bertelsen's stochastic [18 articles] Export

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	Thermodynamic Limit of a Nonequilibrium Steady State: Maxwell-Type Construction for a Bistable Biochemical System [My Copy] Physical Review Letters, Vol. 103, No. 14. (2009), 148103. by Hao Ge, Hong Qian posted to thermodynamics systems-biology stochastic steady-state stability robustness nonequilibrium multi-scale model macroscopic fluctuation emergent-properties chemical-master-equation cell-biology biochemical by bertelsen on 2009-10-06 21:06:38 as along with 1 person jjray
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted to yeast transcription-factor stochastic nuclear localization gene-regulation gene-expression frequency_modulation eukaryotic coordination by bertelsen on 2009-09-25 12:12:45 as along with 8 people and 1 group ellarond siebert dpollard erel10 inesdesantiago raik caseybrown jjray RockmanLab
	Specificity and Completion Time Distributions of Biochemical Processes [My Copy] (14 Sep 2009) by Brian Munsky, Golan Bel, Ilya Nemenman posted to systems stochastic specificity processes model kinetic-proofreading dynamical-systems chemical-master-equation biology biochemical analytical by bertelsen on 2009-09-21 16:13:25 as along with 1 person jjray
	Modelling contrast discrimination data suggest both the pedestal effect and stochastic resonance to be caused by the same mechanism [My Copy] J. Vis., Vol. 8, No. 15. (November 2008), pp. 1-21. by Robbe L. T. Goris, Johan Wagemans, Felix A. Wichmann posted to vision stochastic-resonance stochastic spatial resonance model masking gain-control discrimination contrast by bertelsen on 2009-09-05 09:46:07 as
	Living with noisy genes: how cells function reliably with inherent variability in gene expression. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 36 (2007), pp. 413-434. by Narendra Maheshri, Erin K. O'Shea posted to systems-biology stochastic review noise gene-expression examples by bertelsen on 2009-09-03 18:49:23 as along with 6 people guhjy Zephyrus marcio jjray madhadron margaritis
	Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises. [My Copy] Mathematical biosciences, Vol. 211, No. 2. (February 2008), pp. 342-355. by Bor-Sen S. Chen, Wei-Sheng S. Wu posted to stochastic robust noise networks molecular gene-circuits filtering design circuits by bertelsen on 2009-09-03 18:43:53 as along with 2 people jjray austin
	A systematic molecular circuit design method for gene networks under biochemical time delays and molecular noises [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 103. by Bor S. Chen, Yu T. Chang posted to systems-biology synthetic-biology stochastic-process stochastic noise networks method gene-expression gene-circuits drug-discovery design biochemical by bertelsen on 2009-09-03 17:57:24 as along with 3 people Synthetic_Biology_Literature behindtherabbit ullahmukhtar
	Multivariate analysis of noise in genetic regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 229, No. 4. (August 2004), pp. 501-521. by R. Tomioka posted to systems-biology stochastic networks multivariate genetic gene-regulation gene-expression analysis by bertelsen on 2009-09-01 20:48:07 as along with 2 people ryotat Dangerfc
	Investigating the two-moment characterisation of subcellular biochemical networks [My Copy] Journal of Theoretical Biology, Vol. 260, No. 3. (07 October 2009), pp. 340-352. by Mukhtar Ullah, Olaf Wolkenhauer posted to systems-biology subcellular stochastic probabilistic ode noise networks chemical-master-equation chemical biochemical approximation by bertelsen on 2009-09-01 20:38:00 as along with 2 people jjray tinatoni
	A general method for numerically simulating the stochastic time evolution of coupled chemical reactions [My Copy] Journal of Computational Physics, Vol. 22, No. 4. (December 1976), pp. 403-434. by D. Gillespie posted to time stochastic simulation reactions method chemical algorithm by bertelsen on 2009-09-01 16:54:29 as along with 13 people and 1 group Dangerfc devinli fierykylin jporternj hadesnumb m_j jberro rjoy mazzucco ptupper petermilner matthewhflamm jjray Projet_ENSIMAG
	The chemical Langevin equation [My Copy] The Journal of Chemical Physics, Vol. 113, No. 1. (2000), pp. 297-306. by Daniel T. Gillespie posted to stochastic simulation reactions kinetic dynamic deterministic chemical by bertelsen on 2009-09-01 16:50:58 as along with 8 people chiufanlee Dangerfc cmetzner jporternj sjayanthi jstajic rjoy dylanwalker
	Mechanistic simulations of inflammation: Current state and future prospects [My Copy] Mathematical Biosciences, Vol. 217, No. 1. (January 2009), pp. 1-10. by Y. Vodovotz, G. Constantine, J. Rubin, M. Csete, E. Voit, G. An posted to translational-medicine systems-biology systemic-computation stochastic simulation review personalized-medicine modeling mechanistic mathematical inflammation differential-equation biochemical-systems-theory agent-based by bertelsen on 2009-09-01 16:14:45 as
	Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images [My Copy] Pattern Analysis and Machine Intelligence, IEEE Transactions on In Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. PAMI-6, No. 6. (1984), pp. 721-741. by Stuart Geman, Donald Geman posted to bayesian gibbs sampling stochastic by bertelsen on 2009-07-08 13:11:46 as
	The mean and noise of stochastic gene transcription [My Copy] Journal of Theoretical Biology, Vol. 253, No. 2. (21 July 2008), pp. 271-280. by Moxun Tang posted to transcription stochastic noise mean gene-expression by bertelsen on 2009-07-04 20:57:10 as along with 3 people ddcttrl jjray balicea
	Noise in Gene Expression: Origins, Consequences, and Control [My Copy] Science, Vol. 309, No. 5743. (23 September 2005), pp. 2010-2013. by Jonathan M. Raser, Erin K. O'Shea posted to control gene-expression noise review stochastic by bertelsen on 2009-07-04 20:46:04 as along with 23 people and 2 groups struanmurray pjmaybank pkm kentz Zephyrus guhjy thomaskelder inesdesantiago ddcttrl rklancer monod dayjm xico nirfriedman koller mhucka margaritis suizan shikin dylanwalker kagibbs klo bpcusack WetBiology GeneGo
	Stochasticity in gene expression: from theories to phenotypes [My Copy] Nature Reviews Genetics, Vol. 6, No. 6. (10 May 2005), pp. 451-464. by Mads Kaern, Timothy C. Elston, William J. Blake, James J. Collins posted to theory systems-biology stochastic-resonance stochastic review phenotype heterogeneity gene-expression environment disease differentiation development cell by bertelsen on 2009-07-04 20:41:48 as along with 9 people dbikard pkm boko4ikameto bcondon ccots wnpx tabu balabu timflutre
	What Is Stochastic Resonance? Definitions, Misconceptions, Debates, and Its Relevance to Biology [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000348. by Mark D. Mcdonnell, Derek Abbott posted to stochastic-resonance stochastic signal-processing resonance noise neuroscience biology by bertelsen on 2009-06-16 12:47:31 as along with 16 people josepe Sergey_gerbek iml sylvain_chevallier fccoelho thegoose Gorzomagnificent reyez bayesian trfield flips kentsis fgibson jjray marekrud GeeSharpMinor
	Accounting for probe-level noise in principal component analysis of microarray data. [My Copy] Bioinformatics, Vol. 21, No. 19. (2005), pp. 3748-54. by G. Sanguinetti, M. Milo, M. Rattray, N. D. Lawrence posted to algorithms analysis analysismethods array bayesian binfbib component data expression gene genetic import interpretation models oligonucleotide principal processes profilingmethods sequence software statistical stochastic by bertelsen on 2007-06-19 17:46:12 as

