bioguru2000's library 47 articles Export

	Using expression arrays for copy number detection: an example from E. coli [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (14 June 2007), 203. by Dmitriy Skvortsov, Diana Abdueva, Michael Stitzer, Steven Finkel, Simon Tavare posted to copynumberexpression by bioguru2000 on 2007-06-19 14:00:06 as along with 3 people and 2 groups natstreet ealloza shigepong Bioinformatics BioinfoCIPF
	Coupled analysis of gene expression and chromosomal location. [My Copy] Genomics, Vol. 85, No. 3. (March 2005), pp. 401-412. by Y. Yi, J. Mirosevich, Y. Shyr, R. Matusik, A. L. George posted to copynumberexpression by bioguru2000 on 2007-06-19 01:39:12 as along with 1 person vmsr
	Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics. [My Copy] Proc Natl Acad Sci U S A, Vol. 98, No. 3. (30 January 2001), pp. 1124-1129. by K. Virtaneva, F. A. Wright, S. M. Tanner, et al.B. Yuan, W. J. Lemon, M. A. Caligiuri, C. D. Bloomfield, A. de La Chapelle , R. Krahe posted to copynumberexpression by bioguru2000 on 2007-06-19 01:37:25 as along with 1 person and 1 group ealloza BioinfoCIPF
	Relationship of Gene Expression and Chromosomal Abnormalities in Colorectal Cancer [My Copy] Cancer Res, Vol. 66, No. 4. (15 February 2006), pp. 2129-2137. by Dafna Tsafrir, Manny Bacolod, Zachariah Selvanayagam, et al.Ilan Tsafrir, Jinru Shia, Zhaoshi Zeng, Hao Liu, Curtis Krier, Robert F. Stengel, Francis Barany, William L. Gerald, Philip B. Paty, Eytan Domany, Daniel A. Notterman posted to copynumberexpression by bioguru2000 on 2007-06-19 01:35:02 as along with 2 people jfr cpnP
	Genomic gains and losses influence expression levels of genes located within the affected regions: a study on acute myeloid leukemias with trisomy 8, 11, or 13, monosomy 7, or deletion 5q [My Copy] Leukemia, Vol. aop, No. current. by C. Schoch, A. Kohlmann, M. Dugas, et al.W. Kern, W. Hiddemann, S. Schnittger, T. Haferlach, T. Haferlach posted to copynumberexpression by bioguru2000 on 2007-06-19 01:33:58 as
	Widespread aneuploidy revealed by DNA microarray expression profiling. [My Copy] Nat Genet, Vol. 25, No. 3. (July 2000), pp. 333-337. by T. R. Hughes, C. J. Roberts, H. Dai, et al.A. R. Jones, M. R. Meyer, D. Slade, J. Burchard, S. Dow, T. R. Ward, M. J. Kidd, S. H. Friend, M. J. Marton posted to copynumberexpression by bioguru2000 on 2007-06-19 01:28:14 as
	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer research, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by Janice M. Nigro, Anjan Misra, Li Zhang, et al.Ivan Smirnov, Howard Colman, Chandi Griffin, Natalie Ozburn, Mingang Chen, Edward Pan, Dimpy Koul, Alfred K. Yung, Burt G. Feuerstein, Kenneth D. Aldape posted to copynumberexpression by bioguru2000 on 2007-06-19 01:23:25 as along with 4 people aezrin srp33 chrisamiller jfr
	Identification of frequent cytogenetic aberrations in hepatocellular carcinoma using gene-expression microarray data [My Copy] Genome Biology, Vol. 3, No. 12. (2002), pp. research0075.1-research0075.8. by Joseph Crawley, Kyle Furge posted to copynumberexpression by bioguru2000 on 2007-06-19 00:54:55 as
	Statistical methods for detecting genomic alterations through array-based comparative genomic hybridization (CGH). [My Copy] Front Biosci, Vol. 9 (1 January 2004), pp. 540-549. by Y. Wang, S. W. Guo posted to copynumbervariation methods by bioguru2000 on 2006-11-24 15:37:58 as
	M-CGH: analysing microarray-based CGH experiments. [My Copy] BMC Bioinformatics, Vol. 5 (9 June 2004) by J. Wang, L. A. Meza-Zepeda, S. H. Kresse, O. Myklebost posted to copynumbervariation by bioguru2000 on 2006-11-24 15:33:50 as along with 1 person noushin
	Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel. [My Copy] Mol Cancer Ther, Vol. 5, No. 4. (April 2006), pp. 853-867. by K. J. Bussey, K. Chin, S. Lababidi, et al.M. Reimers, W. C. Reinhold, W. L. Kuo, F. Gwadry, Ajay, H. Kouros-Mehr, J. Fridlyand, A. Jain, C. Collins, S. Nishizuka, G. Tonon, A. Roschke, K. Gehlhaus, I. Kirsch, D. A. Scudiero, J. W. Gray, J. N. Weinstein posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-24 15:30:53 as along with 2 people jfr rdiaz
	Hidden Markov models approach to the analysis of array CGH data [My Copy] Journal of Multivariate Analysis, Vol. 90, No. 1. (July 2004), pp. 132-153. by Jane Fridlyand, Antoine M. Snijders, Dan Pinkel, Donna G. Albertson, Ajay N. Jain posted to copynumbervariation methods by bioguru2000 on 2006-11-24 15:28:07 as along with 1 person oilcan
	Breakpoint identification and smoothing of array comparative genomic hybridization data. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3636-3637. by K. Jong, E. Marchiori, G. Meijer, A. V. Vaart, B. Ylstra posted to copynumbervariation methods by bioguru2000 on 2006-11-24 15:19:43 as along with 1 person OscarRueda
	Analysis of genomic DNA alterations and mRNA expression patterns in a panel of human pancreatic cancer cell lines. [My Copy] Genes Chromosomes Cancer, Vol. 44, No. 1. (September 2005), pp. 37-51. by S. Gysin, P. Rickert, K. Kastury, M. McMahon posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-19 20:37:56 as along with 1 person rdiaz
	Gene expression analysis of chromosomal regions with gain or loss of genetic material detected by comparative genomic hybridization. [My Copy] Genes Chromosomes Cancer, Vol. 41, No. 4. (December 2004), pp. 353-365. by B. Meléndez, R. Díaz-Uriarte, M. Cuadros, et al.A. Martínez-Ramírez, J. Fernández-Piqueras, A. Dopazo, J. C. Cigudosa, C. Rivas, J. Dopazo, B. Martínez-Delgado, J. Benítez posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-19 20:31:33 as
	Array-based comparative genomic hybridization for the genomewide detection of submicroscopic chromosomal abnormalities. [My Copy] Am J Hum Genet, Vol. 73, No. 6. (December 2003), pp. 1261-1270. by L. E. Vissers, B. B. de Vries, K. Osoegawa, et al.I. M. Janssen, T. Feuth, C. O. Choy, H. Straatman, W. van der Vliet, E. H. Huys, A. van Rijk, D. Smeets, C. M. van Ravenswaaij-Arts, N. V. Knoers, I. van der Burgt, P. J. de Jong, H. G. Brunner, A. G. van Kessel, E. F. Schoenmakers, J. A. Veltman posted to copynumbervariation methods by bioguru2000 on 2006-11-19 20:22:06 as
	High-resolution Global Genomic Survey of 178 Gliomas Reveals Novel Regions of Copy Number Alteration and Allelic Imbalances. [My Copy] Cancer Res, Vol. 66, No. 19. (1 October 2006), pp. 9428-9436. by Y. Kotliarov, M. E. Steed, N. Christopher, et al.J. Walling, Q. Su, A. Center, J. Heiss, M. Rosenblum, T. Mikkelsen, J. C. Zenklusen, H. A. Fine posted to datasetdescription by bioguru2000 on 2006-11-07 03:40:51 as along with 2 people burak frohike
	Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications [My Copy] Oncogene, Vol. aop, No. current. (31 January 2005) by Markus Heidenblad, David Lindgren, Joris A. Veltman, et al.Tord Jonson, Eija H. Mahlamaki, Ludmila Gorunova, Ad G. v. van Kessel, Eric F. P. M. Schoenmakers, Mattias Hoglund posted to copynumberexpression copynumbervartiation by bioguru2000 on 2006-11-07 03:38:33 as
	Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 20. (1 October 2002), pp. 12963-12968. by Jonathan R. Pollack, Therese Sørlie, Charles M. Perou, et al.Christian A. Rees, Stefanie S. Jeffrey, Per E. Lonning, Robert Tibshirani, David Botstein, Anne-Lise L. Børresen-Dale, Patrick O. Brown posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-07 03:32:57 as along with 3 people shikin frohike rdiaz
