:23 as along with 2 people Zephyrus guhjy
	Cancer therapy: targeting cell cycle regulators. [My Copy] Anti-cancer agents in medicinal chemistry, Vol. 8, No. 7. (October 2008), pp. 723-731. by Martin Johansson, Jenny Liao L. Persson posted to therapy review regulators pathways inhibitors human drug-target drug cell-growth cell-cycle cancer apoptosis by bertelsen on 2009-09-05 10:31:30 as
	The role of modelling in identifying drug targets for diseases of the cell cycle. [My Copy] Journal of the Royal Society, Interface / the Royal Society, Vol. 3, No. 10. (22 October 2006), pp. 617-627. by Robert G. Clyde, James L. Bown, Ted R. Hupp, Nikolai Zhelev, John W. Crawford posted to systems-biology review regulation pathways network modelling drug-target drug-discovery disease cell-cycle by bertelsen on 2009-09-05 10:26:55 as
	Strategies for the physiome project. [My Copy] Annals of biomedical engineering, Vol. 28, No. 8. (August 2000), pp. 1043-1058. by J. B. Bassingthwaighte posted to virtual_human systems-biology review quantitative physiology pathology networks multi-scale modules model human database complexity biochemical by bertelsen on 2009-09-04 21:00:17 as
	Living with noisy genes: how cells function reliably with inherent variability in gene expression. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 36 (2007), pp. 413-434. by Narendra Maheshri, Erin K. O'Shea posted to systems-biology stochastic review noise gene-expression examples by bertelsen on 2009-09-03 18:49:23 as along with 6 people guhjy Zephyrus marcio jjray madhadron margaritis
	Design principles for elementary gene circuits: Elements, methods, and examples. [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 11, No. 1. (March 2001), pp. 142-159. by Michael A. A. Savageau posted to review networks gene-expression gene-circuits function design biochemical-systems-theory by bertelsen on 2009-09-03 17:54:16 as along with 4 people and 1 group rklancer macowell monod jjray BUiGEM
	Gene regulatory network inference: Data integration in dynamic models—A review [My Copy] Biosystems, Vol. 96, No. 1. (27 April 2009), pp. 86-103. by Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke posted to systems-biology review regulation network models integration inference dynamic data-integration by bertelsen on 2009-09-03 16:44:18 as along with 7 people nicholasflann antonkratz greg guhjy mjoach sjung allysonlister
	Recent developments in parameter estimation and structure identification of biochemical and genomic systems. [My Copy] Mathematical biosciences, Vol. 219, No. 2. (25 June 2009), pp. 57-83. by I-Chun C. Chou, Eberhard O. Voit posted to systems-biology structure s-system review networks inference biochemical-systems-theory by bertelsen on 2009-09-03 16:30:36 as
	Metabolic control analysis in drug discovery and disease. [My Copy] Nature biotechnology, Vol. 20, No. 3. (March 2002), pp. 243-249. by Marta Cascante, Laszlo G. Boros, Begoña Comin-Anduix, Pedro de Atauri, Josep J. Centelles, Paul W-N W. Lee posted to therapy review pathways metabolic-network metabolic-control-analysis medical_applications functional-genomics drug-discovery disease cancer_therapy cancer biochemical by bertelsen on 2009-09-02 16:05:19 as along with 1 person alexg
	Metabolic modeling: a tool of drug discovery in the post-genomic era. [My Copy] Drug discovery today, Vol. 7, No. 11. (1 June 2002), pp. 621-628. by Eberhard O. Voit posted to systems-biology review microarray metabolomics metabolic-control-analysis functional-genomics drug-discovery biochemical-systems-theory by bertelsen on 2009-09-01 18:17:11 as
	Cancer: a Systems Biology disease. [My Copy] Bio Systems, Vol. 83, No. 2-3. (February 2006), pp. 81-90. by Jorrit J. Hornberg, Frank J. Bruggeman, Hans V. Westerhoff, Jan Lankelma posted to systems-biology review cancer by bertelsen on 2009-09-01 18:09:38 as along with 7 people and 1 group Scis0000002 chihchun_chen ubcg08l Borelli julius fishtank maburkitt SysbioMPI-TCells
	Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments. [My Copy] Briefings in bioinformatics, Vol. 7, No. 4. (1 December 2006), pp. 364-374. by Natal A. van Riel posted to systems-biology review networks modelling model mechanism experiment dynamic bioinformatics biochemical analysis by bertelsen on 2009-09-01 18:06:51 as along with 4 people and 1 group abhishek_tiwari wnpx raiyar fishtank steinmetzlab
	The dawn of a new era of metabolic systems analysis [My Copy] Drug Discovery Today: BIOSILICO, Vol. 2, No. 5. (September 2004), pp. 182-189. by E. Voit posted to systems-biology s-system review pathway models metabolic-network kinetic high-throughput biochemical-systems-theory analysis by bertelsen on 2009-09-01 17:58:38 as
	Mechanistic simulations of inflammation: Current state and future prospects [My Copy] Mathematical Biosciences, Vol. 217, No. 1. (January 2009), pp. 1-10. by Y. Vodovotz, G. Constantine, J. Rubin, M. Csete, E. Voit, G. An posted to translational-medicine systems-biology systemic-computation stochastic simulation review personalized-medicine modeling mechanistic mathematical inflammation differential-equation biochemical-systems-theory agent-based by bertelsen on 2009-09-01 16:14:45 as
	Modelling metabolic networks using power-laws and S-systems. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 29-40. by Eberhard O. Voit posted to s-system review power-laws networks modelling metabolomics biochemical-systems-theory by bertelsen on 2009-09-01 15:12:04 as
	Thermodynamics of stoichiometric biochemical networks in living systems far from equilibrium. [My Copy] Biophysical chemistry, Vol. 114, No. 2-3. (22 April 2005), pp. 213-220. by Hong Qian, Daniel A. Beard posted to thermodynamics review networks equilibrium biophysics biochemical by bertelsen on 2009-09-01 15:09:44 as along with 1 person schwartzjmc
	A comparison of variant theories of intact biochemical systems. II. Flux-oriented and metabolic control theories. [My Copy] Mathematical biosciences, Vol. 94, No. 2. (June 1989), pp. 195-238. by A. Sorribas, M. A. Savageau posted to review metabolomics comparison biochemical-systems-theory by bertelsen on 2009-09-01 14:58:27 as

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microarray	222
analysis	129
review	123
gene-expression	122
systems-biology	95
bayesian	92
cancer	78
expression	59
networks	57
affymetrix	48
gene	45
functional-genomics	44
software	44
annotation	43
biology	42
tool	42
model	40
regulation	38
network	37
modelling	36
data	34
bioinformatics	31
disease	29
modeling	29
pathway	28
genechip	27
models	27
rna	27
polyadenylation	26
human	25
clustering	24
drug-discovery	24
multi-scale	24
oligonucleotide	24
gene-regulation	23
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
molecular	20
mrna	20
probability	20
transcription	20
differential	19
dynamic	19
factor-analysis	19
database	18
integrative	18
probe-level	18
stochastic	18
chemical	17
mathematical	17
probabilistic	17
simulation	17
dirichlet-process	16
function	16
integration	16
kinetic	16
nonparametric	16
comparison	15
computational	15
drug	15
experiment	15
genome	15
genomics	15
high-throughput	15
r	15
sampling	15
sequence	15
statistical	15
structure	15
theory	15
algorithm	14
enrichment-analysis	14
gastric	14
noise	14
normalization	14
prediction	14
python	14
regression	14
array	13
biochemical-systems-theory	13
bioconductor	13
classification	13
control	13
framework	13
go	13
interpretation	13
mirna	13
personalized-medicine	13
phenotype	13
protein	13
statistics	13
therapy	13
algorithms	12
clinical	12
complexity	12
hierarchical	12
latent	12
mechanism	12
modules	12
pathways	12
promoter	12
transcriptome	12
computational-biology	11
distribution	11
evolution	11
non-protein-coding	11
oncogenesis	11
