biehl's library 76 articles Export

	How citation distortions create unfounded authority: analysis of a citation network. [My Copy] BMJ (Clinical research ed.), Vol. 339, No. jul20_3. (23 July 2009), b2680. by Steven A. Greenberg posted to no-tag by biehl on 2009-08-29 20:39:24 as along with 26 people freesci timothee-poisot alhoori CulCog guhjy jrw jclau VGreiff silberbauer Gaetan ysh0315 thegoose dullhunk MichaelBishop cjhall tnhh pawelsobko timflutre pak mfenner Zephyrus ghermy_jr tkeitt dartar stringertheory daforerog
	Single-molecule force spectroscopy distinguishes target binding modes of calmodulin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14361-14366. by Jan P. Junker, Matthias Rief posted to structure dynamics docking by biehl on 2009-08-29 20:36:43 as
	Efficient protein depletion by genetically controlled deprotection of a dormant N-degron [My Copy] Mol Syst Biol, Vol. 5 (28 April 2009) by Christof Taxis, Gunter Stier, Roberta Spadaccini, Michael Knop posted to no-tag by biehl on 2009-04-29 05:37:28 as along with 1 person MarcJungbluth
	ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble [My Copy] BMC Bioinformatics, Vol. 10 (08 April 2009), 104. by Jorge, Javier Sancho posted to no-tag by biehl on 2009-04-16 07:24:58 as along with 1 person RamuAnandakrishnan
	Similarity Measures for Protein Ensembles [My Copy] PLoS ONE, Vol. 4, No. 1. (15 January 2009), e4203. by Kresten Lindorff-Larsen, Jesper Ferkinghoff-Borg posted to toread by biehl on 2009-01-15 13:36:11 as along with 8 people and 3 groups anuragsethi klexa apaydin sobolevnrm gane5h barry jmccammon reyez baker-group structural_bioinformatics McCammon
	TCP: a tool for designing chimera proteins based on the tertiary structure information [My Copy] BMC Bioinformatics, Vol. 10 (07 January 2009), 9. by Takashi Yoneya, Reina Nishida posted to toread_whenprinted by biehl on 2009-01-15 09:22:30 as along with 1 person agustinarce
	Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families [My Copy] BMC Structural Biology, Vol. 8 (26 December 2008), 55. by Ratna, Bernard Offmann posted to toread_whenprinted by biehl on 2008-12-30 12:11:10 as
	Solvent dramatically affects protein structure refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20239-20244. by Gaurav Chopra, Christopher M. Summa, Michael Levitt posted to no-tag by biehl on 2008-12-27 09:31:43 as along with 7 people and 4 groups rabio pavanghatty mijam dgront barry sobolevnrm itmeson structural_bioinformatics McCammon Bioinformatics baker-group
	Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (12 December 2008), 531. by Shashi Pandit, Jeffrey Skolnick posted to fragment superposition by biehl on 2008-12-19 08:56:33 as along with 3 people sebk tny reyez
	Structure of membrane-bound α-synuclein from site-directed spin labeling and computational refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19666-19671. by Christine C. Jao, Balachandra G. Hegde, Jeannie Chen, Ian S. Haworth, Ralf Langen posted to spinlabel by biehl on 2008-12-17 07:45:33 as along with 2 people viktor21614 itmeson
	Dynamic equilibrium engagement of a polyvalent ligand with a single-site receptor [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17772-17777. by Tanja Mittag, Stephen Orlicky, Wing-Yiu Choy, et al.Xiaojing Tang, Hong Lin, Frank Sicheri, Lewis E. Kay, Mike Tyers, Julie D. Forman-Kay posted to no-tag by biehl on 2008-11-19 08:22:11 as
	Polar or Apolar—The Role of Polarity for Urea-Induced Protein Denaturation [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (14 November 2008), e1000221. by Martin C. Stumpe, Helmut Grubmüller posted to no-tag by biehl on 2008-11-16 12:41:10 as along with 3 people dsmueller pansapiens paulschlesinger
	STRING 8--a global view on proteins and their functional interactions in 630 organisms [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to no-tag by biehl on 2008-10-27 21:15:44 as along with 15 people and 1 group carlk mitko ilyashl hagechouchin443 lptolik kshameer allysonlister chad_davis larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit kgutwin Bioinformatics
