bozdagd's library 131 articles Export

	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to sequencing algorithm by bozdagd on 2009-10-22 18:54:22 as along with 19 people and 1 group cthachuk hzoltan seb1 adijr heliopais darian maren n00c nuin skembel cassj Neeperando helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus iSEEM
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to sequencing bwt algorithm by bozdagd on 2009-10-22 18:53:34 as along with 33 people and 4 groups lianping hzoltan cthachuk maren adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to sequencing algorithm by bozdagd on 2009-10-22 18:52:54 as along with 17 people hzoltan fishtank burak ThomasDOtto n00c mmartin natstreet adijr druvus felsani xingxu azazello orzenil dswan pengchy cthachuk nuin
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing algorithm by bozdagd on 2009-10-22 18:51:48 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	ZOOM! Zillions of oligos mapped [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted to sequencing algorithm by bozdagd on 2009-10-22 18:49:35 as along with 20 people hzoltan gbenson adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar APRegier natstreet druvus caseybrown djkt wisdom_love umit Neeperando Stew
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to sequencing algorithm by bozdagd on 2009-10-22 18:48:56 as along with 22 people and 4 groups heliopais jfr cthachuk hzoltan ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to sequencing maq algorithm by bozdagd on 2009-09-21 17:37:03 as along with 37 people and 2 groups heliopais hzoltan cthachuk darshan adijr darian jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew D. Smith, Zhenyu Xuan, Michael Q. Zhang posted to sequencing rmap algorithm by bozdagd on 2009-09-21 17:36:42 as along with 18 people hzoltan seb1 heliopais katholt inesdesantiago n00c maren floatingpoint lukaswindhager natstreet druvus jfr pengchy farhat ghattem mdimon kmdaily caseybrown
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah W. Lam, Siu-Ming M. Yiu, Karsten Kristiansen, Jun Wang posted to soap sequencing bwt algorithm by bozdagd on 2009-09-21 17:36:07 as along with 26 people and 6 groups hzoltan agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven L. Salzberg posted to sequencing bwt bowtie algorithm by bozdagd on 2009-09-21 17:35:38 as along with 36 people and 4 groups jfr hzoltan cthachuk darshan fstrozzi adijr debasis polivares torfinnnome n00c talponer jmcq rschulz ghattem operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to sequencing cloudburst by bozdagd on 2009-08-20 18:45:07 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils KCL & UCL Bioinformatics Bioinformatics
	GMAP: a genomic mapping and alignment program for mRNA and EST sequences [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1859-1875. by Thomas D. Wu, Colin K. Watanabe posted to sequencing by bozdagd on 2009-08-05 15:46:07 as along with 5 people maren natstreet druvus olympos yoanjacquemin
	Biclusters Evaluation Based on Shifting and Scaling Patterns [My Copy] Intelligent Data Engineering and Automated Learning - IDEAL 2007 (2007), pp. 840-849. by Juan Nepomuceno, Troncoso, Jesús Aguilar–ruiz, Jorge García–gutiérrez posted to biclustering by bozdagd on 2009-05-15 21:37:52 as
	What Color Is Your Jacobian? Graph Coloring for Computing Derivatives [My Copy] SIAM Rev., Vol. 47, No. 4. (2005), pp. 629-705. by Assefaw H. Gebremedhin, Fredrik Manne, Alex Pothen posted to coloring review by bozdagd on 2009-04-16 21:05:29 as
	The Design, Implementation, and Evaluation of mpiBLAST [My Copy] In In Proceedings of ClusterWorld 2003 (2003) by Aaron E. Darling, Lucas Carey, Wu-Chun Feng posted to blast parallel sequencing by bozdagd on 2009-03-30 16:33:00 as along with 1 person AaronDarling
	Massively parallel genomic sequence search on the Blue Gene/P architecture [My Copy] In SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing (2008), pp. 1-11. by Heshan Lin, Pavan Balaji, Ruth Poole, Carlos Sosa, Xiaosong Ma, Wu C. Feng posted to blast parallel sequencing by bozdagd on 2009-03-30 16:23:52 as