quality	11
sparse	11
tumour	11
alternative	10
genetic	10
integrating	10
mcmc	10
mixture	10
modular	10
proteomics	10
quantitative	10
systems	10
test	10
uncertainty	10
3-utr	9
biomedical	9
biophysics	9
cell-biology	9
data-integration	9
design	9
diagnostic	9
discovery	9
dna	9
hypothesis	9
information	9
interactions	9
large-scale	9
machine-learning	9
method	9
methodology	9
multiple	9
quality-control	9
selection	9
s-system	9
therapeutic	9
transcription-factor	9
visualization	9
background	8
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heterogeneity	8
hybridization	8
ica	8
insilico	8
linear	8
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overview	8
rnai	8
synthetic-biology	8
systemic-computation	8
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binary	7
development	7
drug-target	7
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multivariate	7
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pathology	7
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tiling	7
time-course	7
translation	7
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computing	6
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epigenetic	6
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feature	6
genetics	6
graphs	6
mammalian	6
matrix-factorization	6
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nonlinear	6
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primary	6
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profiles	6
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summary	6
thermodynamics	6
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upt	6
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baysian	5
bias	5
binfbib	5
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book	5
cell-cycle	5
comparative	5
correction	5
dependence	5
encode	5
environment	5
error	5
eukaryotic	5
false	5
gaussian	5
gene-function	5
genome-wide	5
gibbs	5
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invitro	5
kidney	5
localization	5
measurement	5
medical	5
membrane	5
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ncrna	5
nmd	5
nonsense-mediated	5
normal	5
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pathway-analysis	5
pattern	5
pca	5
physical	5
prior	5
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protein-expression	5
quality-assessment	5
quantitative-trait-loci	5
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splicing	5
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time	5
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variational	5
5-utr	4
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cage	4
cell	4
circuits	4
co-expression	4
co-regulation	4
decay	4
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dynamics	4
endolymphatic-sac	4
entropy	4
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exons	4
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filtering	4
gastric-cancer-group	4
global	4
graphical-modelling	4
grid	4
guide	4
high-dimensional	4
hybrid	4
inflammation	4
inhibitors	4
inner-ear	4
interface	4
knowledge-based	4
literature	4
local	4
map	4
mechanistic	4
metabolic-control-analysis	4
mice	4
mining	4
mixtures	4
motif	4
nested	4
ode	4
ordinal	4
pharmacogenomic	4
philosophy	4
physics	4
post-transcriptional	4
power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
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adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
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component	3
correlation	3
dataset	3
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enzyme	3
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exchangeability	3
fdr	3
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genes	3
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hmm	3
humans	3
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introduction	3