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microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
expression	59
networks	59
affymetrix	48
gene	47
software	46
annotation	45
functional-genomics	44
tool	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	31
modeling	29
pathway	29
disease	29
models	28
rna	27
genechip	27
polyadenylation	26
human	26
drug-discovery	25
gene-regulation	25
clustering	24
oligonucleotide	24
multi-scale	24
ontology	23
biochemical	22
probe	22
inference	21
probability	20
differential	20
transcription	20
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mrna	20
molecular	20
factor-analysis	19
dynamic	19
database	19
integrative	18
simulation	18
mathematical	18
stochastic	18
probe-level	18
probabilistic	17
chemical	17
structure	17
integration	16
function	16
kinetic	16
nonparametric	16
computational	16
dirichlet-process	16
statistical	15
genomics	15
experiment	15
sequence	15
high-throughput	15
theory	15
comparison	15
algorithm	15
drug	15
genome	15
sampling	15
r	15
complexity	14
enrichment-analysis	14
protein	14
framework	14
normalization	14
regression	14
prediction	14
python	14
noise	14
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array	13
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mirna	13
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bioconductor	13
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go	13
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latent	12
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mechanism	12
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modules	12
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distribution	11
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evolution	11
quality	11
integrating	10
systems	10
quantitative	10
test	10
mixture	10
mcmc	10
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proteomics	10
genetic	10
modular	10
alternative	10
interactions	10
biomedical	10
transcription-factor	9
dna	9
multiple	9
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large-scale	9
selection	9
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biophysics	9
quality-control	9
hypothesis	9
s-system	9
information	9
methodology	9
cell-biology	9
machine-learning	9
discovery	9
insilico	9
3-utr	9
design	9
method	9
therapeutic	9
overview	8
methods	8
transcripts	8
measure	8
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linear	8
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rnai	8
ica	8
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hybridization	8
synthetic-biology	8
experimental-design	8
utr	8
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invivo	7
infection	7
time-course	7
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development	7
translation	7
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rats	7
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upt	6
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matrix-factorization	6
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dependence	5
correction	5
membrane	5
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error	5
encode	5
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nmd	5
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gaussian	5
gene-function	5
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localization	5
false	5
animals	4
sequence-analysis	4
pharmacogenomic	4
mice	4
decay	4
high-dimensional	4
endolymphatic-sac	4
cage	4
ode	4
gastric-cancer-group	4
signals	4
web	4
entropy	4
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prognosis	4
mechanistic	4
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dynamical-systems	4
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grid	4
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exons	4
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motif	4
global	4
map	4
physics	4
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ordinal	4
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5-utr	4
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interface	4
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literature	4
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dirichlet	3
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chip-seq	3
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5	2
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chromosome-wide	2
approximations	2
epithelial	2
grid-computing	2
signaling-pathway	2
sage	2
cross-study	2
multi-target	2
proteome	2

bertelsen's stochastic [18 articles] Export

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