bertelsen's tool [42 articles] Export

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	DNA microarrays: a powerful genomic tool for biomedical and clinical research. [My Copy] Molecular medicine (Cambridge, Mass.), Vol. 13, No. 9-10. (t 2007), pp. 527-541. by Victor Trevino, Francesco Falciani, Hugo A. Barrera-Saldaña posted to tool review multidisciplinary microarray clinical biomedical by bertelsen on 2009-11-18 20:42:42 as
	OligoRAP - an Oligo Re-Annotation Pipeline to improve annotation and estimate target specificity. [My Copy] BMC proceedings, Vol. 3 Suppl 4 (2009) by Pieter Bt B. Neerincx, Han Rauwerda, Haisheng Nie, Martien Am A. Groenen, Timo M. Breit, Jack Am A. Leunissen posted to webservices tool target specificity pipelines oligonucleotide microarray high-throughput annotation by bertelsen on 2009-10-28 12:07:39 as
	Building Blocks For Variational Bayesian Learning Of Latent Variable Models [My Copy] Journal of Machine Learning Research, Vol. 8 (2007), pp. 155-201. by Tapani Raiko, Harri Valpola, Markus Harva, Juha Karhunen posted to variational-inference tool software latent bayesian by bertelsen on 2009-10-13 17:06:10 as along with 1 person rorymulvaney
	A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2658-2666. by A. Callegaro, D. Basso, S. Bicciato posted to gastric-cancer-group tumour transcription tool statistical sequence-analysis ontologies integration gene-expression expression chromosomal-localization chromosomal-expression cancer annotations by bertelsen on 2009-09-30 17:32:49 as
	EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (06 February 2009), 50. by Michael Dondrup, Stefan P. Albaum, Thasso Griebel, et al.Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane K. Kleindt, Helge Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann posted to tool standard software microarray miame mage integration data analysis by bertelsen on 2009-09-30 17:22:13 as along with 4 people and 1 group barriot guhjy cassj dswan Bioinformatics
	Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context. [My Copy] BMC bioinformatics, Vol. 8 (02 June 2007), 179. by Markus Weniger, Julia C. Engelmann, Jörg Schultz posted to webservices visualization tool software proteomics pathways metabolic integration genomics gene-expression functional-genomics analysis by bertelsen on 2009-09-28 15:54:07 as along with 10 people and 1 group barriot daforerog udivi GeeSharpMinor guhjy jfr rdiaz ealloza frohike fmenolascina BioinfoCIPF
	Ontological analysis of gene expression data: current tools, limitations, and open problems [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595. by Purvesh Khatri, Sorin Draghici posted to tool review ontologies microarray gene-expression enrichment-analysis comparison analysis by bertelsen on 2009-09-27 20:19:00 as along with 18 people and 1 group darian jperkins ipark-kaist gjuggler isakemal Stew shikin diamantis Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck Bioinformatics - CRUK
	Pathways to the analysis of microarray data. [My Copy] Trends in biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435. by R. Keira Curtis, Matej Oresic, Antonio Vidal-Puig posted to tool review pathways pathway-analysis microarray integration gene-expression enrichment-analysis analysis by bertelsen on 2009-09-27 20:16:12 as along with 11 people and 2 groups thomaskelder udivi AlexanderPico jfr saman_vp snuppepuppan textoris Ayest tardigrade ealloza heliopais ConklinLab BioinfoCIPF
	Taverna: a tool for building and running workflows of services [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W729-732. by Duncan Hull, Katy Wolstencroft, Robert Stevens, et al.Carole Goble, Mathew R. Pocock, Peter Li, Tom Oinn posted to workflows webservices tool bioinformatics by bertelsen on 2009-09-25 11:03:54 as along with 18 people and 1 group fisherp barriot egonw vijyendra pekrau peterli tjtaylor Cortel guhjy shikin daforerog druvus moborg wnpx asddd mroos dullhunk alanrw AID
