bobychan's library 52 articles Export

	Consistency analysis of similarity between multiple alignments: prediction of protein function and fold structure from analysis of local sequence motifs. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 939-949. by V. Kunin, B. Chan, E. Sitbon, G. Lithwick, S. Pietrokovski posted to no-tag by bobychan on 2009-03-25 20:11:14 as along with 2 people and 1 group dfdong Einat structural_bioinformatics
	The effect of N-methyl-N'-nitro-N-nitrosoguanidine on cultured dog gallbladder epithelial cells. [My Copy] Hepatology (Baltimore, Md.), Vol. 26, No. 5. (November 1997), pp. 1296-1302. by R. Malik, S. K. Lee, C. E. Savard, et al.D. Oda, W. S. Wong, B. Y. Chan, S. P. Lee posted to no-tag by bobychan on 2009-03-19 23:17:35 as
	Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. [My Copy] The Journal of biological chemistry, Vol. 276, No. 23. (8 June 2001), pp. 19937-19944. by A. D. Long, H. J. Mangalam, B. Y. Chan, L. Tolleri, G. W. Hatfield, P. Baldi posted to microarray by bobychan on 2009-03-19 23:16:26 as
	Using hexamers to predict cis-regulatory modules in Drosophila. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (27 October 2005) by Bob Y. Chan, Dennis Kibler posted to machine_learning by bobychan on 2009-03-19 23:15:12 as along with 6 people and 1 group maximilianh indigoviolet brant troels_marstrand postrational wrowell EisenLab
	Prediction of "hot spots" of aggregation in disease-linked polypeptides. [My Copy] BMC structural biology, Vol. 5 (2005) by N. Sánchez de Groot, I. Pallarés, F. X. Avilés, J. Vendrell, S. Ventura posted to aggregation by bobychan on 2009-03-19 23:12:37 as
	Prediction of “Aggregation-prone” and “Aggregation-susceptible” Regions in Proteins Associated with Neurodegenerative Diseases [My Copy] Journal of Molecular Biology, Vol. 350, No. 2. (08 July 2005), pp. 379-392. by A. Pawar, K. Dubay, J. Zurdo, F. Chiti, M. Vendruscolo, C. Dobson posted to aggregation by bobychan on 2009-03-19 23:12:21 as along with 1 person chiufanlee
	De novo designed peptide-based amyloid fibrils [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 25. (10 December 2002), pp. 16052-16057. by Manuela de La Paz, Kenneth Goldie, Jesús Zurdo, et al.Emmanuel Lacroix, Christopher M. Dobson, Andreas Hoenger, Luis Serrano posted to aggregation by bobychan on 2009-03-19 05:54:21 as along with 3 people and 1 group chiufanlee whitead pjkiley Jiang Research Group
	Common attributes of native-state structures of proteins, disordered proteins, and amyloid [My Copy] Vol. 103, No. 18. (2 May 2006), pp. 6883-6888. by Trinh X. Hoang, Luca Marsella, Antonio Trovato, Flavio Seno, Jayanth R. Banavar, Amos Maritan posted to aggregation by bobychan on 2009-03-19 05:47:35 as along with 1 person ARobson
	FoldUnfold: web server for the prediction of disordered regions in protein chain [My Copy] Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2948-2949. by Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Michail Y. Lobanov posted to aggregation by bobychan on 2009-03-19 05:45:56 as along with 1 person chad_davis
	Are the same or different amino Acid residues responsible for correct and incorrect protein folding? [My Copy] Biochemistry. Biokhimii͡a, Vol. 74, No. 2. (February 2009), pp. 186-193. by O. V. Galzitskaya posted to aggregation by bobychan on 2009-03-19 05:45:33 as
	Intrinsic Disorder in Protein Interactions: Insights From a Comprehensive Structural Analysis [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000316. by Jessica H. Fong, Benjamin A. Shoemaker, Sergiy O. Garbuzynskiy, Michail Y. Lobanov, Oxana V. Galzitskaya, Anna R. Panchenko posted to aggregation by bobychan on 2009-03-19 05:45:21 as along with 7 people kiekyon agustinarce pablocarb chica phoenixzxl zwang bpcusack
	To be folded or to be unfolded? [My Copy] Protein Sci, Vol. 13, No. 11. (November 2004), pp. 2871-2877. by S. O. Garbuzynskiy, M. Y. Lobanov, O. V. Galzitskaya posted to aggregation by bobychan on 2009-03-19 05:45:09 as along with 3 people karbak satsumakenji iantunbridge
