bertelsen's transcription [20 articles] Export

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	From signatures to models: understanding cancer using microarrays [My Copy] Nature Genetics, Vol. 37 Suppl (01 June 2005), pp. S38-S45. by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller posted to transcription signatures processes networks multi-scale molecular modules modular models microarray mechanistic gene-regulation disease comparative cancer by bertelsen on 2009-10-05 15:56:21 as along with 13 people and 1 group chasmand roys lwaldron cswinburne aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin srp33 GeneGo
	Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 2. (13 January 2004), pp. 641-646. by Katy C. Kao, Young-Lyeol Yang, Riccardo Boscolo, Chiara Sabatti, Vwani Roychowdhury, James C. Liao posted to transcriptome transcription regulators network factor-analysis component by bertelsen on 2009-10-04 16:51:37 as
	A locally adaptive statistical procedure (LAP) to identify differentially expressed chromosomal regions [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2658-2666. by A. Callegaro, D. Basso, S. Bicciato posted to gastric-cancer-group tumour transcription tool statistical sequence-analysis ontologies integration gene-expression expression chromosomal-localization chromosomal-expression cancer annotations by bertelsen on 2009-09-30 17:32:49 as
	FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions [My Copy] Genome Biology, Vol. 10, No. 4. (2009), R39. by Jessica Severin, Andrew Waterhouse, Hideya Kawaji, et al.Timo Lassmann, Erik van Nimwegen, Piotr Balwierz, Michiel de Hoon, David Hume, Piero Carninci, Yoshihide Hayashizaki, Harukazu Suzuki, Carsten Daub, Alistair Forrest posted to transcription-factor transcription software regulator promoters network mirna integrating gene-regulation gene-expression database by bertelsen on 2009-09-27 16:12:38 as along with 10 people jfr Garamonfok rdiaz YukaH ealloza guhjy pengchy natstreet druvus dolchan
	Bayesian sparse hidden components analysis for transcription regulation networks. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 6. (15 March 2006), pp. 739-746. by Chiara Sabatti, Gareth M. James posted to bayesian factor-analysis gene-expression integrative networks regulation sparse systems-biology transcription by bertelsen on 2009-08-10 00:27:12 as along with 4 people engelhardt lp2 hms edwardmorrissey
	Antisense transcription: a critical look in both directions. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 66, No. 1. (15 January 2009), pp. 94-112. by T. Beiter, E. Reich, R. W. Williams, P. Simon posted to antisense function gene-expression regulation review rna transcription by bertelsen on 2009-07-22 22:08:27 as along with 5 people bartjacobse dswan guhjy maximilianh erel10
	Genome-wide transcription and the implications for genomic organization [My Copy] Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 413-423. by Philipp Kapranov, Aarron T. Willingham, Thomas R. Gingeras posted to disease evolution genome-wide genomics modular organization review transcription by bertelsen on 2009-07-22 22:05:24 as along with 23 people and 5 groups Jporci bartjacobse daforerog coela hagechouchin443 emptyhb pengchy guhjy balicea xico dchughes kengg sebastien_vigneau zwang ajgentles Ema asddd hanansh antonkratz vietanh0 maximilianh GeeSharpMinor inesdesantiago Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
	Studying chromosome-wide transcriptional networks: new insights into disease? [My Copy] Genome medicine, Vol. 1, No. 5. (11 May 2009) by Philipp Kapranov posted to annotation chromosome-wide disease exons network transcription by bertelsen on 2009-07-22 22:01:50 as along with 2 people guhjy daforerog
	Signatures of gene expression noise in cellular systems. [My Copy] Progress in biophysics and molecular biology (11 June 2009) by Julia Rausenberger, Christian Fleck, Jens Timmer, Markus Kollmann posted to gene-expression noise signature systems-biology transcription by bertelsen on 2009-07-04 20:59:36 as
	The mean and noise of stochastic gene transcription [My Copy] Journal of Theoretical Biology, Vol. 253, No. 2. (21 July 2008), pp. 271-280. by Moxun Tang posted to transcription stochastic noise mean gene-expression by bertelsen on 2009-07-04 20:57:10 as along with 3 people ddcttrl jjray balicea
	The discovery of transcriptional modules by a two-stage matrix decomposition approach [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 473-479. by Li, Huai, Sun, Yu, Zhan, Ming posted to gene-expression matrix-factorization microarray modules nonlinear sparse transcription by bertelsen on 2009-06-13 09:43:41 as
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to chip-seq invivo motif regulation tissue-specific transcription transcription-enhancers by bertelsen on 2009-03-07 22:43:45 as along with 23 people and 2 groups hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1851-1854. by Pascal Preker, Jesper Nielsen, Susanne Kammler, et al.Soren Lykke-Andersen, Marianne S. Christensen, Christophe K. Mapendano, Mikkel H. Schierup, Torben H. Jensen posted to human promoter transcription by bertelsen on 2009-01-30 10:37:21 as along with 10 people and 1 group inesdesantiago bartjacobse gdb caseybrown lflorez sebastien_vigneau djkt strands diaz0058 jbhiatt 4th_floor_JC
