bmduggan's library 283 articles Export

	High-resolution structure of Ascaris trypsin inhibitor in solution: direct evidence for a pH-induced conformational transition in the reactive site. [My Copy] Structure, Vol. 2, No. 7. (15 July 1994), pp. 669-678. by B. L. Grasberger, G. M. Clore, A. M. Gronenborn posted to solution-structure nmr inhibitor disulfide by bmduggan on 2009-11-07 05:33:13 as
	The molecular structure of the complex of Ascaris chymotrypsin/elastase inhibitor with porcine elastase. [My Copy] Structure, Vol. 2, No. 7. (15 July 1994), pp. 679-689. by K. Huang, N. C. Strynadka, V. D. Bernard, R. J. Peanasky, M. N. James posted to inhibitor disulfide crystal-structure by bmduggan on 2009-11-07 05:32:21 as
	NMR solution structure of Apis mellifera chymotrypsin/cathepsin G inhibitor-1 (AMCI-1): structural similarity with Ascaris protease inhibitors. [My Copy] Protein Science, Vol. 9, No. 5. (May 2000), pp. 976-984. by T. Cierpicki, J. Bania, J. Otlewski posted to solution-structure nmr inhibitor disulfide by bmduggan on 2009-11-07 05:30:41 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Solution structure of BSTI: a new trypsin inhibitor from skin secretions of Bombina bombina. [My Copy] Biochemistry, Vol. 40, No. 15. (17 April 2001), pp. 4601-4609. by K. J. Rosengren, N. L. Daly, M. J. Scanlon, D. J. Craik posted to solution-structure nmr inhibitor disulfide by bmduggan on 2009-11-07 05:29:12 as
	Targeted molecular dynamics: a new approach for searching pathways of conformational transitions. [My Copy] Journal of molecular graphics, Vol. 12, No. 2. (June 1994), pp. 84-89. by J. Schlitter, M. Engels, P. Krüger posted to targeted molecular-dynamics by bmduggan on 2009-11-07 03:54:58 as
	Solution NMR Spin Relaxation Methods for Characterizing Chemical Exchange in High-Molecular-Weight Systems [My Copy] Methods in Enzymology, Vol. 394 (2005), pp. 430-465. by A. Palmer, M. Grey, C. Wang posted to relaxation pulse-sequence nmr by bmduggan on 2009-11-07 03:49:15 as along with 1 person rph
	A meta-analysis and systematic review of the efficacy and safety of anticoagulants as cancer treatment: impact on survival and bleeding complications. [My Copy] Cancer, Vol. 110, No. 5. (1 September 2007), pp. 1149-1161. by Nicole M. Kuderer, Alok A. Khorana, Gary H. Lyman, Charles W. Francis posted to thrombosis cancer by bmduggan on 2009-11-06 22:09:33 as
	Platelets and fibrin(ogen) increase metastatic potential by impeding natural killer cell-mediated elimination of tumor cells. [My Copy] Blood, Vol. 105, No. 1. (1 January 2005), pp. 178-185. by Joseph S. Palumbo, Kathryn E. Talmage, Jessica V. Massari, et al.Christine M. La Jeunesse, Matthew J. Flick, Keith W. Kombrinck, Markéta Jirousková, Jay L. Degen posted to cancer by bmduggan on 2009-11-06 22:08:05 as
	Genetic link between cancer and thrombosis. [My Copy] Journal of Clinical Oncology, Vol. 27, No. 29. (10 October 2009), pp. 4827-4833. by Carla Boccaccio, Paolo M. Comoglio posted to tissuefactor thrombosis review cancer by bmduggan on 2009-11-06 21:21:15 as
	Protein dynamics measurements by TROSY-based NMR experiments. [My Copy] Journal of Magnetic Resonance, Vol. 143, No. 2. (April 2000), pp. 423-426. by G. Zhu, Y. Xia, L. K. Nicholson, K. H. Sze posted to trosy relaxation pulse-sequence nmr by bmduggan on 2009-11-06 21:10:16 as along with 1 person rph
	Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 23. (11 November 1997), pp. 12366-12371. by K. Pervushin, R. Riek, G. Wider, K. Wüthrich posted to trosy pulse-sequence nmr by bmduggan on 2009-11-06 21:08:53 as along with 5 people aip cychen_cite carterb rph kumar_physics