	Efficient Data Access for Parallel BLAST [My Copy] Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International In Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International (2005), pp. 72b-72b. by Heshan Lin, Xiaosong Ma, P. Chandramohan, A. Geist, N. Samatova posted to blast parallel sequencing by bozdagd on 2009-03-30 16:21:33 as
	Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (02 June 2006), 280. by David Reiss, Nitin Baliga, Richard Bonneau posted to biclustering review by bozdagd on 2009-02-27 21:34:14 as along with 6 people meanerelk parnell surajitray tvdbulck frohike tmmurali
	Emergent unsupervised clustering paradigms with potential application to bioinformatics. [My Copy] Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 677-690. by David J. Miller, Yue Wang, George Kesidis posted to clustering review by bozdagd on 2009-02-27 21:32:20 as along with 5 people marti svozil bertelsen VGreiff dps
	How does gene expression clustering work? [My Copy] Nature Biotechnology, Vol. 23, No. 12. (01 December 2005), pp. 1499-1501. by Patrik D'haeseleer posted to no-tag by bozdagd on 2009-02-27 21:29:57 as along with 6 people and 1 group jperkins Yanno okarsligil sesejun tabu renatomilani Bioinformatics
	Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. [My Copy] Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 331-343. by P. C. Boutros, A. B. Okey posted to clustering microarray review by bozdagd on 2009-02-27 21:29:21 as along with 10 people tonamswish jfr metamerist tabu samal srfairclough akastrin xili03 bertelsen renatomilani
	A systematic comparison and evaluation of biclustering methods for gene expression data [My Copy] Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1122-1129. by Amela Prelic, Stefan Bleuler, Philip Zimmermann, et al.Anja Wille, Peter Buhlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele, Eckart Zitzler posted to biclustering review by bozdagd on 2009-02-27 21:27:28 as along with 6 people barriot meanerelk jperkins ocs cassj ihpark
	Spectral biclustering of microarray data: coclustering genes and conditions. [My Copy] Genome research, Vol. 13, No. 4. (April 2003), pp. 703-716. by Yuval Kluger, Ronen Basri, Joseph T. Chang, Mark Gerstein posted to biclustering spectral by bozdagd on 2009-01-08 20:49:52 as along with 8 people rmj001 tuck yuval filippone shigepong dps tvdbulck balicea
	Hierarchical Density-Based Clustering of Categorical Data and a Simplification [My Copy] Advances in Knowledge Discovery and Data Mining (2007), pp. 11-22. by Bill Andreopoulos, Aijun An, Xiaogang Wang posted to clustering subspace by bozdagd on 2008-11-13 22:57:29 as
	Fuzzy co-clustering of documents and keywords [My Copy] Fuzzy Systems, 2003. FUZZ '03. The 12th IEEE International Conference on, Vol. 2 (2003), pp. 772-777 vol.2. by K. Kummamuru, A. Dhawale, R. Krishnapuram posted to clustering subspace by bozdagd on 2008-11-13 22:55:18 as along with 2 people fukken noa
	PARTCAT: A Subspace Clustering Algorithm for High Dimensional Categorical Data [My Copy] Neural Networks, 2006. IJCNN '06. International Joint Conference on In Neural Networks, 2006. IJCNN '06. International Joint Conference on (2006), pp. 4406-4412. by Guojun Gan, Jianhong Wu, Zijiang Yang posted to clustering subspace by bozdagd on 2008-11-13 22:52:50 as
	A framework for ontology-driven subspace clustering [My Copy] In KDD '04: Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining (2004), pp. 623-628. by Jinze Liu, Wei Wang, Jiong Yang posted to clustering subspace by bozdagd on 2008-11-13 22:49:44 as along with 1 person sukru
	Clustering categorical data: an approach based on dynamical systems [My Copy] The VLDB Journal, Vol. 8, No. 3. (25 February 2000), pp. 222-236. by David Gibson, Jon Kleinberg, Prabhakar Raghavan posted to clustering subspace by bozdagd on 2008-11-13 22:47:25 as
	Automatic Subspace Clustering of High Dimensional Data [My Copy] Data Mining and Knowledge Discovery, Vol. 11, No. 1. (July 2005), pp. 5-33. by Rakesh Agrawal, Johannes Gehrke, Dimitrios Gunopulos, Prabhakar Raghavan posted to clustering subspace by bozdagd on 2008-11-13 22:35:02 as along with 4 people syoyo bigbossman egallop amargoli
	CLICKS: an effective algorithm for mining subspace clusters in categorical datasets [My Copy] In KDD '05: Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining (2005), pp. 736-742. by Mohammed J. Zaki, Markus Peters, Ira Assent, Thomas Seidl posted to clustering subspace by bozdagd on 2008-11-13 22:28:50 as
