CiteULike: bertelsen's statistical [15 articles]

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations

Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68.

by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin

posted to statistical ontology methodology interpretation integration disease associations by bertelsen on 2009-11-19 21:44:42 as

along with 9 people and 1 group jfr kaarsinogen ruichu guhjy sobolevnrm mikel_egana allysonlister fgibson dullhunk baker-group

Object oriented data analysis: Sets of trees

Annals of Statistics, Vol. 35, No. 5. (2007), pp. 1849-1873.

by Haonan Wang, J. S. Marron

posted to trees statistical pca object-oriented-data-analysis mathematical functional_data_analysis framework by bertelsen on 2009-10-04 01:39:04 as

Theory and Limitations of Genetic Network Inference from Microarray Data

Annals of the New York Academy of Sciences, Vol. 1115, No. Reverse Engineering Biological Networks: Opportunities and Challenges in Computational Methods for Pathway Inference. (December 2007), pp. 51-72.

by Adam A. Margolin, O. Andrea Califan

posted to theory statistical review reverse-engineering network microarray latent inference genetic gene-expression dependence by bertelsen on 2009-09-30 18:01:54 as

along with 2 people talponer roys

A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions

Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2658-2666.

by A. Callegaro, D. Basso, S. Bicciato

posted to gastric-cancer-group tumour transcription tool statistical sequence-analysis ontologies integration gene-expression expression chromosomal-localization chromosomal-expression cancer annotations by bertelsen on 2009-09-30 17:32:49 as

Analyzing gene expression data in terms of gene sets: methodological issues

Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987.

by Jelle J. Goeman, Peter Buhlmann

A systems biology approach for pathway level analysis

Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545.

by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero

Bayesian analysis of systems with random chemical composition: Renormalization-group approach to Dirichlet distributions and the statistical theory of dilution

Physical Review E, Vol. 65, No. 1. (Dec 2001), 011112.

by Marcel O. Vlad, Masa Tsuchiya, Peter Oefner, John Ross

posted to theory systems statistical renormalization-group-analysis dirichlet dilution chemical baysian analysis by bertelsen on 2009-09-06 19:12:03 as

Making sense of the Legendre transform

American Journal of Physics, Vol. 77, No. 7. (2009), pp. 614-622.

by R. K. P. Zia, Edward F. Redish, Susan R. Mckay

posted to mathematical physics statistical transformation by bertelsen on 2009-08-10 14:01:21 as

along with 1 person igorkhavkine

R: A Language and Environment for Statistical Computing

by R Development Core Team

posted to computing r statistical by bertelsen on 2009-06-08 22:08:53 as

along with 5 people asmusolsen humburg kohei-h thegoose michaelbarton

Statistical analysis of DNA microarray data in cancer research.

Clin Cancer Res, Vol. 12, No. 15. (1 August 2006), pp. 4469-4473.

by J. Fan, Y. Ren

posted to analysis cancer microarray review statistical by bertelsen on 2009-06-06 20:33:43 as

along with 1 person jfr

Gene functional annotation by statistical analysis of biomedical articles.

International journal of medical informatics, Vol. 76, No. 8. (August 2007), pp. 601-613.

by T. Theodosiou, L. Angelis, A. Vakali, G. N. Thomopoulos

posted to analysis annotation articles biomedical function functional-genomics statistical by bertelsen on 2009-03-03 23:38:19 as

PYCHEM: a multivariate analysis package for python.

Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2565-2566.

by R. M. Jarvis, D. Broadhurst, H. Johnson, N. M. O'Boyle, R. Goodacre

posted to analysis multivariate python software statistical by bertelsen on 2009-02-14 21:17:16 as

along with 1 person plofje

Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions

BMC Bioinformatics, Vol. 8, No. 1. (24 May 2007), 174.

by Davide Cora', Ferdinando Di Cunto, Michele Caselle, Paolo Provero

posted to 3-utr analysis distribution mammalian oligonucleotide regulation sequence statistical by bertelsen on 2008-06-12 23:40:34 as

along with 4 people and 2 groups andersbj mtagaya GustavoLacerda nuin Bioinformatics microRNA

A systematic statistical linear modeling approach to oligonucleotide array experiments

Mathematical Biosciences, Vol. 176, No. 1. (March 2002), pp. 35-51.

by Tzu-Ming Chu, Bruce Weir, Russ Wolfinger

posted to array linear microarray modeling oligonucleotide probe statistical by bertelsen on 2008-04-29 00:00:54 as

along with 1 person maryee

Accounting for probe-level noise in principal component analysis of microarray data.