	Faster exact Markovian probability functions for motif occurrences: a DFA-only approach. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 24. (15 December 2008), pp. 2839-2848. by P. Ribeca, E. Raineri posted to toread by biehl on 2008-10-21 19:07:34 as along with 1 person wowalz
	Theory, analysis, and interpretation of single-molecule force spectroscopy experiments [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 41. (14 October 2008), pp. 15755-15760. by Olga K. Dudko, Gerhard Hummer, Attila Szabo posted to toread by biehl on 2008-10-15 18:17:14 as along with 2 people devinli barry
	Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size [My Copy] Mol Syst Biol, Vol. 4 (2008) by Jingshan Zhang, Sergei Maslov, Eugene I. Shakhnovich posted to no-tag by biehl on 2008-08-26 15:03:56 as along with 7 people kiekyon TRHvidsten jjray akraemer grahamc Ema zwang
	Wiley InterScience :: Article :: HTML Full Text [My Copy] posted to toread_whenprinted by biehl on 2008-08-19 12:26:55 as
	Revisiting the Saccharomyces cerevisiae predicted ORFeome. [My Copy] Genome research, Vol. 18, No. 8. (23 August 2008), pp. 1294-1303. by Qian-Ru R. Li, Anne-Ruxandra R. Carvunis, Haiyuan Yu, et al.Jing-Dong D. Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J. Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E. Hill, Michael E. Cusick, Marc Vidal posted to yeast by biehl on 2008-07-11 13:20:52 as along with 6 people and 1 group biomcgary kiekyon dbensasson stajich nklee guhjy Mycology
	Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes [My Copy] Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1133-1142. by Nitin Gupta, Jamal Benhamida, Vipul Bhargava, et al.Daniel Goodman, Elisabeth Kain, Ian Kerman, Ngan Nguyen, Noah Ollikainen, Jesse Rodriguez, Jian Wang, Mary S. Lipton, Margaret Romine, Vineet Bafna, Richard D. Smith, Pavel A. Pevzner posted to proteomics by biehl on 2008-07-07 10:52:29 as along with 5 people and 1 group guhjy jessopher druvus stajich Neeperando Mycology
	A generative, probabilistic model of local protein structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 26. (1 July 2008), pp. 8932-8937. by Wouter Boomsma, Kanti V. Mardia, Charles C. Taylor, Jesper Ferkinghoff-Borg, Anders Krogh, Thomas Hamelryck posted to structure by biehl on 2008-07-02 09:23:54 as along with 5 people j3xucite bertelsen zwang apaydin mijam
	Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 25. (24 June 2008), pp. 8625-8630. by Øyvind Halskau, Raul Perez-Jimenez, Beatriz Ibarra-Molero, et al.Jarl Underhaug, Victor Muñoz, Aurora Martinez, Jose M. Sanchez-Ruiz posted to folding by biehl on 2008-06-26 11:19:20 as along with 2 people flbarroso min013
	Optimization in computational systems biology [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 47. by Julio Banga posted to toread_whenprinted by biehl on 2008-06-11 09:44:12 as along with 10 people druvus jvb svozil mazloom guhjy tmmurali reyez jrbanga balicea phoenixzxl
	Dead-Time Free Measurement of Dipole-Dipole Interactions between Electron Spins [My Copy] Journal of Magnetic Resonance, Vol. 142, No. 2. (February 2000), pp. 331-340. by M. Pannier, S. Veit, A. Godt, G. Jeschke, H. W. Spiess posted to nmr by biehl on 2008-05-28 10:25:34 as along with 2 people EvaKaltenborn viktor21614
	Development of a Physics-Based Force Field for the Scoring and Refinement of Protein Models [My Copy] Biophys. J. (4 January 2008), biophysj.107.121947. by Liliana Wroblewska, Anna Jagielska, Jeffrey Skolnick posted to forcefield by biehl on 2008-05-23 14:25:06 as along with 1 person paulschlesinger
	Ten-microsecond MD simulation of a fast-folding WW domain [My Copy] Biophys. J. (13 March 2008), biophysj.108.131565. by Peter L. Freddolino, Feng Liu, Martin H. Gruebele, Klaus Schulten posted to dynamics by biehl on 2008-05-23 13:41:40 as along with 7 people and 1 group r2s2 flbarroso doktornoe RamuAnandakrishnan paulschlesinger skoch3 samjlord Koch_Lab
