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	Cluster conservation as a novel tool for studying protein-protein interactions evolution [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 2. (1 May 2008), pp. 621-630. by Ofer Rahat, Assif Yitzhaky, Gideon Schreiber posted to interface-properties ppi-evolution by bicko on 2009-02-23 22:03:26 as along with 3 people cjeans marti hryk
	Estimating the size of the human interactome [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6959-6964. by Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, et al.Ronald Stewart, Hyeong J. An, Michael Lappe, Carsten Wiuf posted to ppi-evolution ppi-review protein-networks by bicko on 2009-02-01 18:23:35 as along with 23 people and 1 group aelef thegoose2 tharris zwang chrissp100 sanchezbuelna guhjy phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez bpcusack C. elegans / WormBase
	Characterization of protein-protein interfaces. [My Copy] The protein journal, Vol. 27, No. 1. (January 2008), pp. 59-70. by C. Yan, F. Wu, R. L. Jernigan, D. Dobbs, V. Honavar posted to interface-properties ppi-evolution by bicko on 2008-04-04 13:29:40 as along with 3 people mkotlyar wonaya Lombardo_7
	Localization of protein-binding sites within families of proteins. [My Copy] Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360. by D. Korkin, F. P. Davis, A. Sali posted to interaction-site-prediction ppi-evolution structure-comparison by bicko on 2008-01-09 16:16:30 as along with 4 people and 4 groups barry tjimenez marcius wilbur structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to ppi-evolution promiscuous-ppis protein-design by bicko on 2007-09-18 14:12:51 as along with 9 people and 3 groups bmduggan allmensch msuarezdiez jwm Einat dpollard Scis0000002 phoenixzxl marck structural_bioinformatics Bioinformatics EisenLab
	The origins and evolution of functional modules: lessons from protein complexes. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 507-517. by Jose B. Pereira-Leal, Emmanuel D. Levy, Sarah A. Teichmann posted to quaternary-structure ppi-evolution ppi-database by bicko on 2007-01-19 12:05:05 as along with 6 people biomcgary saket agustinarce choonpeng cjeans cmzmasek
	Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions [My Copy] Protein Sci, Vol. 14, No. 2. (1 February 2005), pp. 316-328. by Yuhua Duan, Boojala V. Reddy, Yiannis N. Kaznessis posted to ppi-evolution guided-docking docking-scoring-function docking-algorithm by bicko on 2007-01-15 11:08:21 as along with 3 people mkotlyar ameetsoni carlescorbi
	Biochemistry. Proteins in a small world. [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1882-1883. by T. O. Yeates, M. Beeby posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-12 18:45:24 as along with 1 person and 1 group lfriedl kdl
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-09 18:06:43 as along with 24 people and 2 groups daveGerrard ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
	3D Complex: A Structural Classification of Protein Complexes [My Copy] PLoS Computational Biology, Vol. 2, No. 11. (17 November 2006), e155. by Emmanuel D. Levy, Jose B. Pereira-Leal, Cyrus Chothia, Sarah A. Teichmann posted to quaternary-structure protein-networks ppi-evolution ppi-database by bicko on 2007-01-09 15:43:33 as along with 3 people and 1 group flbarroso chad_davis Einat structural_bioinformatics
	Exploiting sequence and structure homologs to identify protein-protein binding sites. [My Copy] Proteins, Vol. 62, No. 3. (15 March 2006), pp. 630-640. by J. L. Chung, W. Wang, P. E. Bourne posted to ppi-evolution interaction-site-prediction by bicko on 2007-01-09 11:47:27 as along with 2 people and 2 groups marcius ameetsoni BioinfoCIPF SGU-CIPF
	Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. [My Copy] Bioinformatics, Vol. 18 Suppl 1 (2002) by T. Pupko, R. E. Bell, I. Mayrose, F. Glaser, N. Ben-Tal posted to interaction-site-prediction ppi-evolution by bicko on 2006-08-17 11:37:43 as along with 2 people xwbcn sriram_s
	Distinguishing structural and functional restraints in evolution in order to identify interaction sites. [My Copy] J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1487-1504. by V. Chelliah, L. Chen, T. L. Blundell, S. C. Lovell posted to blundell-group docking-algorithm guided-docking interaction-site-prediction ppi-evolution by bicko on 2006-06-29 19:07:59 as along with 8 people and 1 group chrn rabio massivemayhem cat_worth MaggieYe medic0747 cjeans zwang structural_bioinformatics
	ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 163-164. by F. Glaser, T. Pupko, I. Paz, et al.R. E. Bell, D. Bechor-Shental, E. Martz, N. Ben-Tal posted to interaction-site-prediction interface-properties ppi-evolution by bicko on 2006-06-29 19:03:47 as along with 4 people and 1 group tomjad oteri chrn siebertm Structural Biology Group TorVergata