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resource	3
robust	3
signaling-system	3
signal-transduction	3
snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
approximations	2
behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cell-migration	2
cell-population	2
cells	2
chromosome-wide	2
constraint-based-modelling	2
copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
detection	2
deterministic	2
difference	2
distance	2
dsrna	2
epithelial	2
evidence	2
exon	2
false-discovery	2
for:birte	2
format	2
foundations	2
fractal	2
game-theory	2
gamma	2
generative	2
genotype	2
grid-computing	2
health	2
heart	2
heterogeneous	2
homologous	2
image-processing	2
immune-system	2
indian	2
internet	2
isoform	2
knowledgebase	2
kullback-leibler	2
lasso	2
logic	2
lung	2
mage	2
mass_spectroscopy	2
matlab	2
matrix	2
matroid	2
memory	2
metabolic	2
methylation	2
miame	2
mismatch	2
missing-value	2
mitochondria	2
molecular-connectivity-map	2
multi-target	2
mutations	2
neuroscience	2
nonequilibrium	2
non-specific	2
nucleic	2
numerical	2
octave	2
oncogene-addiction	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
preprocessing	2
present_absent_call	2
primer	2
probesgenetics	2
probit	2
programming	2
properties	2
proteome	2
protozoan	2
rate-law	2
reasoning	2
rma	2
sage	2
saturation	2
semantic-web	2
sequential	2
set	2
small	2
space	2
stem-cells	2
stochasticity	2
stress	2
subcellular	2
target	2
t-cell	2
threshold	2
tissue-level	2
translational-medicine	2
t-test	2
two-color	2
user-computer	2
variational-inference	2
vector	2
2d	1
3d	1
454	1
5--3	1
abstracts	1
across	1
adenocarcinomas	1
agilent	1
aging	1
algebra	1
allometric	1
alphabet	1
alternate	1
analysisinstrumentationmethods	1
analytical	1
and	1
animal-communication	1
anlaysis	1
annotations	1
antisense	1
antiviral	1
applied	1
approximat	1
aquaporins	1
architecture	1
articles	1
artifacts	1
assay	1
atlas	1
atmosphere	1
atom	1
averaging	1
basic	1
bayes-theorem	1
bifurcation	1
bilayer	1
binding	1
binomial	1
bioactive	1
biomechanical	1
biomedicine	1
biophysic	1
biosphere	1
black-box	1
brain	1
breast_cancer	1
bridges	1
caffeine	1
calculus	1
cancer_therapy	1
caner	1
canonical	1
cap	1
carcinogenesis	1
carcinoid	1
carcinoma	1
causal	1
cds	1
c-elegans	1
cell-growth	1
cell-interaction	1
cell-movement	1
cellular-automata	1
cellular-networks	1
cellular-response	1
cell-wall	1
cgh	1
chain	1
chemistry	1
chemotactic	1
chicken	1
chip	1
chromosomal-localization	1
chromosomes	1
civil	1
cleavage	1
climate	1
cloud-computing	1
clouds	1
cluster	1
coarse-grained	1
comment	1
community	1
comparative-genomic-hybridization	1
compartments	1
concepts	1
conditional-independence	1
conference	1
confounding	1
conserved	1
consistency	1
content-management-system	1
contrast	1
conversion	1
cooperativity	1
coordination	1
co-regulated	1
course	1
critical	1
curvature	1
curves	1
cystic	1
cystogenesis	1
cytokines	1
cytomics	1
cytoscape	1
cytoskeleton	1
cytosol	1
dag	1
decomposition	1
density-estimation	1
developmental	1
diagnosis	1
diagram	1
dicer	1
dilution	1
dimension-reduction	1
discover	1
discretization	1
discrimination	1
dispersion	1
dissection	1
divergence	1
division	1
dominance	1
drug-delivery	1
drug-resistant	1
dyadic	1
dye	1
egg	1
electrophoresis	1
embryo	1
empirical-bayes	1
energy	1
enterococcus	1
epg-bodies	1
epidemic	1
epidemiology	1
epidermal_growth_factor	1
epigenome	1
equilibrium	1
equipment	1
e-science	1
estimates	1
etiology	1
european	1
examples	1
expectation-maximization	1
exploration	1
exponential	1
exponential-models	1
factors	1
factorsgenetics	1
failure	1
family	1
fat-tailed	1
feature-level	1
field-theory	1
fire	1
fluctuation	1
fluorescent	1
fold-change	1
force-field	1
forest	1
formal	1
frequency_modulation	1
frequentist	1
functional_data_analysis	1
gain-control	1
gapdh	1
gastrin	1
gcrma	1
gel	1
gene-design	1
gene-modules	1
gene-networks	1
generality	1
generator	1
gene-set-analysis	1
gene-silencing	1
genetic_engineering	1