	Kinetic modeling and simulation of in vitro transcription by phage T7 RNA polymerase. [My Copy] Biotechnology and bioengineering, Vol. 72, No. 5. (5 March 2001), pp. 548-561. by S. Arnold, M. Siemann, K. Scharnweber, M. Werner, S. Baumann, M. Reuss posted to invitro kinetic modeling polymerase rna simulation t7 transcription by bertelsen on 2008-06-10 22:30:09 as
	Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom posted to gene-regulation network transcription by bertelsen on 2008-04-29 21:25:10 as along with 7 people natstreet druvus heliopais dquest kengg bootsy guhjy
	Dissecting complex transcriptional responses using pathway-level scores based on prior information. [My Copy] BMC bioinformatics, Vol. 8 Suppl 6 (2007) by H. J. Bussemaker, L. D. Ward, A. Boorsma posted to microarray network pathway prior regulation transcription by bertelsen on 2008-04-29 17:21:55 as along with 3 people shikin ptrobajo guhjy
	Computational methods for transcriptional regulation. [My Copy] Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221. by E. D. Siggia posted to computing microarray regulation transcription by bertelsen on 2008-04-29 14:34:53 as along with 7 people and 2 groups barry dpollard koller Borelli nklee balicea jjray Bioinformatics EisenLab
	Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. [My Copy] Science (New York, N.Y.), Vol. 308, No. 5725. (20 May 2005), pp. 1149-1154. by Jill Cheng, Philipp Kapranov, Jorg Drenkow, et al.Sujit Dike, Shane Brubaker, Sandeep Patel, Jeffrey Long, David Stern, Hari Tammana, Gregg Helt, Victor Sementchenko, Antonio Piccolboni, Stefan Bekiranov, Dione K. Bailey, Madhavan Ganesh, Srinka Ghosh, Ian Bell, Daniela S. Gerhard, Thomas R. Gingeras posted to array map tiling transcription by bertelsen on 2008-04-18 20:47:46 as along with 11 people and 1 group AndersI bartjacobse haarcuba xingxu hagechouchin443 inesdesantiago GeeSharpMinor karbak tmmurali tuck jasonflannick CPI UU
	Cross-talks between Transcription and Post-transcriptional Events within a 'mRNA Factory' [My Copy] J Biochem (Tokyo), Vol. 142, No. 1. (July 2007), pp. 11-15. by Masatoshi Hagiwara, Takayuki Nojima posted to post-transcription transcription by bertelsen on 2007-09-05 00:02:44 as along with 1 person guhjy
	Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips. [My Copy] BMC Bioinformatics, Vol. 8 (2007) by M. A. Stalteri, A. P. Harrison posted to analysis analysisinstrumentationmethods and animals array artifacts dna equipment expression factorsgenetics failure gene genetics mice of oligonucleotide probesgenetics profilingmethods reproducibility results sensitivity sequence specificity transcription variation binfbib import by bertelsen on 2007-06-19 17:46:12 as

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microarray	223
analysis	130
review	126
gene-expression	125
systems-biology	97
bayesian	93
cancer	78
networks	59
expression	59
affymetrix	48
gene	47
software	47
annotation	45
tool	44
functional-genomics	44
biology	42
network	40
model	40
modelling	39
regulation	38
data	34
bioinformatics	31
pathway	29
disease	29
modeling	29
models	28
rna	27
genechip	27
human	26
polyadenylation	26
drug-discovery	25
gene-regulation	25
multi-scale	24
oligonucleotide	24
clustering	24
ontology	23
biochemical	22
probe	22
inference	21
degradation	20
differential	20
probability	20
mrna	20
transcription	20
molecular	20
dynamic	19
factor-analysis	19
database	19
stochastic	18
simulation	18
mathematical	18
integrative	18
probe-level	18
structure	17
chemical	17
probabilistic	17
computational	16
integration	16
nonparametric	16
function	16
kinetic	16
dirichlet-process	16
comparison	15
drug	15
algorithm	15
high-throughput	15
r	15
theory	15
genomics	15
sampling	15
experiment	15
genome	15
sequence	15
statistical	15
prediction	14
enrichment-analysis	14
framework	14
regression	14
complexity	14
noise	14
gastric	14
protein	14
python	14
normalization	14
interpretation	13
control	13
classification	13
statistics	13
array	13
go	13
therapy	13
bioconductor	13
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personalized-medicine	13
mirna	13
biochemical-systems-theory	13
phenotype	13
hierarchical	12
modules	12
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latent	12
data-integration	12
mechanism	12
transcriptome	12
algorithms	12
promoter	12
tumour	11
oncogenesis	11
computational-biology	11
sparse	11
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evolution	11
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interactions	10
biomedical	10
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mixture	10
systems	10
mcmc	10
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3-utr	9
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insilico	9
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rnai	8
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pathway-analysis	8
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linear	8
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ica	8
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utr	8
background	8
experimental-design	8
heterogeneity	8
methods	8
time-series	8
synthetic-biology	8
agent-based	7
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organization	7
nonlinear	7
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physiology	7