	Comparison of PubMed, Scopus, Web of Science, and Google Scholar: strengths and weaknesses [My Copy] FASEB J., Vol. 22, No. 2. (1 February 2008), pp. 338-342. by Matthew E. Falagas, Eleni I. Pitsouni, George A. Malietzis, Georgios Pappas posted to tool search internet databases biomedical bioinformatics by bertelsen on 2009-09-21 16:20:09 as along with 62 people and 3 groups sfalsharif cyounkin Tomste cphelps aaltenburger radagabriel bhengeveld pick600 mawds khan004 niathena jeffcrow jmparks R_C_Cordeiro lyss fabiopietrucci tjpp tarokiritani meikipp reginacastro nuttpo CulCog msampson rodney abc623 tnhh jshigh gwallau sniklas MurphysLab jago teachingaging thegoose bibliotecaria jenniferwilms beska rickl druvus ceft tanyacovi6 carelcad LEONRANGEL microcosmosinagotable MARCOUNAM eudominguezmartin artaban421 frohike nhoussos daforerog lesikv simdoc lmichan rrbarb A_Hoogendam cyrille hpiwowar JSicot Gaetan ashko lilith guhjy dullhunk Nursing Essentials LabDros Integrative Expertise for Global Health
	Standards and ontologies in computational systems biology. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 211-222. by Herbert M. Sauro, Frank T. Bergmann posted to visualization tool systems-biology standard software ontology modelling languages computational by bertelsen on 2009-09-01 17:38:13 as along with 2 people jonathancooper jmuhlich
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to visualization tool systems-biology standard software regulation networks languages interactis graphical-modelling biochemical by bertelsen on 2009-08-31 15:39:29 as along with 38 people and 3 groups singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes [My Copy] Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1284-1287. by Pawan K. Dhar, Tan C. Meng, Sandeep Somani, et al.Li Ye, Kishore Sakharkar, Arun Krishnan, Azmi B. M. Ridwan, Sebastian H. Wah, Mandar Chitre, Zhu Hao posted to tool systems-biology software simulation processes modelling grid by bertelsen on 2009-08-31 14:52:52 as along with 3 people mchitre jmeppley kalvala
	Genomes2Drugs: identifies target proteins and lead drugs from proteome data. [My Copy] PloS one, Vol. 4, No. 7. (10 July 2009), e6195. by David Toomey, Heinrich C. Hoppe, Marian P. Brennan, Kevin B. Nolan, Anthony J. Chubb posted to tool software drug-discovery drug by bertelsen on 2009-08-25 10:58:03 as along with 3 people guhjy brianb sjcockell
	Expression Profiler: next generation--an online platform for analysis of microarray data [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W465-470. by Misha Kapushesky, Patrick Kemmeren, Aedin C. Culhane, et al.Steffen Durinck, Jan Ihmels, Christine Korner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma posted to analysis gene-expression microarray tool webservices by bertelsen on 2009-07-27 10:41:21 as along with 4 people pengchy rdiaz fisherp siebert
	Building biomedical web communities using a semantically aware content management system. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 129-138. by Sudeshna Das, Lisa Girard, Tom Green, Louis Weitzman, Alister Lewis-Bowen, Tim Clark posted to biomedical community content-management-system management scientific semantic-web software tool by bertelsen on 2009-07-23 17:01:48 as along with 8 people jfr artaban421 dbk guhjy fgibson allysonlister natstreet druvus
	A-MADMAN: annotation-based microarray data meta-analysis tool. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (29 June 2009), 201. by Andrea Bisognin, Alessandro Coppe, Francesco Ferrari, et al.Davide Risso, Chiara Romualdi, Silvio Bicciato, Stefania Bortoluzzi posted to annotation gene-expression large-scale meta-analysis microarray normalization software tool by bertelsen on 2009-07-08 11:59:05 as along with 6 people and 1 group daforerog ptrobajo dswan guhjy shikin neils Bioinformatics
	The Connectivity Map: a new tool for biomedical research [My Copy] Nature Reviews Cancer, Vol. 7, No. 1. (01 January 2007), pp. 54-60. by Justin Lamb posted to biomedical cancer disease drug-discovery research review tool by bertelsen on 2009-07-04 19:48:18 as along with 4 people ipark-kaist mingzhi wimufi ndeah
