bootsy's tool [22 articles] Export

Recent papers added to bootsy's library classified by the tag tool. You can also see everyone's tool.

	A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions [My Copy] RNA, Vol. 14, No. 11. (23 November 2008), pp. 2290-2296. by Chad J. Creighton, Ankur K. Nagaraja, Samir M. Hanash, Martin M. Matzuk, Preethi H. Gunaratne posted to expression microrna tool by bootsy on 2008-09-26 08:52:00 as along with 9 people and 1 group frohike jfr valeriehilgers ealloza guhjy giovenko Stew druvus pengchy microRNA database
	Synchronous vs. Asynchronous Modeling of Gene Regulatory Networks. [My Copy] Bioinformatics (Oxford, England) (9 July 2008) by Abhishek Garg, Alessandro Dicara, Ioannis Xenarios, Luis Mendoza, Giovanni De D. Micheli posted to boolean_simulation qualitative_modeling regulatory_network systems_biology tool by bootsy on 2008-07-14 08:05:54 as along with 2 people guhjy lemke
	Identifying functional modules in protein-protein interaction networks: an integrated exact approach. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008) by M. T. Dittrich, G. W. Klau, A. Rosenwald, T. Dandekar, T. Müller posted to functional_module ppi tool by bootsy on 2008-07-06 07:43:33 as along with 2 people marck guhjy
	MicroRNA prediction with a novel ranking algorithm based on random walks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008) by Y. Xu, X. Zhou, W. Zhang posted to microrna prediction tool by bootsy on 2008-07-06 07:35:57 as
	A max-margin model for efficient simultaneous alignment and folding of RNA sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008) by C. B. Do, C. S. Foo, S. Batzoglou posted to rna tool by bootsy on 2008-07-06 07:33:45 as along with 3 people and 1 group zanexu mhamada stajich Mycology
	Systems biology driven software design for the research enterprise. [My Copy] BMC bioinformatics, Vol. 9 (25 June 2008), 295. by John Boyle, Christopher Cavnor, Sarah Killcoyne, Ilya Shmulevich posted to software systems_biology tool by bootsy on 2008-06-30 11:16:35 as along with 11 people pablocarb daforerog fgibson druvus jfr guhjy jmuhlich raistrick reyez GeeSharpMinor dullhunk
	The Systems Biology Research Tool: evolvable open-source software [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Jeremiah Wright, Andreas Wagner posted to systems_biology tool by bootsy on 2008-06-30 11:00:21 as along with 8 people ssaka GustavoLacerda cswinburne jfr guhjy reyez renatomilani dpf
	Combinatorial microRNA target predictions [My Copy] Nat Genet, Vol. 37, No. 5. (03 May 2005), pp. 495-500. by Azra Krek, Dominic Grun, Matthew N. Poy, et al.Rachel Wolf, Lauren Rosenberg, Eric J. Epstein, Philip MacMenamin, Isabelle da Piedade, Kristin C. Gunsalus, Markus Stoffel, Nikolaus Rajewsky posted to microrna prediction regulation tool by bootsy on 2008-06-10 08:01:05 as along with 12 people and 1 group stharward alessandroparini jfr tmmurali textoris eckart_bindewald tardigrade mtagaya feipan lp2 heliopais maralena microRNA
	NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by S. Brohée, K. Faust, G. Lima-Mendez, et al.O. Sand, R. Janky, G. Vanderstocken, Y. Deville, J. van Helden posted to analysis network pathway tool by bootsy on 2008-06-07 22:48:22 as along with 7 people carlk ptrobajo natstreet druvus jfr Borelli guhjy
	RNALogo: a new approach to display structural RNA alignment. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by Tzu-Hao H. Chang, Jorng-Tzong T. Horng, Hsien-Da D. Huang posted to alignment nc_rna structure tool by bootsy on 2008-05-24 10:15:54 as along with 2 people daforerog reyez
	WAR: Webserver for aligning structural RNAs. [My Copy] Nucleic acids research (20 May 2008) by Elfar Torarinsson, Stinus Lindgreen posted to alignment nc_rna structure tool by bootsy on 2008-05-23 09:00:02 as
	Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 November 2007), 437. by Xueping Yu, Jimmy Lin, Donald Zack, Jiang Qian posted to cis_regulatory_elements tool transcription_factor by bootsy on 2008-05-19 13:23:13 as along with 10 people roys isimpson guhjy chad_davis mikaelhuss nklee maximilianh idonaldson njcitulike snow_dragon
	MicroRNAs accurately identify cancer tissue origin [My Copy] Nat Biotech, Vol. 26, No. 4. (23 April 2008), pp. 462-469. by Nitzan Rosenfeld, Ranit Aharonov, Eti Meiri, et al.Shai Rosenwald, Yael Spector, Merav Zepeniuk, Hila Benjamin, Norberto Shabes, Sarit Tabak, Asaf Levy, Danit Lebanony, Yaron Goren, Erez Silberschein, Nurit Targan, Alex Ben-Ari, Shlomit Gilad, Netta Sion-Vardy, Ana Tobar, Meora Feinmesser, Oleg Kharenko, Ofer Nativ, Dvora Nass, Marina Perelman, Ady Yosepovich, Bruria Shalmon, Sylvie Polak-Charcon, Eddie Fridman, Amir Avniel, Isaac Bentwich, Zvi Bentwich, Dalia Cohen, Ayelet Chajut, Iris Barshack posted to cancer classification expression microrna tool by bootsy on 2008-05-19 09:37:10 as along with 12 people and 1 group danaiancu tonamswish valeriehilgers frohike tmmurali jdiezperezj maralena ealloza giovenko guhjy jfr srp33 microRNA
	R-Coffee: a web server for accurately aligning noncoding RNA sequences. [My Copy] Nucleic acids research (15 May 2008) by Sébastien Moretti, Andreas Wilm, Desmond G G. Higgins, Ioannis Xenarios, Cédric Notredame posted to alignment nc_rna tool by bootsy on 2008-05-18 18:50:04 as
	MicroRNA identification based on sequence and structure alignment [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3610-3614. by Xiaowo Wang, Jing Zhang, Jin Gu, Tao He, Xuegong Zhang, Yanda Li posted to alignment microrna sequence tool by bootsy on 2008-05-15 10:38:18 as along with 3 people and 2 groups balajis NamJinWu dchughes G4ID Genetics-of-Gambling
	Characterization and Identification of MicroRNA Core Promoters in Four Model Species [My Copy] PLoS Comput Biol, Vol. 3, No. 3. (9 March 2007), e37. by Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang posted to microrna microrna_regulation tool by bootsy on 2008-05-14 22:34:48 as along with 14 people and 3 groups thegoose2 daforerog rpatward natstreet druvus tharris heliopais jfr tardigrade andersbj cdawson ale maralena xili03 C. elegans / WormBase microRNA GIG
	VisANT: an integrative framework for networks in systems biology [My Copy] Brief Bioinform (7 May 2008), bbn020. by Zhenjun Hu, Evan S. Snitkin, Charles Delisi posted to network systems_biology tool by bootsy on 2008-05-13 08:16:24 as along with 8 people and 1 group Scis0000002 druvus jfr sameetmehta maralena guhjy maoxizeng srp33 Bioinformatics
	The Beta Workbench: a computational tool to study the dynamics of biological systems [My Copy] Brief Bioinform, Vol. 9, No. 5. (1 September 2008), pp. 437-449. by Lorenzo Dematte, Corrado Priami, Alessandro Romanel posted to systems_biology tool by bootsy on 2008-05-13 08:16:01 as along with 3 people jvb guhjy kalvala
	Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 165-171. by Xiaowo Wang, Jin Gu, Michael Q. Zhang, Yanda Li posted to conservation drosophila microrna_regulation tool by bootsy on 2008-05-08 12:45:06 as along with 5 people and 1 group druvus djkt heliopais Alexander_Kanitz maralena microRNA
	GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by A. G. Jegga, J. Chen, S. Gowrisankar, et al.M. A. Deshmukh, R. Gudivada, S. Kong, V. Kaimal, B. J. Aronow posted to microrna regulation transcription_factor tool by bootsy on 2008-05-08 12:36:40 as along with 2 people and 1 group guhjy wenhan Bioinformatics
	Putative promoter regions of miRNA genes involved in evolutionarily conserved regulatory systems among vertebrates [My Copy] Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 303-308. by Shuji Fujita, Hideo Iba posted to microrna regulation tool by bootsy on 2008-03-13 21:02:45 as along with 6 people and 1 group megraw hendrik85 Garamonfok heliopais cabbagezs maralena microRNA
	Yeast-based functional genomics and proteomics technologies: the first 15 years and beyond. [My Copy] Biotechniques, Vol. 40, No. 5. (May 2006), pp. 625-644. by B. Suter, D. Auerbach, I. Stagljar posted to functional genomics proteomic tool by bootsy on 2007-04-28 13:29:46 as along with 3 people guhjy yeastyboy Dualsystems