	Correlated sequence-signatures as markers of protein-protein interaction. [My Copy] J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692. by E. Sprinzak, H. Margalit posted to 1st-yr-report interaction-partner-prediction ppi-evolution by bicko on 2006-06-29 18:48:08 as along with 10 people behindtherabbit chad_davis maryee dyermd grahamc cjeans lilith wilbur Rhys phoenixzxl
	An accurate, sensitive, and scalable method to identify functional sites in protein structures. [My Copy] Journal of molecular biology, Vol. 326, No. 1. (7 February 2003), pp. 255-261. by H. Yao, D. M. Kristensen, I. Mihalek, et al.M. E. Sowa, C. Shaw, M. Kimmel, L. Kavraki, O. Lichtarge posted to 1st-yr-report evolutionary-trace interaction-site-prediction ppi-evolution by bicko on 2006-06-29 18:24:21 as along with 5 people qluo chrn beeblebrox nickolay sriram_s
	Co-evolutionary analysis reveals insights into protein-protein interactions. [My Copy] Journal of molecular biology, Vol. 324, No. 1. (15 November 2002), pp. 177-192. by C. S. Goh, F. E. Cohen posted to 1st-yr-report interaction-partner-prediction ppi-evolution by bicko on 2006-06-29 18:17:39 as along with 2 people chica ruvido
	Efficient Restraints for Protein-Protein Docking by Comparison of Observed Amino Acid Substitution Patterns with those Predicted from Local Environment [My Copy] Journal of Molecular Biology, Vol. 357, No. 5. (14 April 2006), pp. 1669-1682. by Vijayalakshmi Chelliah, Tom L. Blundell, Juan Fernandez-Recio posted to docking-algorithm guided-docking interaction-site-prediction ppi-evolution by bicko on 2006-06-23 01:15:08 as along with 4 people flbarroso ima drastic cjeans
	Scoring docking models with evolutionary information. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 275-280. by M. Tress, D. de Juan, O. Graña, et al.M. J. Gómez, P. Gómez-Puertas, J. M. González, G. López, A. Valencia posted to docking-algorithm docking-scoring-function guided-docking interface-properties ppi-evolution by bicko on 2006-06-21 15:02:12 as along with 3 people and 2 groups marcius ameetsoni cjeans BioinfoCIPF SGU-CIPF
	Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking. [My Copy] J Mol Biol, Vol. 344, No. 3. (26 November 2004), pp. 781-795. by X. Li, O. Keskin, B. Ma, R. Nussinov, J. Liang posted to hot-spots interface-properties ppi-evolution by bicko on 2006-06-21 14:55:39 as along with 10 people and 2 groups barry baaden nickolay j3xucite bluvsh1 xz grahamc Evangelia ladab paolomarcatili structural_bioinformatics Bioinformatics
	Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 832-845. by Inbal Halperin, Haim Wolfson, Ruth Nussinov posted to evolutionary-trace guided-docking interaction-site-prediction ppi-evolution by bicko on 2006-03-03 11:28:32 as along with 11 people dfdong mgomes qluo RebeccaHamer gbart ramensky cjeans tale mingzhi friendpine Lombardo_7
	A hot spot of binding energy in a hormone-receptor interface. [My Copy] Science, Vol. 267, No. 5196. (20 January 1995), pp. 383-386. by T. Clackson, J. A. Wells posted to hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 15:23:00 as along with 1 person boris_aguilar
	Convergent solutions to binding at a protein-protein interface. [My Copy] Science, Vol. 287, No. 5456. (18 February 2000), pp. 1279-1283. by W. L. DeLano, M. H. Ultsch, A. M. de Vos, J. A. Wells posted to interface-properties ppi-evolution ppi-experimental-methods by bicko on 2006-02-20 15:19:27 as along with 2 people matzke higueruelo
	Conservation of polar residues as hot spots at protein interfaces. [My Copy] Proteins, Vol. 39, No. 4. (1 June 2000), pp. 331-342. by Z. Hu, B. Ma, H. Wolfson, R. Nussinov posted to hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 14:54:13 as
	Anatomy of hot spots in protein interfaces [My Copy] Journal of Molecular Biology, Vol. 280, No. 1. (03 July 1998), pp. 1-9. by Andrew A. Bogan, Kurt S. Thorn posted to guided-docking hot-spots interaction-site-prediction interface-properties ppi-evolution by bicko on 2006-02-20 14:47:25 as along with 3 people and 2 groups csrocha barry timg structural_bioinformatics Bioinformatics
	Unraveling hot spots in binding interfaces: progress and challenges. [My Copy] Current opinion in structural biology, Vol. 12, No. 1. (February 2002), pp. 14-20. by Warren L. DeLano posted to hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 14:40:07 as along with 3 people ubcg08l Dualsystems higueruelo