genome-assembly	1
geometry	1
glycan	1
glycobiology	1
glycoprotein	1
goodness-of-fit	1
gram-positive	1
h1n1	1
heterologous	1
heuristics	1
high-precision	1
high-resolution	1
high-signal	1
histone	1
ht_sequencing	1
hybridis	1
hybridized	1
hypertension	1
illumina	1
imaging	1
immunohistochemical	1
immunology	1
impact	1
implementation	1
imprinting	1
imputation	1
index	1
indian-buffet-process	1
in-silico	1
integrity	1
interactis	1
interactive	1
intergenic	1
internal	1
intestine	1
intracellular	1
introns	1
invasive	1
java	1
job	1
kinetic-proofreading	1
kinetics	1
knockout	1
lattice	1
level	1
library	1
life	1
likelihood	1
linearization	1
lipid-membrane	1
logistic	1
log-linear	1
lymphocytes	1
machine	1
macroscopic	1
magnitude	1
manova	1
manual	1
masking	1
mathematical-programming	1
maxent	1
mbei	1
mean	1
measurements	1
measures	1
mechanical	1
medianpolish	1
mediation	1
medical_applications	1
membrane-anchored	1
mesh	1
messengerchemistry	1
messengerchemistrymetabolism	1
meta-analysis	1
metagenomics	1
metaheuristics	1
metastatitic	1
method-validation	1
methylome	1
metric	1
metropolis-hastings	1
microarrays	1
microary	1
microbe	1
microscopy	1
microtubule	1
mitosis	1
model-organism	1
modification	1
modulation	1
module-networks	1
molecular_biology	1
molecules	1
monte-carlo	1
morphogenetic	1
morphology	1
mouse	1
movements	1
mrna-expression	1
ms	1
mulitvariate	1
multichip	1
multidimensional	1
multidisciplinary	1
multi-drug	1
multimodal	1
multisource	1
muscle	1
mutual-information	1
myocardiummetabolism	1
myth	1
naive	1
negative	1
neural	1
neural-networks	1
neuroendocrine_tumours	1
non-gaussian	1
normative	1
nucleosome	1
null-distribution	1
object-oriented-data-analysis	1
object-oriented-design	1
of	1
olfaction	1
oligo-capping	1
oligodt	1
oncogenes	1
oral-medicine	1
organic	1
organization-theory	1
organizing	1
organogenesis	1
oriental	1
original	1
orthologous	1
oscillators	1
oxidative	1
parabolic	1
parameter-degeneracy	1
particle	1
pharmacological	1
phenotypes	1
phosphorylation	1
physical-chemistry	1
physico_chemical	1
pioneering	1
platform	1
poisson	1
polya	1
positive	1
precision	1
preconditioning	1
priming	1
primitives	1
principal	1
principles	1
probes	1
probe-selection	1
probeset	1
probe-summarization	1
productivity	1
prognostic	1
program	1
progression	1
proinflammatory	1
project	1
prokaryotes	1
proliferation	1
promoters	1
proof	1
protection	1
proteins	1
protein-translation	1
proteomic	1
protocol	1
protocols	1
psychophysical	1
p-value	1
quantiles	1
quantum-mechanics	1
quasi	1
reactionmethods	1
reaction-systems	1
re-engineering	1
regulator	1
regulatory	1
regulatory-modules	1
reivew	1
research	1
residual-analysis	1
results	1
retention	1
ribosome	1
rna-metabolism	1
rna-regulation	1
robots	1
robustness	1
rt-pcr	1
sample-size	1
scale-free	1
science	1
scientist	1
screening	1
scripting	1
search	1
segmentation	1
self-organization	1
semantic-similarity	1
sequenc	1
sequence-alignment	1
signaling-pathway	1
signal-processing	1
significance	1
similarity_measures	1
single-cell	1
single-molecule	1
single-target	1
sirna	1
sites	1
smell	1
society	1
spatial	1
spatial-scale	1
spatio-temporal	1
spike-in	1
stability	1
standard-care	1
standardization	1
statistical-mechanics	1
stochastic-process	1
stomach	1
streaming	1
streptococcus	1
surgery	1
symmetry	1
synteny	1
systemic	1
t7	1
t7-primer	1
tags	1
teaching	1
technical	1
termination	1
text-mining	1
theorety	1
thesis	1
time-shift	1
top-down	1
transcription-enhancers	1
transcriptionn	1
transduction	1
transitions	1
trees	1
tuberculosis	1
tumors	1
tumour-growth	1
tumour-suppressor	1
turnover	1
uniqueness	1
universal	1
unlabelled	1
variable_selection	1
variance	1
variants	1
vascular	1
vertebratesgenetics	1
viral-infection	1
virtual	1
virtual_human	1
vision	1
warning	1
western	1
wikipedia	1
workflow	1
workflows	1
writing	1
yeast	1

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