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bootsy's network [29 articles]

Recent papers added to bootsy's library classified by the tag network. You can also see everyone's network.
  • Coherent Coupling of Feedback Loops: A Design Principle of Cell Signaling Networks.
    Bioinformatics (Oxford, England) (2 July 2008)
    by Yung-Keun K Kwon, Kwang-Hyun H Cho
    posted to signaling network feedback_loop by bootsy on 2008-07-06 07:29:22 as **
  • A computational analysis of the protein-protein interaction networks in neurodegenerative diseases
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Joaquin Goni, Francisco Esteban, Nieves V de Mendizabal, Jorge Sepulcre, Sergio A Treijano, Ion Agirrezabal, Pablo Villoslada
    posted to ppi network disease analysis by bootsy on 2008-06-20 14:44:44 as ** along with 3 people AbnerCYH reyez renatomilani
  • NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.
    Nucleic acids research (4 June 2008)
    by Sylvain Brohée, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden
    posted to tool pathway network analysis by bootsy on 2008-06-07 22:48:22 as ** along with 1 person Borelli
  • Principles of microRNA regulation of a human cellular signaling network.
    Mol Syst Biol, Vol. 2 (2006)
    by Q Cui, Z Yu, EO Purisima, E Wang
    posted to signaling regulation network microrna human by bootsy on 2008-05-21 09:58:24 as ** along with 7 people and 3 groups okarsligil jfr marcius tardigrade mtagaya ealloza maralena Bioinformatics BioinfoCIPF SGU-CIPF
  • The guardian's little helper: microRNAs in the p53 tumor suppressor network.
    Cancer research, Vol. 67, No. 23. (1 December 2007), pp. 11099-11101.
    by X He, L He, GJ Hannon
    posted to p53 network microrna by bootsy on 2008-05-16 15:21:34 as **
  • Network-based global inference of human disease genes
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Xuebing Wu, Rui Jiang, Michael Q Zhang, Shao Li
    posted to phenotype network human genotype disease by bootsy on 2008-05-13 08:23:38 as ** along with 6 people Borelli ptrobajo maralena zwang jyuh biomcgary
  • VisANT: an integrative framework for networks in systems biology
    Brief Bioinform (7 May 2008), bbn020.
    by Zhenjun Hu, Evan S Snitkin, Charles Delisi
    posted to tool systems_biology network by bootsy on 2008-05-13 08:16:24 as ** along with 4 people and 1 group maoxizeng maralena sameetmehta jyuh Bioinformatics
  • SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Andreas Draeger, Nadine Hassis, Jochen Supper, Adrian Schroeder, Andreas Zell
    posted to systems_biology sbml s network by bootsy on 2008-05-05 08:35:25 as **
  • Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom
    posted to transcription_factor network multi-source by bootsy on 2008-04-28 08:44:56 as ** along with 4 people bertelsen kengg dquest robertvandenberg
  • A Global Pathway Crosstalk Network
    Bioinformatics (23 April 2008), btn200.
    by Yong Li, Pankaj Agarwal, Dilip Rajagopalan
    posted to pathway network interaction crosstalk by bootsy on 2008-04-28 08:40:23 as ** along with 6 people balicea jyuh AlexanderPico renatomilani maralena thomaskelder
  • Fast grid layout algorithm for biological networks with sweep calculation.
    Bioinformatics (Oxford, England) (18 April 2008)
    by Kaname Kojima, Masao Nagasaki, Satoru Miyano
    posted to systems_biology visualization network layout by bootsy on 2008-04-23 08:03:54 as **
  • Predicting co-complexed protein pairs from heterogeneous data.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by J Qiu, WS Noble
    posted to interaction network prediction protein protein_complexes by bootsy on 2008-04-21 09:53:34 as ** along with 1 person carlk
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to disease network protein by bootsy on 2008-04-18 08:37:00 as ** along with 19 people zwang balicea raiyar ptrobajo jfr brianb paolomarcatili thomaskelder gracio schuylrp jyuh tmmurali Borelli jwdietrich frohike nedwards roys mclarenv phoenixzxl
  • A system for generating transcription regulatory networks with combinatorial control of transcription.
    Bioinformatics (Oxford, England) (8 April 2008)
    by Sushmita Roy, Margaret Werner-Washburne, Terran Lane
    posted to systems_biology network transcription_factor by bootsy on 2008-04-14 09:22:48 as ** along with 2 people roys jyuh
  • Transposable elements and the evolution of regulatory networks.