Bioinformatics, Vol. 21, No. 19. (2005), pp. 3748-54.

by G. Sanguinetti, M. Milo, M. Rattray, N. D. Lawrence

posted to algorithms analysis analysismethods array bayesian binfbib component data expression gene genetic import interpretation models oligonucleotide principal processes profilingmethods sequence software statistical stochastic by bertelsen on 2007-06-19 17:46:12 as

	From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i63-68. by Pan Du, Gang Feng, Jared Flatow, et al.Jie Song, Michelle Holko, Warren A. Kibbe, Simon M. Lin posted to statistical ontology methodology interpretation integration disease associations by bertelsen on 2009-11-19 21:44:42 as along with 9 people and 1 group jfr kaarsinogen ruichu guhjy sobolevnrm mikel_egana allysonlister fgibson dullhunk baker-group
	Object oriented data analysis: Sets of trees [My Copy] Annals of Statistics, Vol. 35, No. 5. (2007), pp. 1849-1873. by Haonan Wang, J. S. Marron posted to trees statistical pca object-oriented-data-analysis mathematical functional_data_analysis framework by bertelsen on 2009-10-04 01:39:04 as
	Theory and Limitations of Genetic Network Inference from Microarray Data [My Copy] Annals of the New York Academy of Sciences, Vol. 1115, No. Reverse Engineering Biological Networks: Opportunities and Challenges in Computational Methods for Pathway Inference. (December 2007), pp. 51-72. by Adam A. Margolin, O. Andrea Califan posted to theory statistical review reverse-engineering network microarray latent inference genetic gene-expression dependence by bertelsen on 2009-09-30 18:01:54 as along with 2 people talponer roys
	A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2658-2666. by A. Callegaro, D. Basso, S. Bicciato posted to gastric-cancer-group tumour transcription tool statistical sequence-analysis ontologies integration gene-expression expression chromosomal-localization chromosomal-expression cancer annotations by bertelsen on 2009-09-30 17:32:49 as
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted to test statistical set methodology gene-expression gene enrichment-analysis by bertelsen on 2009-09-28 15:26:19 as along with 19 people and 3 groups hzoltan zufar srp33 jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar ghattem jfr ealloza shigepong heliopais guhjy diging_data SIMR bioinformatics BioinfoCIPF BTS-PT-AS-CS
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to systems-biology statistical pathway ontologies magnitude interactions gene-expression functional-genomics analysis by bertelsen on 2009-09-21 16:27:22 as along with 22 people and 2 groups zufar tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	Bayesian analysis of systems with random chemical composition: Renormalization-group approach to Dirichlet distributions and the statistical theory of dilution [My Copy] Physical Review E, Vol. 65, No. 1. (Dec 2001), 011112. by Marcel O. Vlad, Masa Tsuchiya, Peter Oefner, John Ross posted to theory systems statistical renormalization-group-analysis dirichlet dilution chemical baysian analysis by bertelsen on 2009-09-06 19:12:03 as
	Making sense of the Legendre transform [My Copy] American Journal of Physics, Vol. 77, No. 7. (2009), pp. 614-622. by R. K. P. Zia, Edward F. Redish, Susan R. Mckay posted to mathematical physics statistical transformation by bertelsen on 2009-08-10 14:01:21 as along with 1 person igorkhavkine
	R: A Language and Environment for Statistical Computing [My Copy] by R Development Core Team posted to computing r statistical by bertelsen on 2009-06-08 22:08:53 as along with 5 people asmusolsen humburg kohei-h thegoose michaelbarton
	Statistical analysis of DNA microarray data in cancer research. [My Copy] Clin Cancer Res, Vol. 12, No. 15. (1 August 2006), pp. 4469-4473. by J. Fan, Y. Ren posted to analysis cancer microarray review statistical by bertelsen on 2009-06-06 20:33:43 as along with 1 person jfr
	Gene functional annotation by statistical analysis of biomedical articles. [My Copy] International journal of medical informatics, Vol. 76, No. 8. (August 2007), pp. 601-613. by T. Theodosiou, L. Angelis, A. Vakali, G. N. Thomopoulos posted to analysis annotation articles biomedical function functional-genomics statistical by bertelsen on 2009-03-03 23:38:19 as
	PYCHEM: a multivariate analysis package for python. [My Copy] Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2565-2566. by R. M. Jarvis, D. Broadhurst, H. Johnson, N. M. O'Boyle, R. Goodacre posted to analysis multivariate python software statistical by bertelsen on 2009-02-14 21:17:16 as along with 1 person plofje
	Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (24 May 2007), 174. by Davide Cora', Ferdinando Di Cunto, Michele Caselle, Paolo Provero posted to 3-utr analysis distribution mammalian oligonucleotide regulation sequence statistical by bertelsen on 2008-06-12 23:40:34 as along with 4 people and 2 groups andersbj mtagaya GustavoLacerda nuin Bioinformatics microRNA
	A systematic statistical linear modeling approach to oligonucleotide array experiments [My Copy] Mathematical Biosciences, Vol. 176, No. 1. (March 2002), pp. 35-51. by Tzu-Ming Chu, Bruce Weir, Russ Wolfinger posted to array linear microarray modeling oligonucleotide probe statistical by bertelsen on 2008-04-29 00:00:54 as along with 1 person maryee
	Accounting for probe-level noise in principal component analysis of microarray data. [My Copy] Bioinformatics, Vol. 21, No. 19. (2005), pp. 3748-54. by G. Sanguinetti, M. Milo, M. Rattray, N. D. Lawrence posted to algorithms analysis analysismethods array bayesian binfbib component data expression gene genetic import interpretation models oligonucleotide principal processes profilingmethods sequence software statistical stochastic by bertelsen on 2007-06-19 17:46:12 as