	Is it possible to predict amyloidogenic regions from sequence alone? [My Copy] J Bioinform Comput Biol, Vol. 4, No. 2. (April 2006), pp. 373-388. by O. V. Galzitskaya, S. O. Garbuzynskiy, M. Y. Lobanov posted to aggregation by bobychan on 2009-03-19 05:44:18 as along with 1 person and 1 group caporaso biomedical-nlp
	Prediction of amyloid fibril-forming segments based on a support vector machine. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by J. Tian, N. Wu, J. Guo, Y. Fan posted to aggregation by bobychan on 2009-03-19 05:43:35 as
	Identification of amyloid fibril-forming segments based on structure and residue-based statistical potential [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2218-2225. by Zhuqing Zhang, Hao Chen, Luhua Lai posted to aggregation by bobychan on 2009-03-19 05:18:34 as along with 1 person Diego_Prada
	Insight into the structure of amyloid fibrils from the analysis of globular proteins. [My Copy] PLoS computational biology, Vol. 2, No. 12. (15 December 2006) by A. Trovato, F. Chiti, A. Maritan, F. Seno posted to aggregation by bobychan on 2009-03-19 05:18:00 as
	The 3D profile method for identifying fibril-forming segments of proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 11. (14 March 2006), pp. 4074-4078. by M. J. Thompson, S. A. Sievers, J. Karanicolas, M. I. Ivanova, D. Baker, D. Eisenberg posted to aggregation by bobychan on 2009-03-19 05:16:53 as along with 2 people bilab JIreland
	Interaction-based evaluation of the propensity for amyloid formation with cross-β structure☆ [My Copy] Biochemical and Biophysical Research Communications, Vol. 343, No. 4. (19 May 2006), pp. 1262-1271. by M. Saiki, T. Konakahara, H. Morii posted to aggregation by bobychan on 2009-03-19 05:16:35 as
	Prediction of Amyloidogenic and Disordered Regions in Protein Chains [My Copy] PLoS Comput Biol, Vol. 2, No. 12. (29 December 2006), e177. by Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, Michail Y. Lobanov posted to aggregation by bobychan on 2009-03-19 05:16:17 as along with 1 person chiufanlee
	Detecting hidden sequence propensity for amyloid fibril formation [My Copy] Protein Sci, Vol. 13, No. 8. (1 August 2004), pp. 2149-2160. by Sukjoon Yoon, William J. Welsh posted to aggregation by bobychan on 2009-03-19 05:16:00 as along with 1 person chiufanlee
	AGGRESCAN: a server for the prediction and evaluation of "hot spots" of aggregation in polypeptides [My Copy] BMC Bioinformatics, Vol. 8 (27 February 2007), 65. by Oscar Conchillo-Sole, Natalia S. de Groot, Francesc X. Aviles, Josep Vendrell, Xavier Daura, Salvador Ventura posted to aggregation by bobychan on 2009-03-19 05:15:46 as
	Mutagenesis of the central hydrophobic cluster in Aβ42 Alzheimer's peptide [My Copy] FEBS Journal, Vol. 273, No. 3. (2006), pp. 658-668. by Natalia S. de Groot, Francesc X. Aviles, Josep Vendrell, Salvador Ventura posted to aggregation by bobychan on 2009-03-19 05:15:29 as
	The role of aromaticity, exposed surface, and dipole moment in determining protein aggregation rates. [My Copy] Protein science : a publication of the Protein Society, Vol. 13, No. 7. (July 2004), pp. 1939-1941. by G. G. Tartaglia, A. Cavalli, R. Pellarin, A. Caflisch posted to aggregation by bobychan on 2009-03-19 05:13:18 as
	Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. [My Copy] Nat Biotechnol, Vol. 22, No. 10. (October 2004), pp. 1302-1306. by A. M. Fernandez-Escamilla, F. Rousseau, J. Schymkowitz, L. Serrano posted to aggregation by bobychan on 2009-03-19 05:12:53 as along with 2 people chiufanlee Ema
	Prediction of the Absolute Aggregation Rates of Amyloidogenic Polypeptide Chains [My Copy] Journal of Molecular Biology, Vol. 341, No. 5. (27 August 2004), pp. 1317-1326. by Kateri F. DuBay, Amol P. Pawar, Fabrizio Chiti, Jesús Zurdo, Christopher M. Dobson, Michele Vendruscolo posted to aggregation by bobychan on 2009-03-19 05:12:29 as along with 2 people flbarroso chiufanlee
	Rationalization of the effects of mutations on peptide and protein aggregation rates. [My Copy] Nature, Vol. 424, No. 6950. (14 August 2003), pp. 805-808. by F. Chiti, M. Stefani, N. Taddei, G. Ramponi, C. M. Dobson posted to aggregation by bobychan on 2009-03-19 05:12:04 as along with 2 people chiufanlee chad_davis