    Nat Rev Genet (27 March 2008)
    by Cédric Feschotte
    posted to evolution network regulation transposable_elements by bootsy on 2008-03-31 09:20:40 as ** along with 8 people and 1 group pradiptaray smbe2008 eskay roys cmzmasek jonsta247 djkt idonaldson BergmanLab
  • The role of disorder in interaction networks: a structural analysis
    Mol Syst Biol, Vol. 4 (25 March 2008)
    by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein
    posted to interaction network structure by bootsy on 2008-03-31 09:07:31 as ** along with 5 people chad_davis zwang biomcgary maralena phoenixzxl
  • Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics.
    Bioinformatics (19 February 2008)
    by Yung-Keun K Kwon, Kwang-Hyun H Cho
    posted to systems_biology network pathway robustness by bootsy on 2008-02-22 08:21:03 as ** along with 3 people jyuh grahamc shigepong
  • Predicting synthetic rescues in metabolic networks
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Adilson E Motter, Natali Gulbahce, Eivind Almaas, Albert-Laszlo Barabasi
    posted to systems_biology network prediction by bootsy on 2008-02-17 09:45:31 as ** along with 9 people tmmurali debasis kentsis zwang biomcgary cabbagezs westoll shikin shung
  • Petri net-based method for the analysis of the dynamics of signal propagation in signaling pathways
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 209-217.
    by Simon Hardy, Pierre N Robillard
    posted to systems_biology network pathway by bootsy on 2008-01-16 08:03:52 as ** along with 2 people biehl mailund
  • CADLIVE for constructing a large-scale biochemical network based on a simulation-directed notation and its application to yeast cell cycle.
    Nucleic Acids Res, Vol. 31, No. 14. (15 July 2003), pp. 4071-4084.
    by H Kurata, N Matoba, N Shimizu
    posted to systems_biology network notation visualization yeast by bootsy on 2008-01-04 12:35:31 as **
  • STITCH: interaction networks of chemicals and proteins.
    Nucleic Acids Res (15 December 2007)
    by Michael Kuhn, Christian von Mering, Monica Campillos, Lars Juhl J Jensen, Peer Bork
    posted to network protein resource by bootsy on 2007-12-19 09:01:32 as ** along with 6 people and 1 group higueruelo jyuh balicea massivemayhem sobolevnrm larsjuhljensen baker-group
  • Distribution of node characteristics in complex networks
    Proceedings of the National Academy of Sciences (7 November 2007), 0705081104.
    by Juyong Park, Albert-Laszlo Barabasi
    posted to network by bootsy on 2007-11-10 17:13:29 as ** along with 5 people and 1 group tmmurali cjeans roys nolodie JozefK csb_journal_club_public
  • Colloquium Papers: Genomic analysis of the hierarchical structure of regulatory networks
    PNAS, Vol. 103, No. 40. (3 October 2006), pp. 14724-14731.
    by Haiyuan Yu, Mark Gerstein
    posted to systems_biology network by bootsy on 2007-11-08 12:02:31 as ** along with 2 people dquest RobMills
  • Graph Sharpening plus Graph Integration: A Synergy that Improves Protein Functional Classification.
    Bioinformatics (31 October 2007)
    by Hyunjung Shin, Andreas Martin M Lisewski, Olivier Lichtarge
    posted to functional network prediction protein semi_supervised by bootsy on 2007-11-07 07:25:36 as *** along with 2 people tmmurali Pao-Yang
  • A probabilistic view of gene function.
    Nat Genet, Vol. 36, No. 6. (June 2004), pp. 559-564.
    by AG Fraser, EM Marcotte
    posted to functional network by bootsy on 2007-05-15 16:51:46 as ** along with 9 people and 1 group snuppepuppan ziquje lfriedl opheliav wnpx samal grahamc massivemayhem vietanh0 kdl
  • From protein networks to biological systems.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1821-1827.
    by P Uetz, RL Finley
    posted to systems_biology network by bootsy on 2007-04-28 14:56:35 as ** along with 3 people kuhn iris_2001 maralena
  • Novel Approaches for Analyzing Biological Networks
    Journal of Combinatorial Optimization, Vol. 10, No. 1. (August 2005), pp. 23-39.
    by Balabhaskar Balasundaram, Sergiy Butenko, Svyatoslav Trukhanov
    posted to analysis network by bootsy on 2007-04-28 14:52:51 as **
  • Evolution, Interactions, and Biological Networks
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11.
    by Joshua S Weitz, Philip N Benfey, Ned S Wingreen
    posted to network by bootsy on 2007-04-28 14:52:04 as ** along with 13 people and 1 group skumagai eldan aalibes cmmorel balajis wnpx cerkut jhatrimatri josepe timothee srfairclough hmk Ema contact-id
  • Function prediction and protein networks.
    Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 191-198.
    by MA Huynen, B Snel, C von Mering, P Bork
    posted to functional network protein by bootsy on 2007-04-28 13:12:17 as ***** along with 4 people and 1 group carlk lfriedl balajis lyongu kdl
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