bertelsen's statistical [15 articles] Export

bertelsen's tags

microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
expression	59
networks	59
affymetrix	48
gene	47
software	46
annotation	45
functional-genomics	44
tool	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	31
modeling	29
pathway	29
disease	29
models	28
rna	27
genechip	27
polyadenylation	26
human	26
drug-discovery	25
gene-regulation	25
clustering	24
oligonucleotide	24
multi-scale	24
ontology	23
biochemical	22
probe	22
inference	21
probability	20
differential	20
transcription	20
degradation	20
mrna	20
molecular	20
factor-analysis	19
dynamic	19
database	19
integrative	18
simulation	18
mathematical	18
stochastic	18
probe-level	18
probabilistic	17
chemical	17
structure	17
integration	16
function	16
kinetic	16
nonparametric	16
computational	16
dirichlet-process	16
statistical	15
genomics	15
experiment	15
sequence	15
high-throughput	15
theory	15
comparison	15
algorithm	15
drug	15
genome	15
sampling	15
r	15
complexity	14
enrichment-analysis	14
protein	14
framework	14
normalization	14
regression	14
prediction	14
python	14
noise	14
gastric	14
array	13
pathways	13
mirna	13
therapy	13
classification	13
statistics	13
personalized-medicine	13
bioconductor	13
interpretation	13
control	13
biochemical-systems-theory	13
go	13
phenotype	13
transcriptome	12
algorithms	12
clinical	12
latent	12
data-integration	12
hierarchical	12
mechanism	12
promoter	12
modules	12
non-protein-coding	11
tumour	11
computational-biology	11
distribution	11
oncogenesis	11
sparse	11
evolution	11
quality	11
integrating	10
systems	10
quantitative	10
test	10
mixture	10
mcmc	10
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proteomics	10
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modular	10
alternative	10
interactions	10
biomedical	10
transcription-factor	9
dna	9
multiple	9
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biophysics	9
quality-control	9
hypothesis	9
s-system	9
information	9
methodology	9
cell-biology	9
machine-learning	9
discovery	9
insilico	9
3-utr	9
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method	9
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heterogeneity	8
measure	8
hybridization	8
utr	8
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transcripts	8
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ica	8
linear	8
systemic-computation	8
time-series	8
rnai	8
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methods	8
time-course	7
emergent-properties	7
organization	7
drug-target	7
development	7
translation	7
specificity	7
physiology	7
invivo	7
infection	7
pathology	7
tiling	7
multivariate	7
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ontologies	7
webservices	7
pathway-analysis	7
rats	7
mapping	7
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processes	6
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metabolomics	6
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graphs	6
evolutionary-computation	6
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summary	6
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primary	6
cdna	6
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upt	6
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physical	5
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nmd	5
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baysian	5
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cell	5
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false	5
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mice	4
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endolymphatic-sac	4
cage	4
ode	4
gastric-cancer-group	4
signals	4
web	4
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beta	3
learning	3
perturbation	3
cell-lines	3
modularity	3
histological	3
signaling-system	3
calibration	3
analysismethods	3
alignment	3
resonance	3
cells	2
text-mining	2
sequential	2
target	2
foundations	2
stem-cells	2
rma	2
present_absent_call	2
exon	2
mutations	2
missing-value	2
cox-theorem	2
approximate	2
stress	2
mismatch	2
5	2
generative	2
homologous	2
translational-medicine	2
physiome	2
threshold	2
rate-law	2
false-discovery	2
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primer	2
non-specific	2
difference	2
biopython	2
fractal	2
properties	2
gamma	2
poly	2
distance	2
vector	2
acid	2
saturation	2
benchmark	2
user-computer	2
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knowledgebase	2
parts	2
plausibility	2
health	2
plant	2
indian	2
probit	2
miame	2
lung	2
matrix	2
memory	2
t-test	2
pipelines	2
community	2
set	2
buffet	2
mass_spectroscopy	2
copy-number-variation	2
variational-inference	2
phenome	2
cross-platform	2
kullback-leibler	2
nonequilibrium	2
dsrna	2
lasso	2
comment	2
deterministic	2
behaviour	2
perspective	2
heterogeneous	2
preprocessing	2
post-transcription	2
neuroscience	2
mage	2
3	2
cell-migration	2
subcellular	2
pharmacogenomics	2
organ	2
immune-system	2
opensource	2
p-bodies	2
molecular-connectivity-map	2
programming	2
mitochondria	2
chromosome-wide	2
approximations	2
epithelial	2
grid-computing	2
signaling-pathway	2
sage	2
cross-study	2
multi-target	2
proteome	2