CiteULike: bertelsen's specificity [8 articles]

	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell D. Jones, Roderick V. Jensen, et al.Stephen C. Harris, Roger G. Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan M. Cao, Tzu-Ming M. Chu, Patrick J. Collins, Xiao-Hui H. Fan, Felix W. Frueh, James C. Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest S. Kawasaki, Quan-Zhen Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron L. Peterson, Raj K. Puri, Richard Shippy, Zhenqiang Su, Yongming Andrew A. Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Jane J. Wang, Janet A. Warrington, James C. Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell D. Wolfinger, Weida Tong posted to specificity sensitivity reproducibility microarray gene-expression differential by bertelsen on 2009-12-15 21:26:51 as along with 21 people and 1 group frohike bsamal maximilianh GustavoG mayercd Zephyrus daforerog oliviawi zufar bandrewfox lwaldron mdharsee shikin rdiaz jfr ugengma dswan guhjy GeeSharpMinor ptrobajo Jonesy Bioinformatics
	OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Pieter Bt B. Neerincx, Han Rauwerda, Haisheng Nie, Martien Am A. Groenen, Timo M. Breit, Jack Am A. Leunissen posted to webservices tool target specificity pipelines oligonucleotide microarray high-throughput annotation by bertelsen on 2009-10-28 12:07:39 as
	Specificity and Completion Time Distributions of Biochemical Processes [My Copy] (14 Sep 2009) by Brian Munsky, Golan Bel, Ilya Nemenman posted to systems stochastic specificity processes model kinetic-proofreading dynamical-systems chemical-master-equation biology biochemical analytical by bertelsen on 2009-09-21 16:13:25 as along with 1 person jjray
	What does systems biology mean for drug development? [My Copy] Current medicinal chemistry, Vol. 15, No. 15. (2008), pp. 1520-1528. by André Schrattenholz, Vukić Soskić posted to systems-biology stochasticity specificity review pharmacogenomic multi-target drug-discovery drug disease complexity affinity by bertelsen on 2009-09-05 10:47:26 as along with 1 person flbarroso
	A new approach for selective rat endolymphatic sac epithelium collection to obtain pure specific RNA. [My Copy] Biochemical and biophysical research communications, Vol. 376, No. 3. (21 November 2008), pp. 611-614. by K. Akiyama, T. Miyashita, A. Matsubara, et al.T. Mori, R. Inamoto, A. Nishiyama, N. Mori posted to dissection endolymphatic-sac inner-ear rats specificity by bertelsen on 2009-07-14 17:25:23 as
	Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. [My Copy] Algorithms for molecular biology : AMB, Vol. 4, No. 1. (22 April 2009), 7. by Koji Kadota, Yuji Nakai, Kentaro Shimizu posted to affymetrix differential expression gene-expression normalization pre-processing ranking reproducibility sensitivity specificity by bertelsen on 2009-06-26 22:01:52 as along with 6 people shikin ericrpaquet daforerog dswan renatomilani lptolik
	Specificity of DNA microarray hybridization: characterization, effectors and approaches for data correction [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (1 April 2008), pp. 2395-2405. by Hinanit Koltai, Carmiya Weingarten-Baror posted to hybridization microarray review specificity by bertelsen on 2008-09-17 22:13:44 as along with 3 people guhjy jfr ptrobajo
	Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips. [My Copy] BMC Bioinformatics, Vol. 8 (2007) by M. A. Stalteri, A. P. Harrison posted to analysis analysisinstrumentationmethods and animals array artifacts dna equipment expression factorsgenetics failure gene genetics mice of oligonucleotide probesgenetics profilingmethods reproducibility results sensitivity sequence specificity transcription variation binfbib import by bertelsen on 2007-06-19 17:46:12 as