	A new protein linear motif benchmark for multiple sequence alignment software. [My Copy] BMC bioinformatics, Vol. 9 (25 April 2008), 213. by Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie D. Thompson posted to testset by biehl on 2008-05-07 10:21:53 as along with 3 people chica niallhaslam chad_davis
	A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. [My Copy] BMC bioinformatics, Vol. 9 (06 May 2008), 229. by Claudia Chica, Alberto Labarga, Cathryn M. Gould, Rodrigo López, Toby J. Gibson posted to conservation by biehl on 2008-05-07 10:12:09 as along with 6 people chica niallhaslam chad_davis Evangelia cabbagesofdoom alanrw
	Bayesian estimates of free energies from nonequilibrium work data in the presence of instrument noise [My Copy] (1 Jul 2007) by Paul Maragakis, Felix Ritort, Carlos Bustamante, Martin Karplus, Gavin E. Crooks posted to toread_whenprinted by biehl on 2008-04-30 15:37:48 as
	Calculation of protein-ligand binding free energy by using a polarizable potential [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6290-6295. by Dian Jiao, Pavel A. Golubkov, Thomas A. Darden, Pengyu Ren posted to toread by biehl on 2008-04-29 18:41:31 as along with 5 people and 3 groups flbarroso onufriev jmccammon sobolevnrm barry baker-group structural_bioinformatics McCammon
	Cell water dynamics on multiple time scales [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6266-6271. by Erik Persson, Bertil Halle posted to dynamics toread by biehl on 2008-04-29 18:40:51 as along with 4 people and 1 group qshao edws ocs sobolevnrm baker-group
	PSAIA - Protein Structure and Interaction Analyzer [My Copy] BMC Structural Biology, Vol. 8 (09 April 2008), 21. by Josip Mihel, Mile Sikic, Sanja Tomic, Branko Jeren, Kristian Vlahovicek posted to for_anne by biehl on 2008-04-28 10:55:18 as
	MS-DOCK: Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Nicolas Sauton, David Lagorce, Bruno Villoutreix, Maria Miteva posted to docking by biehl on 2008-04-28 10:52:35 as along with 1 person neils
	Protein complexes and functional modules in molecular networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128. by Victor Spirin, Leonid A. Mirny posted to toread by biehl on 2008-04-23 23:35:28 as along with 15 people and 4 groups lawraga ycho0610 diamantis jiny camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou Evangelia grahamc ellakat carlk dbk-lab biophysics HIV_DR bioNetwork_sysBio
	Evolvability and hierarchy in rewired bacterial gene networks [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano posted to toread by biehl on 2008-04-22 22:48:10 as along with 26 people and 4 groups Asclepius yyfwuhan biomcgary megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid caseybrown Garamonfok austin hryk dbikard cactus margaritis chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction [My Copy] Proceedings of the National Academy of Sciences (17 April 2008), 0708708105. by Saul Lapidus, Bo Han, Jin Wang posted to toread by biehl on 2008-04-22 22:46:52 as along with 4 people jjray margaritis ddcttrl cactus
	Intrinsic Disorder and Functional Proteomics [My Copy] Biophysical Journal, Vol. 92, No. 5. (01 March 2007), pp. 1439-1456. by P. Radivojac, L. Iakoucheva, C. Oldfield, Z. Obradovic, V. Uversky, A. Dunker posted to disorder by biehl on 2008-04-17 12:24:17 as along with 4 people kiekyon jyamada1 cjeans allmensch
	Protein-protein interaction networks and biology--what's the connection? [My Copy] Nature biotechnology, Vol. 26, No. 1. (January 2008), pp. 69-72. by Luke Hakes, John W. Pinney, David L. Robertson, Simon C. Lovell posted to toread by biehl on 2008-04-17 11:51:42 as along with 19 people and 1 group ptrobajo colmryan lawraga flbarroso Yanno guhjy tmmurali jfr balicea dullhunk neils mikaelhuss cjeans nedwards shikin mclarenv Yumyai paolomarcatili zdai GeneGo
	The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog [My Copy] BMC Structural Biology, Vol. 8 (28 March 2008), 20. by Matthew J. Cuneo, Yaji Tian, Malin Allert, Homme W. Hellinga posted to mutation structure by biehl on 2008-04-09 09:01:39 as