	Impact of DNA amplification on gene expression patterns in breast cancer. [My Copy] Cancer Res, Vol. 62, No. 21. (1 November 2002), pp. 6240-6245. by E. Hyman, P. Kauraniemi, S. Hautaniemi, et al.M. Wolf, S. Mousses, E. Rozenblum, M. Ringnér, G. Sauter, O. Monni, A. Elkahloun, O. P. Kallioniemi, A. Kallioniemi posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-07 03:31:55 as along with 2 people ronglais jfr
	Genetic aberrations in prostate cancer by microarray analysis. [My Copy] Int J Cancer, Vol. 119, No. 6. (15 September 2006), pp. 1322-1329. by O. R. Saramäki, K. P. Porkka, R. L. Vessella, T. Visakorpi posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-07 03:26:59 as along with 1 person holmesjo
	High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on cDNA microarrays: impact of copy number on gene expression. [My Copy] Neoplasia, Vol. 6, No. 3. (n 2004), pp. 240-247. by M. Wolf, S. Mousses, S. Hautaniemi, et al.R. Karhu, P. Huusko, M. Allinen, A. Elkahloun, O. Monni, Y. Chen, A. Kallioniemi, O. P. Kallioniemi posted to copynumberexpression copynumbervariation by bioguru2000 on 2006-11-07 03:24:43 as along with 1 person xingxu
	A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. [My Copy] Cancer Res, Vol. 65, No. 14. (15 July 2005), pp. 6071-6079. by Y. Nannya, M. Sanada, K. Nakazaki, et al.N. Hosoya, L. Wang, A. Hangaishi, M. Kurokawa, S. Chiba, D. K. Bailey, G. C. Kennedy, S. Ogawa posted to copynumbervariation methods by bioguru2000 on 2006-11-04 18:15:27 as along with 5 people noushin jfr rdiaz cpnP debasis
	CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by J. Huang, W. Wei, J. Chen, et al.J. Zhang, G. Liu, X. Di, R. Mei, S. Ishikawa, H. Aburatani, K. W. Jones, M. H. Shapero posted to copynumbervariation methods by bioguru2000 on 2006-11-04 18:12:25 as along with 2 people and 1 group jfr rdiaz Bioinformatics
	Visualization-based discovery and analysis of genomic aberrations in microarray data. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by C. L. Myers, X. Chen, O. G. Troyanskaya posted to copynumbervariation methods by bioguru2000 on 2006-11-04 18:09:45 as along with 2 people srp33 natstreet
	Accurate detection of aneuploidies in array CGH and gene expression microarray data. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3533-3543. by C. L. Myers, M. J. Dunham, S. Y. Kung, O. G. Troyanskaya posted to copynumbervariation methods by bioguru2000 on 2006-11-04 18:08:30 as along with 2 people OscarRueda capitall
	A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data. [My Copy] Comput Biol Chem, Vol. 29, No. 1. (February 2005), pp. 47-54. by Y. Lai, H. Zhao posted to copynumbervariation methods by bioguru2000 on 2006-11-04 18:04:57 as along with 1 person rdiaz
	Whole genome DNA copy number changes identified by high density oligonucleotide arrays. [My Copy] Hum Genomics, Vol. 1, No. 4. (May 2004), pp. 287-299. by J. Huang, W. Wei, J. Zhang, et al.G. Liu, G. R. Bignell, M. R. Stratton, P. A. Futreal, R. Wooster, K. W. Jones, M. H. Shapero posted to copynumbervariation by bioguru2000 on 2006-11-04 18:01:16 as along with 4 people pcahan1 rdiaz ma_ko holmesjo
	High-resolution analysis of DNA copy number using oligonucleotide microarrays. [My Copy] Genome Res, Vol. 14, No. 2. (February 2004), pp. 287-295. by G. R. Bignell, J. Huang, J. Greshock, et al.S. Watt, A. Butler, S. West, M. Grigorova, K. W. Jones, W. Wei, M. R. Stratton, P. A. Futreal, B. Weber, M. H. Shapero, R. Wooster posted to copynumbervariation by bioguru2000 on 2006-11-04 17:58:49 as along with 1 person jfr