bertelsen's specificity [8 articles] Export Sort

bertelsen's tags

microarray	225
analysis	131
gene-expression	131
review	126
systems-biology	98
bayesian	95
cancer	78
networks	59
expression	59
software	49
affymetrix	48
gene	47
annotation	45
tool	44
functional-genomics	44
biology	42
model	40
network	40
modelling	39
regulation	38
data	34
bioinformatics	32
disease	30
modeling	29
pathway	29
models	28
genechip	27
rna	27
polyadenylation	26
human	26
gene-regulation	25
drug-discovery	25
multi-scale	24
oligonucleotide	24
clustering	24
ontology	23
differential	23
biochemical	22
probe	22
database	21
inference	21
transcription	20
probability	20
degradation	20
molecular	20
mrna	20
dynamic	19
factor-analysis	19
stochastic	18
probe-level	18
simulation	18
integrative	18
mathematical	18
chemical	17
statistical	17
probabilistic	17
framework	17
structure	17
dirichlet-process	16
nonparametric	16
drug	16
kinetic	16
enrichment-analysis	16
integration	16
computational	16
function	16
theory	15
sequence	15
prediction	15
comparison	15
genomics	15
high-throughput	15
r	15
experiment	15
sampling	15
genome	15
normalization	15
algorithm	15
python	14
complexity	14
statistics	14
regression	14
gene-set-analysis	14
gastric	14
pathways	14
noise	14
biochemical-systems-theory	14
protein	14
interpretation	13
phenotype	13
bioconductor	13
personalized-medicine	13
therapy	13
go	13
classification	13
array	13
control	13
mirna	13
mechanism	12
transcriptome	12
data-integration	12
modules	12
evolution	12
hierarchical	12
latent	12
algorithms	12
clinical	12
promoter	12
sparse	11
test	11
modular	11
oncogenesis	11
non-protein-coding	11
quality	11
computational-biology	11
alternative	11
tumour	11
distribution	11
hypothesis	10
integrating	10
systems	10
mixture	10
proteomics	10
interactions	10
genetic	10
biomedical	10
method	10
mcmc	10
uncertainty	10
quantitative	10
diagnostic	10
transcription-factor	9
design	9
biophysics	9
large-scale	9
visualization	9
machine-learning	9
overview	9
3-utr	9
information	9
s-system	9
methodology	9
therapeutic	9
dna	9
multiple	9
cell-biology	9
discovery	9
insilico	9
pathway-analysis	9
selection	9
quality-control	9
hybridization	8
utr	8
background	8
methods	8
systemic-computation	8
specificity	8
synthetic-biology	8
time-series	8
transcripts	8
heterogeneity	8
measure	8
linear	8
experimental-design	8
rnai	8
ica	8
time-course	7
infection	7
drug-target	7
agent-based	7
tiling	7
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physiology	7
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profiles	7
development	7
webservices	7
emergent-properties	7
rats	7
multivariate	7
pathology	7
ontologies	7
primary	6
graphs	6
matrix-factorization	6
processes	6
summary	6
metabolomics	6
epigenetic	6
sensitivity	6
cdna	6
upt	6
computation	6
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dynamics	6
scientific	6
rna-seq	6
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genetics	6
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reactions	6
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gibbs	5
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pca	5
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binfbib	5
false	5
physical	5
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variational	5
protein-expression	5
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book	5
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endolymphatic-sac	4
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animals	4
cage	4
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toxoplasma	4
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tissue-specific	4
filtering	4
transcript	4
steady-state	4
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signals	4
co-expression	4
mining	4
interface	4
sequence-analysis	4
philosophy	4
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exons	4
genes	4
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approximation	4
hybrid	4
reproducibility	4
nested	4
co-regulation	4
motif	4
survey	4
knowledge-based	4
global	4
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power-laws	4
literature	4
physics	4
graphical-modelling	4
ordinal	4
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entropy	4
dynamical-systems	4
mechanistic	4
5-utr	4
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biomolecular	4
gsea	4
decay	4
mice	4
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circuits	4
pharmacogenomic	4
affy	3
semantic-web	3
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cell-lines	3
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characteristics	3
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programming	2
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subcellular	2
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parts	2
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reasoning	2
lasso	2
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small	2
cells	2
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t-cell	2
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sequential	2
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t-test	2
genotype	2
primer	2
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set	2
articles	2
community	2
gamma	2
plant	2
methylation	2
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comment	2
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3	2
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probit	2
for:birte	2
cdf	2
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epithelial	2
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biopython	2
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game-theory	2
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two-color	2
target	2
density	2
internet	2
matroid	2
pipelines	2
distance	2
miame	2
rma	2
lung	2
mismatch	2
poly	2
cell-population	2
cytoplasmic	2
indian	2
difference	2
false-discovery	2
mass_spectroscopy	2
phenome	2
octave	2
p-bodies	2
plausibility	2