	Comparison of protein interaction networks reveals species conservation and divergence [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (17 October 2006), 457. by Zhi Liang, Meng Xu, Maikun Teng, Liwen Niu posted to network penelope by biehl on 2008-04-07 16:48:38 as along with 7 people and 1 group thegoose saket thegoose2 tharris balajis cerca carlk C. elegans / WormBase
	From time series to complex networks: The visibility graph [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 4972-4975. by Lucas Lacasa, Bartolo Luque, Fernando Ballesteros, Jordi Luque, Juan C. NuÃ±o posted to network by biehl on 2008-04-02 11:12:02 as along with 5 people Borelli Diego_Prada ocs AbnerCYH vrich
	A multi-template combination algorithm for protein comparative modeling [My Copy] BMC Structural Biology, Vol. 8 (17 March 2008), 18. by Jianlin Cheng posted to homology by biehl on 2008-03-26 09:40:25 as along with 1 person newton1234
	Hybrid optimization method with general switching strategy for parameter estimation [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Eva B. Canto, Martin Peifer, Julio Banga, Jens Timmer, Christian Fleck posted to no-tag by biehl on 2008-03-26 09:36:44 as along with 2 people xili03 pmendes
	Consistent blind protein structure generation from NMR chemical shift data [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4685-4690. by Yang Shen, Oliver Lange, Frank Delaglio, et al.Paolo Rossi, James M. Aramini, Gaohua Liu, Alexander Eletsky, Yibing Wu, Kiran K. Singarapu, Alexander Lemak, Alexandr Ignatchenko, Cheryl H. Arrowsmith, Thomas Szyperski, Gaetano T. Montelione, David Baker, Ad Bax posted to no-tag by biehl on 2008-03-25 18:28:15 as along with 7 people and 1 group siggi84 babakap dgront zwang sunhwan skoddet apaydin Nielsen group
	Gambling for global goods [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2261-2262. by Anna Dreber, Martin A. Nowak posted to toread by biehl on 2008-02-19 22:31:24 as
	The Evolutionary and Developmental Foundations of Mathematics [My Copy] PLoS Biology, Vol. 6, No. 2. (1 February 2008), e19. by Michael J. Beran posted to toread by biehl on 2008-02-08 10:01:24 as along with 4 people almadana madhadron djkt psique
	Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain. [My Copy] PLoS Comput Biol, Vol. 2, No. 1. (January 2006) by T. Hou, K. Chen, W. A. McLaughlin, B. Lu, W. Wang posted to dynamics penelope sh3 by biehl on 2008-02-07 15:01:55 as along with 4 people neils carlescorbi Evangelia jteyra
	SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family [My Copy] Journal of Molecular Biology, Vol. 298, No. 2. (28 April 2000), pp. 313-328. by Barbara Brannetti, Allegra Via, Gianluca Cestra, Gianni Cesareni, Manuela H. Citterich posted to penelope sh3 by biehl on 2008-01-31 14:23:27 as along with 2 people carlescorbi Evangelia
	Protein Interaction Networks by Proteome Peptide Scanning [My Copy] PLoS Biology, Vol. 2, No. 1. (1 January 2004), e14. by Christiane Landgraf, Simona Panni, Luisa Montecchi-Palazzi, et al.Luisa Castagnoli, Jens Schneider-Mergener, Rudolf Volkmer-Engert, Gianni Cesareni posted to penelope sh3 by biehl on 2008-01-31 14:19:41 as along with 3 people eukfn Evangelia hplatero
	In Vitro Evolution of Recognition Specificity Mediated by SH3 Domains Reveals Target Recognition Rules [My Copy] J. Biol. Chem., Vol. 277, No. 24. (7 June 2002), pp. 21666-21674. by Simona Panni, Luciana Dente, Gianni Cesareni posted to penelope sh3 by biehl on 2008-01-31 14:19:06 as along with 1 person matzke
	Can we infer peptide recognition specificity mediated by SH3 domains? [My Copy] FEBS Letters In Protein Domains, Vol. 513, No. 1. (20 February 2002), pp. 38-44. by Gianni Cesareni, Simona Panni, Giuliano Nardelli, Luisa Castagnoli posted to penelope sh3 by biehl on 2008-01-31 14:16:02 as along with 1 person Evangelia

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toread	15
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