	Application of ROMA (representational oligonucleotide microarray analysis) to patients with cytogenetic rearrangements. [My Copy] Genet Med, Vol. 7, No. 2. (February 2005), pp. 111-118. by V. Jobanputra, J. Sebat, J. Troge, et al.W. Chung, K. Anyane-Yeboa, M. Wigler, D. Warburton posted to no-tag by bioguru2000 on 2006-11-04 17:55:52 as
	Circular binary segmentation for the analysis of array-based DNA copy number data. [My Copy] Biostatistics, Vol. 5, No. 4. (October 2004), pp. 557-572. by A. B. Olshen, E. S. Venkatraman, R. Lucito, M. Wigler posted to copynumbervariation methods by bioguru2000 on 2006-11-04 16:58:29 as along with 4 people pcahan1 OscarRueda jackjackjjj shigepong
	A versatile statistical analysis algorithm to detect genome copy number variation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 46. (16 November 2004), pp. 16292-16297. by R. S. Daruwala, A. Rudra, H. Ostrer, R. Lucito, M. Wigler, B. Mishra posted to copynumbervariation methods by bioguru2000 on 2006-11-04 16:56:47 as along with 2 people and 1 group rdiaz OscarRueda Bioinformatics
	Mouse genomic representational oligonucleotide microarray analysis: detection of copy number variations in normal and tumor specimens. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 30. (25 July 2006), pp. 11234-11239. by B. Lakshmi, I. M. Hall, C. Egan, et al.J. Alexander, A. Leotta, J. Healy, L. Zender, M. S. Spector, W. Xue, S. W. Lowe, M. Wigler, R. Lucito posted to copynumbervariation mouse by bioguru2000 on 2006-11-04 16:53:41 as along with 1 group Bioinformatics
	Recent segmental duplications in the human genome. [My Copy] Science, Vol. 297, No. 5583. (9 August 2002), pp. 1003-1007. by J. A. Bailey, Z. Gu, R. A. Clark, et al.K. Reinert, R. V. Samonte, S. Schwartz, M. D. Adams, E. W. Myers, P. W. Li, E. E. Eichler posted to segmental_duplications by bioguru2000 on 2006-11-04 16:45:37 as along with 5 people dakelley APRegier daed pcahan1 balicea
	Complex SNP-related sequence variation in segmental genome duplications [My Copy] Nat Genet, Vol. 36, No. 8. (2004), pp. 861-866. by David Fredman, Stefan J. White, Susanna Potter, Evan E. Eichler, Johan T. Dunnen, Anthony J. Brookes posted to segmental_duplications by bioguru2000 on 2006-11-04 16:40:30 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Copy number variation: New insights in genome diversity [My Copy] Genome Research, Vol. 16, No. 8. (1 August 2006), pp. 949-961. by Jennifer L. Freeman, George H. Perry, Lars Feuk, et al.Richard Redon, Steven A. Mccarroll, David M. Altshuler, Hiroyuki Aburatani, Keith W. Jones, Chris Tyler-Smith, Matthew E. Hurles, Nigel P. Carter, Stephen W. Scherer, Charles Lee posted to copynumbervariation by bioguru2000 on 2006-10-31 02:56:07 as along with 10 people and 3 groups bertelsen brianb noushin bpb balicea dchughes jri djkt debasis jasonflannick Bioinformatics G4ID Genetics-of-Gambling
	Genomic segmental polymorphisms in inbred mouse strains. [My Copy] Nat Genet, Vol. 36, No. 9. (September 2004), pp. 952-954. by J. Li, T. Jiang, J. H. Mao, et al.A. Balmain, L. Peterson, C. Harris, P. H. Rao, P. Havlak, R. Gibbs, W. W. Cai posted to copynumbervariation mouse by bioguru2000 on 2006-10-31 02:07:26 as along with 1 person pcahan1
	As normal as normal can be? - Nature Genetics [My Copy] Nature Genetics, Vol. 36, No. 9. (September 2004), pp. 931-932. by Nigel P. Carter posted to no-tag by bioguru2000 on 2006-10-31 02:04:09 as