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microrna	109
microrna_regulation	44
systems_biology	43
regulation	41
functional	38
network	31
expression	28
prediction	24
transcription_factor	23
tool	22
nc_rna	18
protein	18
evolution	17
notch_pathway	17
cancer	16
pathway	16
bootsy	15
splicing	15
genomics	14
epigenetics	13
analysis	12
mouse	11
ontology	9
signaling	9
database	8
disease	8
drosophila	7
human	7
structure	7
genomic_context	6
post_transcriptional	6
robustness	6
software	6
somitogenesis	6
visualization	6
chromosomal_location	5
interaction	5
plants	5
qualitative_modeling	5
regulatory_network	5
semantic_web	5
stem_cell	5
alignment	4
annotation	4
bioinformatic	4
c_elegans	4
gene_set	4
machine_learning	4
mammalian	4
ppi	4
processing	4
quantitative_modeling	4
resource	4
tissue-specific	4
yeast	4
arabidopsis	3
molecular_clock	3
motifs	3
proteomic	3
sequence	3
ath	2
cell_differentiation	2
chromatin	2
conservation	2
dna	2
feedback_loop	2
microrna_cluster	2
neurodegeneration	2
neurospora	2
p53	2
petri_net	2
promoter	2
rna	2
roc	2
sbml	2
semi_supervised	2
statistics	2
adaptation	1
boolean_simulation	1
cell_proliferation	1
cis_regulatory_elements	1
classification	1
cog	1
crosstalk	1
data_managment	1
dna_modification	1
environment	1
functional_module	1
fungi	1
genotype	1
layout	1
literature_mining	1
molecular	1
multi-source	1
notation	1
ortholog_proteins	1
phenotype	1
protein_complexes	1
s	1
t	1
transcriptome	1
transposable_elements	1
wnt_pathway	1
zebrafish	1

bootsy's tool [22 articles] Export

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