	Probabilistic retrieval and visualization of biologically relevant microarray experiments [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i145-153. by Jose Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, Samuel Kaski posted to experiment gene-expression microarray probabilistic repository selection tool visualization by bertelsen on 2009-07-04 19:45:24 as along with 6 people jfr ngehlenborg greg ptrobajo guhjy shikin
	In Silico Generation of Alternative Hypotheses Using Causal Mapping (CMAP) [My Copy] PLoS ONE, Vol. 4, No. 4. (29 April 2009), e5378. by Gabriel E. Weinreb, Maryna T. Kapustina, Ken Jacobson, Timothy C. Elston posted to causal generative hypothesis mapping systems-biology tool by bertelsen on 2009-07-04 19:24:26 as along with 2 people rdiaz tmmurali
	Messenger RNA expression profiling using DNA microarray technology: diagnostic tool, scientific analysis or un-interpretable data? [My Copy] International journal of molecular medicine, Vol. 21, No. 1. (January 2008), pp. 13-17. by M. S. Walker, T. A. Hughes posted to analysis diagnostic microarray mrna-expression profiling scientific tool by bertelsen on 2009-06-06 20:28:45 as along with 1 person guhjy
	DAVID gene ID conversion tool. [My Copy] Bioinformation, Vol. 2, No. 10. (2008), pp. 428-430. by Da Wei a. . W. Huang, Brad T. Sherman, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki posted to bioinformatics conversion databases identification software tool by bertelsen on 2009-05-18 15:07:28 as along with 3 people jfr daforerog guhjy
	bioNMF: a versatile tool for non-negative matrix factorization in biology [My Copy] BMC Bioinformatics, Vol. 7 (28 July 2006), 366. by Alberto Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M. Carazo, Roberto D. Pascual-Marqui posted to biology clustering matrix-factorization nonnegative software tool by bertelsen on 2009-03-13 14:47:12 as along with 1 person jfr
	Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W341-346. by Fatima Al-Shahrour, Jose Carbonell, Pablo Minguez, et al.Stefan Goetz, Ana Conesa, Joaquin Tarraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquin Dopazo posted to analysis functional-genomics ontology pathway software tool by bertelsen on 2009-03-12 15:49:40 as along with 3 people sgoetz neils balicea
	Annotation-Modules: A tool for finding significant combinations of multisource annotations for gene lists. [My Copy] Bioinformatics (Oxford, England) (8 May 2008) by Michael Hackenberg, Rune Matthiesen posted to annotation functional-genomics modules multisource tool by bertelsen on 2009-03-12 15:48:21 as along with 4 people and 1 group jfr guhjy barriot sobolevnrm baker-group
	Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [My Copy] Nucl. Acids Res., Vol. 37, No. 1. (1 January 2009), pp. 1-13. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to comparison enrichment-analysis review summary survey tool by bertelsen on 2009-03-12 15:26:42 as along with 44 people and 2 groups darian chasmand hzoltan ipark-kaist giovenko lwaldron jcaddy antonkratz Zephyrus shikin yaredo tonamswish ddunbar robfsouza Keywan daforerog ptrobajo rdiaz Stew inesdesantiago heliopais AlexanderPico aviad_work ekotelnikova frohike aramesh2 jfr zufar ilyashl dolchan paszkows lptolik thomaskelder AbnerCYH neils tmmurali ealloza barriot druvus renatomilani pengchy phoenixzxl guhjy sjcockell Bioinformatics - CRUK ConklinLab
	Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3674-3676. by Ana Conesa, Stefan Gotz, Juan M. Garcia-Gomez, Javier Terol, Manuel Talon, Montserrat Robles posted to alignment annotation go ontology sequence software tool by bertelsen on 2009-03-12 15:24:27 as along with 10 people seb1 Thaverkamp karinlag nlapalu fbristow Garamonfok sgoetz talponer imelda aconesa
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment comparison sequence software tool by bertelsen on 2009-03-12 15:23:20 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000029. by Karthik Devarajan posted to biology computation high-throughput interpretation matrix-factorization nonnegative parts review tool by bertelsen on 2009-03-10 13:54:48 as along with 13 people kshameer svozil rdiaz ptrobajo jfr aramesh2 roys bayesian bpcusack cabbagesofdoom luispedro guhjy mikaelhuss