	Frequency of new copy number variation in humans - Nature Genetics [My Copy] Nature Genetics, Vol. 37, No. 4. (April 2005), pp. 333-334. by Gert-Jan B. van Ommen posted to copynumbervariation by bioguru2000 on 2006-10-31 02:01:04 as
	STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments [My Copy] Genome Research, Vol. 16, No. 9. (September 2006), pp. 1149-1158. by S. J. Diskin, T. Eck, J. Greshock, et al.Y. P. Mosse, T. Naylor, Stoeckert, B. L. Weber, J. M. Maris, G. R. Grant posted to copynumbervariation methods by bioguru2000 on 2006-10-23 14:38:14 as
	Prediction of chromosomal aneuploidy from gene expression data [My Copy] Genes, Chromosomes and Cancer, Vol. 9999, No. 9999. (2006), NA. by Libi Hertzberg, David R. Betts, Susana C. Raimondi, et al.Beat W. Schäfer, Daniel A. Notterman, Eytan Domany, Shai Izraeli posted to copynumberexpression by bioguru2000 on 2006-10-22 22:23:58 as along with 2 people GM_CVK jfr
	Copy-number polymorphisms: mining the tip of an iceberg. [My Copy] Trends Genet, Vol. 21, No. 6. (June 2005), pp. 315-317. by P. G. Buckley, K. K. Mantripragada, A. Piotrowski, T. Diaz de Ståhl, J. P. Dumanski posted to copynumbervariation review by bioguru2000 on 2006-10-22 18:15:03 as along with 1 person and 1 group pcahan1 Bioinformatics
	Representational Oligonucleotide Microarray Analysis: A High-Resolution Method to Detect Genome Copy Number Variation [My Copy] Genome Research, Vol. 13, No. 10. (October 2003), pp. 2291-2305. by Robert Lucito, John Healy, Joan Alexander, et al.Andrew Reiner, Diane Esposito, Maoyen Chi, Linda Rodgers, Amy Brady, Jonathan Sebat, Jennifer Troge, Joseph A. West, Seth Rostan, Ken C. Q. Nguyen, Scott Powers, Kenneth Q. Ye, Adam Olshen, Ennapadam Venkatraman, Larry Norton, Michael Wigler posted to copynumbervariation by bioguru2000 on 2006-10-22 18:11:33 as along with 5 people Annab stharward oilcan rdiaz joule
	Large-Scale Copy Number Polymorphism in the Human Genome [My Copy] Science, Vol. 305, No. 5683. (July 2004), pp. 525-528. by J. Sebat, B. Lakshmi, J. Troge, et al.J. Alexander, J. Young, P. Lundin, S. Månér, H. Massa, M. Walker, M. Chi, N. Navin, R. Lucito, J. Healy, J. Hicks, K. Ye, A. Reiner, T. C. Gilliam, B. Trask, N. Patterson, A. Zetterberg, M. Wigler1 posted to copynumbervariation by bioguru2000 on 2006-10-22 18:02:04 as
	Segmental Duplications and Copy-Number Variation in the Human Genome [My Copy] American Journal of Human Genetics, Vol. 77, No. 1. (July 2005), pp. 78-88. by A. J. Sharp, D. P. Locke, S. D. Mcgrath, et al.Z. Cheng, J. A. Bailey, R. U. Vallente, L. M. Pertz, R. A. Clark, S. Schwartz, R. Segraves, V. V. Oseroff, D. G. Albertson, D. Pinkel, E. E. Eichler posted to copynumbervariation by bioguru2000 on 2006-10-22 17:48:34 as
	Detection of large-scale variation in the human genome. [My Copy] Nature genetics, Vol. 36, No. 9. (September 2004), pp. 949-951. by A. John Iafrate, Lars Feuk, Miguel N. Rivera, et al.Marc L. Listewnik, Patricia K. Donahoe, Ying Qi, Stephen W. Scherer, Charles Lee posted to copynumbervariation by bioguru2000 on 2006-10-22 17:06:17 as along with 7 people and 2 groups daforerog psique daed pcahan1 dchughes ealloza Ema G4ID Genetics-of-Gambling
	Complex patterns of copy number variation at sites of segmental duplications: an important category of structural variation in the human genome. [My Copy] Hum Genet, Vol. 120, No. 2. (September 2006), pp. 270-284. by V. Goidts, D. N. Cooper, L. Armengol, et al.W. Schempp, J. Conroy, X. Estivill, N. Nowak, H. Hameister, H. Kehrer-Sawatzki posted to copynumbervariation by bioguru2000 on 2006-10-22 16:49:23 as along with 3 people and 5 groups Archaeogenetics dchughes breden Bioinformatics FAB-lab G4ID SFUAntibodyResearch Genetics-of-Gambling