	Rotamer libraries in the 21st century. [My Copy] Current opinion in structural biology, Vol. 12, No. 4. (August 2002), pp. 431-440. by Roland L. Dunbrack posted to rotamers by bmduggan on 2009-11-06 19:42:42 as along with 9 people and 1 group yongzhao dgront blackbart kazemi rsantana medic0747 LamBras mijam jwm TSRI_MGL
	Coagulation factor IXa: the relaxed conformation of Tyr99 blocks substrate binding. [My Copy] Structure, Vol. 7, No. 8. (15 August 1999), pp. 989-996. by K. P. Hopfner, A. Lang, A. Karcher, et al.K. Sichler, E. Kopetzki, H. Brandstetter, R. Huber, W. Bode, R. A. Engh posted to factorix crystal-structure by bmduggan on 2009-11-06 19:26:59 as
	Formation of tissue factor-factor VIIa-factor Xa complex prevents apoptosis in human breast cancer cells. [My Copy] Thrombosis and haemostasis, Vol. 96, No. 2. (August 2006), pp. 196-201. by Xiaofeng Jiang, Yan Lin L. Guo, Michael E. Bromberg posted to tissuefactor factorvii cancer breast apoptosis by bmduggan on 2009-11-05 18:26:01 as
	Transcriptional program induced by factor VIIa-tissue factor, PAR1 and PAR2 in MDA-MB-231 cells. [My Copy] Journal of Thrombosis and Haemostasis, Vol. 5, No. 8. (August 2007), pp. 1588-1597. by T. Albrektsen, B. B. Sørensen, G. M. Hjortø, J. Fleckner, L. V. Rao, L. C. Petersen posted to tissuefactor factorvii cancer breast by bmduggan on 2009-11-05 18:23:39 as
	Thromboembolism is a leading cause of death in cancer patients receiving outpatient chemotherapy [My Copy] Journal of Thrombosis and Haemostasis, Vol. 5, No. 3. (March 2007), pp. 632-634. by A. A. Khorana, C. W. Francis, E. Culakova, N. M. Kuderer, G. H. Lyman posted to thrombosis cancer by bmduggan on 2009-11-05 18:17:49 as
	Allosteric Regulation of the Cofactor-Dependent Serine Protease Coagulation Factor VIIa [My Copy] Trends in Cardiovascular Medicine, Vol. 8, No. 8. (November 1998), pp. 350-356. by Wolfram Ruf, Craig D. Dickinson posted to tissuefactor review factorvii allostery by bmduggan on 2009-11-04 20:44:44 as
	Tissue factor: a mini-review [My Copy] Journal of Tissue Engineering and Regenerative Medicine, Vol. 1, No. 3. (2007), pp. 161-169. by Valéry Daubie, Roland Pochet, Sophie Houard, Pierre Philippart posted to tissuefactor review by bmduggan on 2009-11-04 20:43:25 as
	Recombinant soluble human tissue factor secreted by Saccharomyces cerevisiae and refolded from Escherichia coli inclusion bodies: glycosylation of mutants, activity and physical characterization. [My Copy] The Biochemical journal, Vol. 310 ( Pt 2) (1 September 1995), pp. 605-614. by M. J. Stone, W. Ruf, D. J. Miles, T. S. Edgington, P. E. Wright posted to tissuefactor inclusion-bodies expression disulfide by bmduggan on 2009-11-04 20:41:55 as along with 1 person iskathy
	Inhibitors of Factor VIIa/Tissue Factor [My Copy] Arteriosclerosis, Thrombosis, and Vascular Biology, Vol. 27, No. 9. (1 September 2007), pp. 1895-1900. by Rebecca A. Shirk, George P. Vlasuk posted to tissuefactor review inhibitor factorvii by bmduggan on 2009-11-04 20:31:08 as
	Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results [My Copy] Journal of the American Chemical Society, Vol. 104, No. 17. (1 August 1982), pp. 4559-4570. by Giovanni Lipari, Attila Szabo posted to relaxation nmr model-free-approach by bmduggan on 2009-11-02 19:37:45 as
	Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity [My Copy] Journal of the American Chemical Society, Vol. 104, No. 17. (1 August 1982), pp. 4546-4559. by Giovanni Lipari, Attila Szabo posted to relaxation nmr model-free-approach by bmduggan on 2009-11-02 19:30:45 as along with 1 person rpetrenko
	Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme. [My Copy] Journal of Molecular Biology, Vol. 246, No. 1. (10 February 1995), pp. 144-163. by A. M. Mandel, M. Akke, A. G. Palmer posted to relaxation protein_dynamics nmr model-free-approach by bmduggan on 2009-11-02 17:25:31 as