	The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists [My Copy] Genome Biology, Vol. 8, No. 9. (04 September 2007), R183. by Da W. Huang, Brad T. Sherman, Qina Tan, et al.Jack R. Collins, Gregory W. Alvord, Jean Roayaei, Robert Stephens, Michael W. Baseler, Clifford H. Lane, Richard A. Lempicki posted to annotation classification function functional-genomics tool by bertelsen on 2009-03-09 13:35:23 as along with 9 people VGreiff ndiaz guhjy aalibes dragonrez jfr rdiaz mellabee heliopais
	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources [My Copy] Nature Protocols, Vol. 4, No. 1. (18 December 2008), pp. 44-57. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to analysis annotation gene-expression high-throughput pathway tool by bertelsen on 2009-03-07 22:26:27 as along with 16 people and 2 groups darian rschulz jperkins tonamswish operon VGreiff jfr Stew Sonix dswan guhjy wimufi brianb idonaldson mrochman daforerog Bioinformatics - CRUK Bioinformatics
	DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists [My Copy] Nucl. Acids Res., Vol. 35, No. Web Server issue. (18 June 2007), gkm415. by Da W. Huang, Brad T. Sherman, Qina Tan, et al.Joseph Kir, David Liu, David Bryant, Yongjian Guo, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki posted to annotation bioinformatics database gene-expression tool by bertelsen on 2009-03-07 21:37:52 as along with 3 people VGreiff guhjy jfr
	GOLEM: an interactive graph-based gene-ontology navigation and analysis tool [My Copy] BMC Bioinformatics, Vol. 7 (10 October 2006), 443. by Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya posted to analysis gene go interactive ontology tool visualization by bertelsen on 2009-03-03 23:13:46 as along with 6 people and 2 groups guhjy tardigrade ealloza giovanni jdiggans carlk BioinfoCIPF GeschwindLab
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by M. Ashburner, C. A. Ball, J. A. Blake, et al.D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, G. Sherlock posted to gene go ontology tool by bertelsen on 2009-03-03 21:29:10 as along with 76 people and 8 groups suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae 8_01 BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Small molecules and chemical tools at the interface. [My Copy] Nature chemical biology, Vol. 4, No. 7. (July 2008), pp. 382-386. by R. H. Newman, J. Zhang posted to biology chemical tool by bertelsen on 2009-02-15 00:51:16 as along with 1 person guhjy
	PYCHEM: a multivariate analysis package for python [My Copy] Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2565-2566. by Jarvis, M. Roger, Broadhurst, et al. David, Johnson, Helen, O'Boyle, M. Noel, Goodacre, Royston posted to analysis multivariate python tool by bertelsen on 2009-02-14 22:38:48 as along with 3 people kemalpak Ayest daevans
	MPI for Python [My Copy] Journal of Parallel and Distributed Computing, Vol. 65, No. 9. (September 2005), pp. 1108-1115. by Lisandro Dalcin, Rodrigo Paz, Mario Storti posted to interface multiple parallel processes python software tool by bertelsen on 2009-02-14 21:11:12 as along with 3 people mabi fpalm josepe
	Modular Toolkit for Data Processing (MDP): A Python Data Processing Framework. [My Copy] Frontiers in neuroinformatics, Vol. 2 (2008) by Tiziano Zito, Niko Wilbert, Laurenz Wiskott, Pietro Berkes posted to data python software tool by bertelsen on 2009-02-14 21:00:55 as along with 2 people rawphi sdaehne
	JCLEC: a Java framework for evolutionary computation [My Copy] Soft Computing - A Fusion of Foundations, Methodologies and Applications, Vol. 12, No. 4. (28 February 2008), pp. 381-392. by Sebastián Ventura, Cristóbal Romero, Amelia Zafra, José Delgado, César Hervás posted to algorithms computation evolution evolutionary-computation java object-oriented-design optimization software tool by bertelsen on 2008-09-17 10:07:10 as along with 2 people and 3 groups axeltan nojhan Evolutionary Computation Software EvolutionaryComputation Metaheuristics