	Protein aggregation and amyloidosis: confusion of the kinds? [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Frederic Rousseau, Joost Schymkowitz, Luis Serrano posted to aggregation by bobychan on 2009-03-19 05:08:28 as along with 4 people and 1 group aalibes thamelry caporaso allmensch biomedical-nlp
	The importance of sequence diversity in the aggregation and evolution of proteins [My Copy] Nature, Vol. 438, No. 7069., pp. 878-881. by Caroline F. Wright, Sarah A. Teichmann, Jane Clarke, Christopher M. Dobson posted to aggregation by bobychan on 2009-03-19 05:08:09 as along with 5 people wiedenhoeft dayjm tny cjeans jennifermbui
	A molecular dynamics approach to the structural characterization of amyloid aggregation. [My Copy] J Mol Biol, Vol. 357, No. 4. (7 April 2006), pp. 1306-1321. by M. Cecchini, R. Curcio, M. Pappalardo, R. Melki, A. Caflisch posted to aggregation by bobychan on 2009-03-19 05:06:56 as along with 2 people allmensch yalexeev
	Replica exchange molecular dynamics simulations of amyloid peptide aggregation [My Copy] (17 Sep 2004) by M. Cecchini, F. Rao, M. Seeber, A. Caflisch posted to aggregation by bobychan on 2009-03-19 05:06:24 as along with 1 person yalexeev
	Aggregation Propensity of the Human Proteome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000199. by Elodie Monsellier, Matteo Ramazzotti, Niccolò Taddei, Fabrizio Chiti posted to aggregation by bobychan on 2009-03-19 05:04:48 as
	Learning MHC I--peptide binding [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e227-235. by Nebojsa Jojic, Manuel Reyes-Gomez, David Heckerman, Carl Kadie, Ora Schueler-Furman posted to immunogenicity by bobychan on 2008-05-22 22:16:09 as along with 1 person operon
	Predicting Proteolytic Sites in Extracellular Proteins: Only Halfway There. [My Copy] Bioinformatics (4 March 2008) by Yossef Kliger, Eyal Gofer, Assaf Wool, Amir Toporik, Avihay Apatoff, Moshe Olshansky posted to hormones by bobychan on 2008-05-12 23:31:39 as along with 1 person grahamc
	The metric space of proteins-comparative study of clustering algorithms. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1 (2002) by O. Sasson, N. Linial, M. Linial posted to sequence_clustering by bobychan on 2008-05-07 21:28:32 as
	Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment [My Copy] BMC Bioinformatics, Vol. 8 (13 July 2007), 252. by Paolo Ferragina, Raffaele Giancarlo, Valentina Greco, Giovanni Manzini, Gabriel Valiente posted to sequence_clustering by bobychan on 2008-05-07 21:28:14 as along with 4 people and 1 group druvus GustavoLacerda scuffster guhjy Bioinformatics
	CLUSS: Clustering of protein sequences based on a new similarity measure [My Copy] BMC Bioinformatics, Vol. 8 (04 August 2007), 286. by Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski, Alain Fleury posted to sequence_clustering by bobychan on 2008-05-07 19:13:34 as along with 4 people druvus grahamc nklee ninch
	SEQOPTICS: a protein sequence clustering system [My Copy] BMC Bioinformatics, Vol. 7, No. Suppl 4. (2006) by Yonghui Chen, Kevin Reilly, Alan Sprague, Zhijie Guan posted to sequence_clustering by bobychan on 2008-05-07 19:13:24 as
	Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (31 August 2006), 397. by Susmita Datta, Somnath Datta posted to gene_expression_clustering by bobychan on 2008-05-07 19:13:06 as along with 5 people and 1 group colmryan jfr aviad_work ealloza bertelsen BioinfoCIPF
	Spectral clustering of protein sequences. [My Copy] Nucleic Acids Res, Vol. 34, No. 5. (2006), pp. 1571-1580. by A. Paccanaro, J. A. Casbon, M. A. Saqi posted to sequence_clustering by bobychan on 2008-05-07 19:12:12 as along with 1 person knaseanka
	Large scale clustering of protein sequences with FORCE -- A layout based heuristic for weighted cluster editing [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Tobias Wittkop, Jan Baumbach, Francisco Lobo, Sven Rahmann posted to sequence_clustering by bobychan on 2008-05-07 19:11:47 as along with 3 people cmzmasek druvus nklee