	Protein dynamics from NMR [My Copy] Nat Struct Mol Biol, Vol. 5 Suppl (01 July 1998), pp. 513-517. by Lewis E. Kay posted to review relaxation protein_dynamics nmr by bmduggan on 2009-11-02 15:23:02 as along with 2 people apaydin ruvido
	Tissue Factor/Factor VIIa Inhibitors Block Angiogenesis and Tumor Growth Through a Nonhemostatic Mechanism [My Copy] Cancer Research, Vol. 63, No. 11. (1 June 2003), pp. 2997-3000. by Todd A. Hembrough, Glenn M. Swartz, Adonia Papathanassiu, et al.George P. Vlasuk, William E. Rote, Shawn J. Green, Victor S. Pribluda posted to tissuefactor napc2 nap5 cancer by bmduggan on 2009-10-29 11:58:00 as
	Computational design of affinity and specificity at protein–protein interfaces [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (29 August 2009), pp. 458-463. by John Karanicolas, Brian Kuhlman posted to rosetta review molecular-dynamics interactions design by bmduggan on 2009-10-28 15:28:08 as along with 4 people sobolevnrm VGreiff higueruelo barry
	Malignancies, Prothrombotic Mutations, and the Risk of Venous Thrombosis [My Copy] Journal of the American Medical Association, Vol. 293, No. 6. (9 February 2005), pp. 715-722. by Jeanet W. Blom, Carine J. M. Doggen, Susanne Osanto, Frits R. Rosendaal posted to thrombosis cancer by bmduggan on 2009-10-27 14:42:56 as along with 1 person PaulaBO
	Role of Tissue Factor in Cancer [My Copy] J Clin Oncol, Vol. 27, No. 29. (10 October 2009), pp. 4834-4838. by Raj S. Kasthuri, Mark B. Taubman, Nigel Mackman posted to tissuefactor review cancer by bmduggan on 2009-10-26 20:15:21 as
	Inhibition of tissue factor signaling suppresses tumor growth [My Copy] Blood, Vol. 111, No. 1. (1 January 2008), pp. 190-199. by Henri H. Versteeg, Florence Schaffner, Marjolein Kerver, et al.Helle H. Petersen, Jasimuddin Ahamed, Brunhilde Felding-Habermann, Yoshikazu Takada, Barbara M. Mueller, Wolfram Ruf posted to tissuefactor cancer by bmduggan on 2009-10-26 20:09:41 as
	Thrombin generation and the pathogenesis of cancer. [My Copy] Seminars in thrombosis and hemostasis, Vol. 32 Suppl 1 (April 2006), pp. 61-68. by Wolfram Ruf, Barbara M. Mueller posted to tissuefactor thrombin review cancer by bmduggan on 2009-10-26 17:51:53 as
	Design of selective phenylglycine amide tissue factor/factor VIIa inhibitors [My Copy] Bioorganic & Medicinal Chemistry Letters, Vol. 15, No. 3. (01 February 2005), pp. 817-822. by Katrin Groebke Zbinden, David W. Banner, Jean Ackermann, et al.Allan D’Arcy, Daniel Kirchhofer, Yu-Hua Ji, Thomas B. Tschopp, Sabine Wallbaum, Lutz Weber posted to tissuefactor factorvii coagulation by bmduggan on 2009-10-23 17:05:29 as
	Oncogenic events regulate tissue factor expression in colorectal cancer cells: implications for tumor progression and angiogenesis [My Copy] Blood, Vol. 105, No. 4. (15 February 2005), pp. 1734-1741. by Joanne L. Yu, Linda May, Vladimir Lhotak, et al.Siranoush Shahrzad, Senji Shirasawa, Jeffrey I. Weitz, Brenda L. Coomber, Nigel Mackman, Janusz W. Rak posted to tissuefactor cancer by bmduggan on 2009-10-23 15:52:28 as
	Tissue Factor, Thrombin, and Cancer [My Copy] Chest, Vol. 124, No. 3 suppl. (September 2003), pp. 58S-68S. by Frederick R. Rickles, Steven Patierno, Patricia M. Fernandez posted to tissuefactor thrombin review cancer by bmduggan on 2009-10-23 03:48:00 as
	Tissue factor and cancer metastasis: the role of intracellular and extracellular signaling pathways. [My Copy] Molecular Medicine, Vol. 10, No. 1-6. (n 2004), pp. 6-11. by Henri H. Versteeg, Arnold A. Spek, Maikel P. Peppelenbosch, Dick J. Richel posted to tissuefactor review metastasis factorvii cancer by bmduggan on 2009-10-23 02:51:31 as
	Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 32. (8 August 2006), pp. 11844-11849. by Kei-ichi Okazaki, Nobuyasu Koga, Shoji Takada, Jose N. Onuchic, Peter G. Wolynes posted to molecular-dynamics by bmduggan on 2009-09-23 21:22:27 as along with 3 people and 1 group allmensch choonpeng joseph_x_zhou protein_Dyn
	Mechanism of Acetylcholinesterase Inhibition by Fasciculin: A 5-ns Molecular Dynamics Simulation [My Copy] Journal of the American Chemical Society, Vol. 124, No. 21. (1 May 2002), pp. 6153-6161. by Kaihsu Tai, Tongye Shen, Richard H. Henchman, Yves Bourne, Pascale Marchot, J. Andrew McCammon posted to molecular-dynamics allostery by bmduggan on 2009-09-15 20:59:29 as along with 1 person ffranca
	Design Parameters to Control Synthetic Gene Expression in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 9. (14 September 2009), e7002. by Mark Welch, Sridhar Govindarajan, Jon E. Ness, et al.Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson posted to expression by bmduggan on 2009-09-14 18:57:31 as along with 6 people and 1 group dbikard RasmusJensen pala0088 jjray Vincent_Rouilly michaelbarton Synthetic Biology
	Solution structure of recombinant hirudin and the Lys-47 .fwdarw. Glu mutants: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study [My Copy] Biochemistry, Vol. 28, No. 6. (1 March 1989), pp. 2601-2617. by Paul J. M. Folkers, G. Marius Clore, Paul C. Driscoll, Johannes Dodt, Stefanie Koehler, Angela M. Gronenborn posted to solution_structure nmr hirudin by bmduggan on 2009-09-10 02:31:51 as
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to structure-prediction rosetta review by bmduggan on 2009-09-10 02:20:16 as along with 9 people choonpeng mijam kgutwin carlk phoenixzxl krapnik flbarroso saunders gisle
	Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks: Application to the AMBER99SB Force Field [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 3. (1 May 2007), pp. 961-975. by Scott A. Showalter, Rafael Bruschweiler posted to relaxation nmr molecular-dynamics ff99sb by bmduggan on 2009-09-10 02:12:22 as along with 3 people allmensch pablocarb loison
	The structure of a complex of recombinant hirudin and human alpha-thrombin. [My Copy] Science, Vol. 249, No. 4966. (20 July 1990), pp. 277-280. by T. J. Rydel, K. G. Ravichandran, A. Tulinsky, et al.W. Bode, R. Huber, C. Roitsch, J. W. Fenton posted to thrombin hirudin crystal-structure coagulation by bmduggan on 2009-09-10 01:49:04 as along with 1 person flbarroso
	Inhibition mechanisms of hematophagous invertebrate compounds acting on the host blood coagulation and platelet aggregation pathways. [My Copy] Biochimie, Vol. 85, No. 5. (May 2003), pp. 493-500. by Junko Urata, Hideki Shojo, Yuji Kaneko posted to review napc2 nap6 nap5 ixolaris hirudin coagulation by bmduggan on 2009-09-10 01:42:12 as
	Bornyl (3,4,5-trihydroxy)-cinnamate--an optimized human neutrophil elastase inhibitor designed by free energy calculations. [My Copy] Bioorganic & medicinal chemistry, Vol. 16, No. 5. (1 March 2008), pp. 2385-2390. by Thomas Steinbrecher, Andrea Hrenn, Korinna L. Dormann, Irmgard Merfort, Andreas Labahn posted to thermodynamic-integration molecular-dynamics interactions docking by bmduggan on 2009-09-08 20:24:03 as along with 1 person dmobley
	A multistep approach to structure-based drug design: studying ligand binding at the human neutrophil elastase. [My Copy] Journal of medicinal chemistry, Vol. 49, No. 6. (23 March 2006), pp. 1837-1844. by Thomas Steinbrecher, David A. Case, Andreas Labahn posted to thermodynamic-integration molecular-dynamics mmpbsa docking by bmduggan on 2009-09-08 20:23:12 as along with 1 person bilab