	Biopython: Python tools for computational biology [My Copy] SIGBIO Newsl., Vol. 20, No. 2. (August 2000), pp. 15-19. by Brad Chapman, Jeffrey Chang posted to biology biopython computational python tool by bertelsen on 2008-07-01 18:23:24 as along with 2 people eesruiz edvin
	The Bio* toolkits--a brief overview. [My Copy] Briefings in Bioinformatics, Vol. 3, No. 3. (September 2002), pp. 296-302. by H. Mangalam posted to bioinformatics overview tool by bertelsen on 2008-07-01 18:22:10 as along with 5 people csjonline chad_davis moborg dullhunk noby
	The untranslated regions of eukaryotic mRNAs: Structure, function, evolution and bioinformatic tools for their analysis [My Copy] Brief Bioinform, Vol. 1, No. 3. (1 January 2000), pp. 236-249. by Graziano Pesole, Giorgio Grillo, Alessandra Larizza, Sabino Liuni posted to analysis eukaryotic evolution function mrna structure tool utr bioinformatics by bertelsen on 2008-04-23 23:30:40 as

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microarray	223
analysis	129
review	125
gene-expression	124
systems-biology	95
bayesian	92
cancer	78
expression	59
networks	57
affymetrix	48
gene	46
annotation	44
functional-genomics	44
software	44
biology	42
tool	42
model	40
network	38
regulation	38
modelling	36
data	34
bioinformatics	31
disease	29
modeling	29
pathway	28
genechip	27
models	27
rna	27
human	26
polyadenylation	26
drug-discovery	25
clustering	24
multi-scale	24
oligonucleotide	24
gene-regulation	23
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
differential	20
molecular	20
mrna	20
probability	20
transcription	20
dynamic	19
factor-analysis	19
database	18
integrative	18
probe-level	18
stochastic	18
chemical	17
mathematical	17
probabilistic	17
simulation	17
dirichlet-process	16
function	16
integration	16
kinetic	16
nonparametric	16
algorithm	15
comparison	15
computational	15
drug	15
experiment	15
genome	15
genomics	15
high-throughput	15
r	15
sampling	15
sequence	15
statistical	15
structure	15
theory	15
enrichment-analysis	14
gastric	14
noise	14
normalization	14
prediction	14
python	14
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array	13
biochemical-systems-theory	13
bioconductor	13
classification	13
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go	13
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mirna	13
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personalized-medicine	13
phenotype	13
protein	13
statistics	13
therapy	13
algorithms	12
clinical	12
complexity	12
hierarchical	12
latent	12
mechanism	12
modules	12
promoter	12
transcriptome	12
computational-biology	11
distribution	11
evolution	11
non-protein-coding	11
oncogenesis	11
quality	11
sparse	11
tumour	11
alternative	10
genetic	10
integrating	10
mcmc	10
mixture	10
modular	10
proteomics	10
quantitative	10
systems	10
test	10
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3-utr	9
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cell-biology	9
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discovery	9
dna	9
hypothesis	9
information	9
interactions	9
large-scale	9
machine-learning	9
method	9
methodology	9
multiple	9
quality-control	9
selection	9
s-system	9
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transcription-factor	9
visualization	9
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heterogeneity	8
hybridization	8
ica	8
insilico	8
linear	8
measure	8
methods	8
overview	8
rnai	8
synthetic-biology	8
systemic-computation	8
time-series	8
transcripts	8
utr	8
agent-based	7
binary	7
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drug-target	7
emergent-properties	7
infection	7
invivo	7
mapping	7
multivariate	7
organization	7
pathology	7
physiology	7
rats	7
specificity	7
tiling	7
time-course	7
translation	7
webservices	7
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cdna	6
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epigenetic	6
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graphs	6
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matrix-factorization	6
