bicko's protein-networks [23 articles] Export Sort

Recent papers added to bicko's library classified by the tag protein-networks. You can also see everyone's protein-networks.

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	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dumpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to ppi-experimental-methods protein-networks by bicko on 2009-02-25 22:03:05 as along with 31 people and 10 groups aceol tomhebbron ajbattle mgomes Scis0000002 lawraga saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike carlk ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, José M. Peregrín-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, C. James Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to ppi-experimental-methods protein-networks by bicko on 2009-02-25 21:56:31 as along with 30 people and 5 groups aceol mpotamias paccanarolab ajbattle mgomes jxl cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim Paccanaro Lab kdl EBI-regulation BioinfoCIPF SGU-CIPF
	Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae [My Copy] Mol Cell Proteomics, Vol. 6, No. 3. (1 March 2007), pp. 439-450. by Sean R. Collins, Patrick Kemmeren, Xue-Chu Zhao, et al.Jack F. Greenblatt, Forrest Spencer, Frank C. P. Holstege, Jonathan S. Weissman, Nevan J. Krogan posted to protein-networks by bicko on 2009-02-25 16:10:41 as along with 10 people and 1 group mtaschuk ajbattle lpfernandes elenaz czeller nickluscombe grahamc roys csanford paolomarcatili EBI-regulation
	Estimating the size of the human interactome [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 6959-6964. by Michael P. H. Stumpf, Thomas Thorne, Eric de Silva, et al.Ronald Stewart, Hyeong J. An, Michael Lappe, Carsten Wiuf posted to ppi-evolution ppi-review protein-networks by bicko on 2009-02-01 18:23:35 as along with 23 people and 1 group aelef thegoose2 tharris zwang chrissp100 sanchezbuelna guhjy phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez bpcusack C. elegans / WormBase
	Protein interactions from complexes: a structural perspective. [My Copy] Comp Funct Genomics (2007) by L. Hakes, D. L. Robertson, S. G. Oliver, S. C. Lovell posted to ppi-experimental-methods protein-networks quaternary-structure by bicko on 2008-08-12 20:19:20 as along with 2 people marti alexg
	Identification of transient hub proteins and the possible structural basis for their multiple interactions. [My Copy] Protein science : a publication of the Protein Society, Vol. 17, No. 1. (1 January 2008), pp. 72-78. by Miho Higurashi, Takashi Ishida, Kengo Kinoshita posted to promiscuous-ppis protein-flexibility protein-networks by bicko on 2008-01-09 18:07:50 as along with 5 people somak chad_davis balicea allmensch marti
	Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178. by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Marti-Renom, Baldo Oliva posted to motif-discovery protein-networks by bicko on 2008-01-09 16:11:45 as along with 1 person zwang
	Comparison of Human Protein-Protein Interaction Maps. [My Copy] Bioinformatics (19 January 2007) by Matthias E E. Futschik, Gautam Chaurasia, Hanspeter Herzel posted to protein-networks by bicko on 2007-08-15 18:53:55 as along with 4 people guhjy jfr grahamc frohike
	Towards drugs targeting multiple proteins in a systems biology approach. [My Copy] Curr Top Med Chem, Vol. 7, No. 10. (2007), pp. 943-951. by O. Keskin, A. Gursoy, B. Ma, R. Nussinov posted to drug-discovery protein-networks systems-biology by bicko on 2007-08-15 17:23:18 as along with 1 person higueruelo
	Structural principles for the multispecificity of small GTP-binding proteins. [My Copy] Biochemistry, Vol. 43, No. 22. (8 June 2004), pp. 6833-6840. by V. Biou, J. Cherfils posted to interface-properties promiscuous-ppis protein-networks by bicko on 2007-05-18 13:46:47 as along with 1 person laurabailey
	Biochemistry. Proteins in a small world. [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1882-1883. by T. O. Yeates, M. Beeby posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-12 18:45:24 as along with 1 person and 1 group lfriedl kdl
	Relating Three-Dimensional Structures to Protein Networks Provides Evolutionary Insights [My Copy] Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941. by Philip M. Kim, Long J. Lu, Yu Xia, Mark B. Gerstein posted to quaternary-structure protein-networks ppi-review ppi-evolution by bicko on 2007-01-09 18:06:43 as along with 24 people and 2 groups daveGerrard ucbcjbm pablocarb mgomes rsaito MatthiasReimann cerca lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
	3D Complex: A Structural Classification of Protein Complexes [My Copy] PLoS Computational Biology, Vol. 2, No. 11. (17 November 2006), e155. by Emmanuel D. Levy, Jose B. Pereira-Leal, Cyrus Chothia, Sarah A. Teichmann posted to quaternary-structure protein-networks ppi-evolution ppi-database by bicko on 2007-01-09 15:43:33 as along with 3 people and 1 group flbarroso chad_davis Einat structural_bioinformatics
	Global topological features of cancer proteins in the human interactome [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2291-2297. by Pall F. Jonsson, Paul A. Bates posted to systems-biology snps scale-free protein-networks by bicko on 2006-09-11 14:04:45 as along with 7 people and 2 groups frohike aalibes marcius ealloza IbnBio namtonthat dejori BioinfoCIPF SGU-CIPF
	Protein–protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach [My Copy] Physical Biology, Vol. 2, No. 2. (20 May 2005), pp. S24-S35. by Ozlem Keskin, Buyong Ma, Kristina Rogale, K. Gunasekaran, Ruth Nussinov posted to interface-properties ppi-review protein-networks systems-biology by bicko on 2006-06-14 12:22:26 as along with 3 people marti choonpeng higueruelo
	Ligand selectivity and competition between enzymes in silico. [My Copy] Nat Biotechnol, Vol. 22, No. 8. (August 2004), pp. 1039-1045. by A. Macchiarulo, I. Nobeli, J. M. Thornton posted to protein-networks by bicko on 2006-02-20 15:25:33 as along with 7 people pablocarb benlin ucbcjbm BragilMassoud kuhn tny noby
	Oligomeric protein structure networks: insights into protein-protein interactions. [My Copy] BMC bioinformatics, Vol. 6 (2005) by K. V. Brinda, Saraswathi Vishveshwara posted to interface-properties protein-networks proteins-as-graphs by bicko on 2006-02-17 16:24:25 as along with 5 people itmeson tny choonpeng gisle higueruelo
	Specific protein-protein binding in many-component mixtures of proteins. [My Copy] Phys Biol, Vol. 1, No. 1-2. (June 2004), pp. 53-60. by R. P. Sear posted to ppi-evolution protein-networks scale-free by bicko on 2006-02-17 15:27:50 as
	Topology of small-world networks of protein-protein complex structures. [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1311-1315. by A. del Sol, H. Fujihashi, P. O'Meara posted to hot-spots interface-properties protein-networks proteins-as-graphs scale-free by bicko on 2006-01-29 12:20:30 as along with 2 people choonpeng higueruelo
	Algorithms for protein interaction networks. [My Copy] Biochem Soc Trans, Vol. 33, No. Pt 3. (June 2005), pp. 530-534. by M. Lappe, L. Holm posted to protein-networks by bicko on 2005-11-07 14:37:34 as along with 2 people kuhn maralena
	PSIbase: a database of Protein Structural Interactome map (PSIMAP). [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2541-2543. by S. Gong, G. Yoon, I. Jang, et al.D. Bolser, P. Dafas, M. Schroeder, H. Choi, Y. Cho, K. Han, S. Lee, H. Choi, M. Lappe, L. Holm, S. Kim, D. Oh, J. Bhak posted to interface-properties ppi-database protein-networks by bicko on 2005-11-07 14:36:05 as
	Taking the mystery out of biological networks. [My Copy] EMBO Rep, Vol. 5, No. 4. (April 2004), pp. 349-350. by P. Aloy, R. B. Russell posted to protein-networks scale-free by bicko on 2005-10-19 16:37:57 as along with 3 people chad_davis wnpx mmt
	Ten thousand interactions for the molecular biologist [My Copy] Nature Biotechnology, Vol. 22, No. 10. (06 October 2004), pp. 1317-1321. by Patrick Aloy, Robert B. Russell posted to interface-properties ppi-review protein-networks by bicko on 2005-10-13 10:37:11 as along with 14 people and 2 groups krapnik ucbcjbm flbarroso mikaellund baaden jwm chad_davis dullhunk dgront drastic ruvido Evangelia higueruelo timg Radiation_Damage Stressosome