	Analysis of an optimal hidden Markov model for secondary structure prediction [My Copy] BMC Structural Biology, Vol. 6 (13 December 2006), 25. by Juliette Martin, Jean-Francois Gibrat, Francois Rodolphe posted to secondary_structure by bobychan on 2008-04-04 00:21:18 as
	Protein secondary structure prediction for a single-sequence using hidden semi-Markov models [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Zafer Aydin, Yucel Altunbasak, Mark Borodovsky posted to secondary_structure by bobychan on 2008-04-04 00:19:39 as along with 1 person isakemalp
	Secondary structure assignment that accurately reflects physical and evolutionary characteristics. [My Copy] BMC Bioinformatics, Vol. 6 Suppl 4 (1 December 2005) by M. V. Cubellis, F. Cailliez, S. C. Lovell posted to secondary_structure by bobychan on 2008-03-19 18:56:13 as along with 1 person and 1 group Einat structural_bioinformatics
	Protein secondary structure assignment revisited: a detailed analysis of different assignment methods [My Copy] BMC Structural Biology, Vol. 5, No. 1. (2005) by Juliette Martin, Guillaume Letellier, Antoine Marin, Jean F. Taly, Alexandre de Brevern, Jean F. Gibrat posted to secondary_structure by bobychan on 2008-03-19 18:53:42 as along with 1 person and 1 group Einat structural_bioinformatics
	Data Mining: Practical Machine Learning Tools and Techniques, Second Edition (Morgan Kaufmann Series in Data Management Systems) [My Copy] (22 June 2005) by Ian H. Witten, Eibe Frank posted to machine_learning weka by bobychan on 2008-03-10 17:48:49 as along with 48 people and 6 groups jo-hannes anib singhsh installe tomjad malibu pinventado alexjfalcao fiacobelli liamtoh333 tijszwinkels ihaque sugarexpletive karinaecomp gstiglic haiyeong imrchen baaic RafaUsyd tmancill druvus dullhunk GJNauta sb-3000 sammydre balicea sdvillal caporaso AbnerCYH brunomelo dejang mdifranc BastianSpanneberg velasco azazello ezralanglois pprett gmonce fernandohbc scorreia_pro csacca jdu napvasconcelos soramame_0518 abellogin quianominorleo eegilbert akastrin mlkd WAND AI biomedical-nlp RiSE CSBBGraphTheory
	Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation. [My Copy] J Mol Biol, Vol. 269, No. 3. (13 June 1997), pp. 423-439. by R. B. Russell, M. A. Saqi, R. A. Sayle, P. A. Bates, M. J. Sternberg posted to protein_solubility by bobychan on 2008-03-10 17:00:14 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	Understanding the relationship between the primary structure of proteins and its propensity to be soluble on overexpression in Escherichia coli. [My Copy] Protein Sci, Vol. 14, No. 3. (March 2005), pp. 582-592. by S. Idicula-Thomas, P. V. Balaji posted to machine_learning protein_solubility by bobychan on 2008-03-10 16:42:05 as
	A support vector machine-based method for predicting the propensity of a protein to be soluble or to form inclusion body on overexpression in Escherichia coli. [My Copy] Bioinformatics, Vol. 22, No. 3. (1 February 2006), pp. 278-284. by S. Idicula-Thomas, A. J. Kulkarni, B. D. Kulkarni, V. K. Jayaraman, P. V. Balaji posted to machine_learning protein_solubility by bobychan on 2008-03-10 16:41:51 as
	Correlation between the structural stability and aggregation propensity of proteins. [My Copy] In Silico Biol, Vol. 7, No. 2. (2007), pp. 225-237. by S. Idicula-Thomas, P. V. Balaji posted to machine_learning protein_solubility by bobychan on 2008-03-10 16:41:39 as
	Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis. [My Copy] J Mol Biol, Vol. 336, No. 1. (6 February 2004), pp. 115-130. by C. S. Goh, N. Lan, S. M. Douglas, et al.B. Wu, N. Echols, A. Smith, D. Milburn, G. T. Montelione, H. Zhao, M. Gerstein posted to machine_learning protein_solubility by bobychan on 2008-03-10 16:41:13 as

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aggregation	27
machine_learning	8
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immunogenicity	1
gene_expression_clustering	1
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weka	1
microarray	1

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