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blobbybirdman's analysismethods [8 articles]

Recent papers added to blobbybirdman's library classified by the tag analysismethods. You can also see everyone's analysismethods.
  • REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3487-90.
    by C Roven, HJ Bussemaker
  • MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data
    Nucleic Acids Res, Vol. 23, No. 23. (1995), pp. 4878-84.
    by K Quandt, K Frech, H Karas, E Wingender, T Werner
  • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    Nat Biotechnol, Vol. 20, No. 8. (2002), pp. 835-9.
    by XS Liu, DL Brutlag, JS Liu
  • Identification of regulatory elements using a feature selection method
    Bioinformatics, Vol. 18, No. 9. (2002), pp. 1167-75.
  • Subtle motifs: defining the limits of motif finding algorithms
    Bioinformatics, Vol. 18, No. 10. (2002), pp. 1382-90.
    by U Keich, PA Pevzner
  • What is a hidden Markov model?
    Nat Biotechnol, Vol. 22, No. 10. (2004), pp. 1315-6.
    by SR Eddy
  • Inference from clustering with application to gene-expression microarrays
    J Comput Biol, Vol. 9, No. 1. (2002), pp. 105-26.
    by ER Dougherty, J Barrera, M Brun, S Kim, RM Cesar, Y Chen, M Bittner, JM Trent
  • ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
    Genomics, Vol. 83, No. 3. (2004), pp. 349-60.
    by MJ Buck, JD Lieb
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