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jbcb	171
interface-properties	114
docking-algorithm	69
ppi-database	52
interaction-site-prediction	48
ppi-evolution	40
docking-scoring-function	37
hot-spots	34
drug-discovery	32
snps	31
bioinformatics-database	30
interaction-partner-prediction	29
ppi-review	29
quaternary-structure	29
blundell-group	28
1st-yr-report	28
protein-networks	23
capri	21
guided-docking	20
ppi-therapeutics	20
review	19
modelling-interactions	18
protein-flexibility	17
crystal-contacts	16
residue-contacts	16
ppi-experimental-methods	15
proteins-as-graphs	15
docking-benchmark	14
evolution	14
voronoi	13
systems-biology	12
alanine-scanning	12
classics	11
energy-landscapes	11
contact-pairing-preferences	10
structure-comparison	10
structure-prediction	9
snp-impact-prediction	9
double-cycle-mutants	9
sequence-alignment	8
ion-pairs	8
pdb-toolkit	7
ppi-disease-mutations	7
docking-symmetry	7
evolutionary-trace	6
side-chain-prediction	6
atomic-radii	6
fourier-transform	6
thesis	6
small-molecule-docking	5
scale-free	5
ppi-clustering	5
protein-design	5
pairwise-substitution-matrices	5
promiscuous-ppis	4
docking-applications	4
nuclear-receptors	4
conformational-change	4
snp-collaborations	3
substitution-matrices	3
casp	3
software	3
co-evolution	3
structural-genomics	3
obligate-transient	3
stability	3
journal-club	3
pdb-sequence	2
geometry	2
url-decay	2
cancer	2
ligand-binding	2
protein-disorder	2
motif-discovery	2
small-molecule-resource	1
fgf	1
kinases	1
molecular-dynamics	1
chemogenomics	1

bicko's protein-networks [23 articles] Export Sort

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