	Design of a novel globular protein fold with atomic-level accuracy. [My Copy] Science, Vol. 302, No. 5649. (21 November 2003), pp. 1364-1368. by Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker posted to rosetta protein-design by bmduggan on 2009-09-08 19:47:37 as along with 10 people kgutwin Diego_Prada onufriev apaydin dfgreen jwm hmk heymiki kevinchannon ca3295
	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] Journal of molecular biology, Vol. 234, No. 3. (5 December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted to structure-prediction modeller by bmduggan on 2009-09-08 18:26:25 as along with 16 people pjcite newton1234 viktor21614 mijam dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem medic0747 sebk granujilla
	HADDOCK: A Protein-Protein Docking Approach Based on Biochemical or Biophysical Information [My Copy] Journal of the American Chemical Society, Vol. 125, No. 7. (1 February 2003), pp. 1731-1737. by Cyril Dominguez, Rolf Boelens, Alexandre M. J. J. Bonvin posted to haddock docking by bmduggan on 2009-09-08 18:22:22 as along with 10 people chad_davis laurabailey A_Coletta_Thesis betainverse dgruiz bicko bluvsh1 gloria ruvido yalexeev
	Anatomy of a structural pathway for activation of the catalytic domain of Src kinase Hck [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (1 June 2007), pp. 1096-1112. by Nilesh K. Banavali, Benoît Roux posted to targeted sampling molecular-dynamics interactions allostery by bmduggan on 2009-09-04 15:33:12 as along with 3 people allmensch choonpeng ruvido
	Computation of Conformational Coupling in Allosteric Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000484. by Brian A. Kidd, David Baker, Wendy E. Thomas posted to sampling rosetta allostery by bmduggan on 2009-09-03 20:49:37 as along with 6 people and 1 group sobolevnrm klexa oteri boris_aguilar barry zwang McCammon
	Fast peptidyl cis-trans isomerization within the flexible Gly-rich flaps of HIV-1 protease. [My Copy] Journal of the American Chemical Society, Vol. 127, No. 40. (12 October 2005), pp. 13778-13779. by Donald Hamelberg, J. Andrew Mccammon posted to molecular-dynamics accelerated by bmduggan on 2009-09-03 20:26:29 as along with 1 person pgasper

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nmr	75
molecular-dynamics	60
tissuefactor	34
factorvii	29
relaxation	27
factorx	26
replication-fork	25
coagulation	24
interactions	24
review	20
spombe	17
crystal-structure	16
napc2	16
cancer	14
disulfide	14
thrombosis	14
expression	13
rna	13
sampling	10
nap5	9
swi1	8
automated-assignment	7
equations	7
sphingolipid	7
allostery	6
structure-prediction	6
swi3	6
inhibitor	5
mcm	5
mmpbsa	5
mrc1	5
multicopy	5
rosetta	5
scerevisiae	5
sequence-analysis	5
tim	5
tipin	5
tof1	5
csm3	4
docking	4
inclusion-bodies	4
mat1	4
model-free-approach	4
std	4
accelerated	3
cdc45	3
convergence	3
gins	3
hirudin	3
hsk1	3
protein_dynamics	3
protein-engineering	3
pulse-sequence	3
solution-structure	3
thrombin	3
breast	2
factorix	2
ff99sb	2
haddock	2
nap6	2
phosphatidic_acid	2
protein-ligand	2
protein_phosphatase-1	2
rad53	2
screening	2
structure-determination	2
targeted	2
temperature-coefficients	2
thermodynamic-integration	2
tip4p	2
trosy	2
aceap1	1
apoptosis	1
bicelles	1
ceramidase	1
ceramide	1
csi	1
design	1
dhfr	1
diffusion	1
itc	1
ixolaris	1
mec1	1
metastasis	1
modeller	1
napc4	1
par-2	1
phage	1
protein-design	1
protein_phosphatase-2	1
pseudomonas	1
ramachandran	1
rotamers	1
rpa34	1
rpa70	1
serine-palmitoyltransferase	1
shake	1
solution_structure	1
spr	1
tandem-affinity-purification	1
teaching	1
tfe	1
tip3p	1

bmduggan's library 283 articles Export

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