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nonlinear	6
pathway-analysis	6
pattern	6
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primary	6
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upt	6
apoptosis	5
baysian	5
bias	5
binfbib	5
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book	5
cell-cycle	5
comparative	5
correction	5
dependence	5
encode	5
environment	5
error	5
eukaryotic	5
false	5
gaussian	5
gene-function	5
genome-wide	5
gibbs	5
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import	5
invitro	5
kidney	5
localization	5
measurement	5
medical	5
membrane	5
metabolic-network	5
ncrna	5
nmd	5
nonsense-mediated	5
normal	5
ontologies	5
optimization	5
pca	5
physical	5
process	5
profiling	5
profilingmethods	5
protein-expression	5
quality-assessment	5
quantitative-trait-loci	5
sensitivity	5
signal	5
simulations	5
splicing	5
synthesis	5
time	5
topological	5
treatment	5
truncated	5
unknown	5
variation	5
variational	5
5-utr	4
animals	4
approximation	4
biomolecular	4
cage	4
cell	4
circuits	4
co-expression	4
co-regulation	4
decay	4
diversity	4
dynamics	4
endolymphatic-sac	4
entropy	4
estimation	4
exons	4
exploratory	4
filtering	4
gastric-cancer-group	4
gene-set-analysis	4
global	4
graphical-modelling	4
grid	4
guide	4
high-dimensional	4
hybrid	4
inflammation	4
inhibitors	4
inner-ear	4
interface	4
knowledge-based	4
literature	4
local	4
map	4
mechanistic	4
metabolic-control-analysis	4
mice	4
mining	4
mixtures	4
motif	4
nested	4
ode	4
ordinal	4
pharmacogenomic	4
philosophy	4
physics	4
post-transcriptional	4
power-laws	4
prognosis	4
sequence-analysis	4
signals	4
signature	4
signatures	4
standard	4
steady-state	4
survey	4
tissue-specific	4
toxoplasma	4
transcript	4
transformation	4
web	4
accuracy	3
adjustment	3
affinity	3
affy	3
alignment	3
amplification	3
analysismethods	3
assessment	3
associations	3
automatic	3
bacteria	3
beta	3
calibration	3
cell-lines	3
characteristics	3
chemical-master-equation	3
chemotherapy	3
chip-seq	3
chromatin	3
chromosomal-expression	3
combinatorial	3
component	3
correlation	3
dataset	3
differential-equation	3
differentiation	3
dirichlet	3
distributions	3
dynamical-systems	3
enzyme	3
evaluation	3
exchangeability	3
fdr	3
gene-circuits	3
generalized	3
genes	3
genotyping	3
histological	3
hmm	3
humans	3
identifiability	3
independence	3
interference	3
introduction	3
languages	3
learning	3
management	3
medicine	3
metastatic	3
model-selection	3
modularity	3
multinomial	3
natural	3
nonnegative	3
nuclear	3
parasitology	3
pattern-recognition	3
performance	3
perturbation	3
polymerase	3
random	3
ranking	3
regulators	3
renormalization-group-analysis	3
repository	3
reproducibility	3
resonance	3
resource	3
robust	3
signaling-system	3
signal-transduction	3
snp	3
stochastic-resonance	3
structural-biology	3
tumorigenesis	3
unsupervised	3
3	2
5	2
acid	2
anatomy	2
approximate	2
approximations	2
behaviour	2
benchmark	2
biopython	2
buffet	2
cdf	2
cell-migration	2
cell-population	2
cells	2
chromosome-wide	2
comment	2
community	2
constraint-based-modelling	2
copy-number-variation	2
cox-theorem	2
cross-hybridization	2
cross-laboratory	2
cross-platform	2
cross-study	2
cytoplasmic	2
definition	2
density	2
detection	2
deterministic	2
difference	2
distance	2
dsrna	2
epithelial	2
evidence	2
exon	2
false-discovery	2
for:birte	2
format	2
foundations	2
fractal	2
game-theory	2
gamma	2
generative	2
genotype	2
grid-computing	2
health	2
heart	2
heterogeneous	2
homologous	2
image-processing	2
immune-system	2
indian	2
internet	2
isoform	2
knowledgebase	2
kullback-leibler	2
lasso	2
logic	2
lung	2
mage	2
mass_spectroscopy	2
matlab	2
matrix	2
matroid	2
memory	2
metabolic	2
methylation	2
miame	2
mismatch	2
missing-value	2
mitochondria	2
molecular-connectivity-map	2
multi-target	2
mutations	2
neuroscience	2
nonequilibrium	2
non-specific	2
nucleic	2
numerical	2
octave	2
oncogene-addiction	2
opensource	2
organ	2
parallel	2
parts	2
p-bodies	2
perspective	2
pharmacogenomics	2
phenome	2
physiome	2
pipelines	2
plant	2
plausibility	2
poly	2
post-transcription	2
preprocessing	2

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