	Character and evolution of protein–protein interfaces [My Copy] Physical Biology, Vol. 2, No. 2. (27 May 2005), pp. S36-S43. by Ivica Reš, Olivier Lichtarge posted to evolutionary-trace hot-spots interface-properties ppi-evolution by bicko on 2006-02-20 14:20:30 as along with 2 people beeblebrox higueruelo
	WHISCY: What information does surface conservation yield? Application to data-driven docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 3. (15 May 2006), pp. 479-489. by Sjoerd J. de Vries, Aalt D. van Dijk, Alexandre M. Bonvin posted to docking-algorithm docking-scoring-function guided-docking interaction-site-prediction ppi-evolution by bicko on 2006-02-17 16:55:08 as along with 2 people gloria marti
	Highly specific protein-protein interactions, evolution and negative design. [My Copy] Phys Biol, Vol. 1, No. 3-4. (December 2004), pp. 166-172. by R. P. Sear posted to ppi-evolution ppi-review by bicko on 2006-02-17 15:31:50 as
	Specific protein-protein binding in many-component mixtures of proteins. [My Copy] Phys Biol, Vol. 1, No. 1-2. (June 2004), pp. 53-60. by R. P. Sear posted to ppi-evolution protein-networks scale-free by bicko on 2006-02-17 15:27:50 as
	Statistical analysis of domains in interacting protein pairs. [My Copy] Bioinformatics (27 October 2004) by Tom M W M. Nye, Carlo Berzuini, Walter R R. Gilks, M Madan M. Babu, Sarah A A. Teichmann posted to ppi-evolution quaternary-structure by bicko on 2005-11-15 16:46:53 as along with 3 people hununu satsumakenji choonpeng
	Conservation helps to identify biologically relevant crystal contacts. [My Copy] Journal of molecular biology, Vol. 313, No. 2. (19 October 2001), pp. 399-416. by W. S. Valdar, J. M. Thornton posted to crystal-contacts interface-properties ppi-evolution quaternary-structure by bicko on 2005-11-07 15:19:01 as along with 3 people cjeans Evangelia jwm
	Identification of protein oligomerization states by analysis of interface conservation. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 6. (13 March 2001), pp. 2990-2994. by A. H. Elcock, J. A. McCammon posted to crystal-contacts interface-properties ppi-evolution quaternary-structure by bicko on 2005-11-07 15:15:31 as along with 2 people Evangelia marti
	Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? [My Copy] Protein science : a publication of the Protein Society, Vol. 13, No. 1. (January 2004), pp. 190-202. by D. R. Caffrey, S. Somaroo, J. D. Hughes, J. Mintseris, E. S. Huang posted to interface-properties ppi-evolution by bicko on 2005-11-04 17:13:35 as along with 4 people chica cjeans Evangelia higueruelo
	Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. [My Copy] Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2850-2855. by A. S. Aytuna, A. Gursoy, O. Keskin posted to interaction-partner-prediction ppi-evolution by bicko on 2005-11-01 10:40:46 as along with 4 people and 2 groups apaydin barry j3xucite dyermd structural_bioinformatics Bioinformatics
	Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships. [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3360-3368. by J. Espadaler, O. Romero-Isart, R. M. Jackson, B. Oliva posted to interaction-partner-prediction ppi-evolution by bicko on 2005-11-01 10:39:16 as along with 2 people and 2 groups barry baldo structural_bioinformatics Bioinformatics
	Prediction of protein--protein interaction sites in heterocomplexes with neural networks. [My Copy] Eur J Biochem, Vol. 269, No. 5. (March 2002), pp. 1356-1361. by P. Fariselli, F. Pazos, A. Valencia, R. Casadio posted to interaction-site-prediction interface-properties ppi-evolution by bicko on 2005-10-20 16:05:54 as along with 1 person cjeans
	Structure, function, and evolution of transient and obligate proteinâprotein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted to obligate-transient ppi-evolution ppi-review quaternary-structure by bicko on 2005-10-17 11:15:59 as along with 12 people and 3 groups dfdong timg mgomes barry bjorns wiehe julianm chad_davis cjeans Evangelia marti higueruelo structural_bioinformatics ZLAB Bioinformatics
	Diversity of protein-protein interactions. [My Copy] EMBO J, Vol. 22, No. 14. (15 July 2003), pp. 3486-3492. by I. M. Nooren, J. M. Thornton posted to ppi-evolution ppi-review quaternary-structure by bicko on 2005-10-14 12:31:01 as along with 4 people chad_davis drastic Evangelia higueruelo
	The relationship between sequence and interaction divergence in proteins. [My Copy] Journal of molecular biology, Vol. 332, No. 5. (3 October 2003), pp. 989-998. by P. Aloy, H. Ceulemans, A. Stark, R. B. Russell posted to interface-properties ppi-evolution quaternary-structure by bicko on 2005-10-14 10:33:46 as along with 7 people chica bpcusack karbak chad_davis drastic ruvido RebeccaHamer

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