binary	7
drug-target	7
development	7
webservices	7
ontologies	7
rats	7
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infection	7
tiling	7
invivo	7
translation	7
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graphs	6
prior	6
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rna-seq	6
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dynamics	6
reactions	6
metabolic-network	6
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epigenetic	6
evolutionary-computation	6
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pattern	6
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upt	6
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tumor	6
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membrane	5
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error	5
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gaussian	5
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physical	5
book	5
binfbib	5
comparative	5
cell	5
truncated	5
signal	5
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encode	5
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time	5
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gibbs	5
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cell-cycle	5
normal	5
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apoptosis	5
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ordinal	4
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philosophy	4
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inhibitors	4
mining	4
co-expression	4
map	4
5-utr	4
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circuits	4
mixtures	4
post-transcriptional	4
guide	4
steady-state	4
power-laws	4
decay	4
grid	4
dynamical-systems	4
tissue-specific	4
co-regulation	4
knowledge-based	4
diversity	4
transformation	4
mice	4
mechanistic	4
inner-ear	4
web	4
literature	4
entropy	4
prognosis	4
transcript	4
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approximation	4
inflammation	4
ode	4
cage	4
standard	4
endolymphatic-sac	4
animals	4
biomolecular	4
signatures	4
nested	4
survey	4
pharmacogenomic	4
exploratory	4
high-dimensional	4
signals	4
physics	4
graphical-modelling	4
global	4
motif	4
local	4
fdr	3
metabolic	3
structural-biology	3
component	3
performance	3
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hmm	3
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chromosomal-expression	3
renormalization-group-analysis	3
model-selection	3
adjustment	3
tumorigenesis	3
modularity	3
parasitology	3
correlation	3
independence	3
natural	3
enzyme	3
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multinomial	3
pattern-recognition	3
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chip-seq	3
resource	3
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resonance	3
identifiability	3
associations	3
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beta	3
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interference	3
chemical-master-equation	3
histological	3
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humans	3
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nuclear	3
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repository	3
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signaling-system	3
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ranking	3
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introduction	3
chromatin	3
snp	3
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affy	3
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amplification	3
perturbation	3
stochastic-resonance	3
polymerase	3
genes	3
semantic-web	3
distributions	3
generalized	3
gene-circuits	3
cell-lines	3
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pharmacogenomics	2
primer	2
immune-system	2
distance	2
present_absent_call	2
cross-laboratory	2
gamma	2
chromosome-wide	2
dsrna	2
format	2
copy-number-variation	2
poly	2
mismatch	2
rma	2
matroid	2
game-theory	2
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missing-value	2
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oncogene-addiction	2
robustness	2
regulatory-modules	2
set	2
signaling-pathway	2
behaviour	2
programming	2
space	2
mutations	2
homologous	2
text-mining	2
matrix	2
opensource	2
plant	2
kullback-leibler	2
mass_spectroscopy	2
miame	2
evidence	2
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stress	2
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cells	2
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protozoan	2
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buffet	2
organ	2
5	2
approximate	2
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mage	2
sage	2
tissue-level	2
microarrays	2
sequential	2
non-specific	2
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memory	2
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small	2
numerical	2
t-test	2
community	2
epithelial	2
plausibility	2
matlab	2
logic	2
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exon	2
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octave	2
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user-computer	2
physiome	2
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difference	2
false-discovery	2
cox-theorem	2
foundations	2
nucleic	2
mitochondria	2
comment	2
pipelines	2
lung	2

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