	Bipartite isoperimetric graph partitioning for data co-clustering [My Copy] Data Min. Knowl. Discov., Vol. 16, No. 3. (2008), pp. 276-312. by Manjeet Rege, Ming Dong, Farshad Fotouhi posted to clustering subspace by bozdagd on 2008-11-13 22:04:13 as
	CACTUS---clustering categorical data using summaries [My Copy] In KDD '99: Proceedings of the fifth ACM SIGKDD international conference on Knowledge discovery and data mining (1999), pp. 73-83. by Venkatesh Ganti, Johannes Gehrke, Raghu Ramakrishnan posted to clustering subspace by bozdagd on 2008-11-13 22:01:06 as
	A scalable parallel subspace clustering algorithm for massive data sets [My Copy] Parallel Processing, 2000. Proceedings. 2000 International Conference on In Parallel Processing, 2000. Proceedings. 2000 International Conference on (2000), pp. 477-484. by H. S. Nagesh, S. Goil, A. Choudhary posted to clustering subspace by bozdagd on 2008-11-13 21:36:33 as
	Subspace clustering for high dimensional categorical data [My Copy] SIGKDD Explor. Newsl., Vol. 6, No. 2. (2004), pp. 87-94. by Guojun Gan, Jianhong Wu posted to clustering subspace by bozdagd on 2008-11-13 21:33:04 as
	Finding generalized projected clusters in high dimensional spaces [My Copy] SIGMOD Rec., Vol. 29, No. 2. (2000), pp. 70-81. by Charu C. Aggarwal, Philip S. Yu posted to clustering subspace by bozdagd on 2008-11-13 21:30:25 as
	Fast algorithms for projected clustering [My Copy] In SIGMOD '99: Proceedings of the 1999 ACM SIGMOD international conference on Management of data (1999), pp. 61-72. by Charu C. Aggarwal, Joel L. Wolf, Philip S. Yu, Cecilia Procopiuc, Jong S. Park posted to clustering subspace by bozdagd on 2008-11-13 21:27:02 as along with 1 person Jeanette_Auer
	FINDIT: a fast and intelligent subspace clustering algorithm using dimension voting [My Copy] Information and Software Technology, Vol. 46, No. 4. (15 March 2004), pp. 255-271. by Kyoung-Gu Woo, Jeong-Hoon Lee, Myoung-Ho Kim, Yoon-Joon Lee posted to clustering subspace by bozdagd on 2008-11-13 20:00:36 as along with 1 person noa
	Information-theoretic co-clustering [My Copy] In KDD '03: Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining (2003), pp. 89-98. by Inderjit S. Dhillon, Subramanyam Mallela, Dharmendra S. Modha posted to clustering subspace by bozdagd on 2008-11-13 19:42:19 as along with 8 people socwangnan sergiolopez mapio jekky mmunson ngrandy koles Simplicity
	A cluster ensemble method for clustering categorical data [My Copy] Information Fusion, Vol. 6, No. 2. (June 2005), pp. 143-151. by Z. He, X. Xu, S. Deng posted to clustering full-space by bozdagd on 2008-11-13 19:10:53 as
	Projected clustering for categorical datasets [My Copy] Pattern Recogn. Lett., Vol. 27, No. 12. (2006), pp. 1405-1417. by Minho Kim, R. S. Ramakrishna posted to clustering full-space by bozdagd on 2008-11-13 19:09:08 as
	Extensions to the k-Means Algorithm for Clustering Large Data Sets with Categorical Values [My Copy] Data Min. Knowl. Discov., Vol. 2, No. 3. (1998), pp. 283-304. by Zhexue Huang posted to clustering full-space by bozdagd on 2008-11-13 19:06:35 as
	A density-based algorithm for discovering clusters in large spatial databases with noise [My Copy] (1996), pp. 226-231. by Martin Ester, Hans-peter Kriegel, S. Jörg, Xiaowei Xu posted to clustering full-space by bozdagd on 2008-11-13 19:04:49 as along with 4 people mpd008 avulanov chrisd sophykim
	Efficient and Effective Clustering Methods for Spatial Data Mining [My Copy] In VLDB '94: Proceedings of the 20th International Conference on Very Large Data Bases (1994), pp. 144-155. by Raymond T. Ng, Jiawei Han posted to clustering full-space by bozdagd on 2008-11-13 19:01:36 as
	BIRCH: an efficient data clustering method for very large databases [My Copy] In SIGMOD '96: Proceedings of the 1996 ACM SIGMOD international conference on Management of data (1996), pp. 103-114. by Tian Zhang, Raghu Ramakrishnan, Miron Livny posted to clustering full-space by bozdagd on 2008-11-13 18:57:37 as
	The "Best K" for entropy-based categorical data clustering [My Copy] In SSDBM'2005: Proceedings of the 17th international conference on Scientific and statistical database management (2005), pp. 253-262. by Keke Chen, Ling Liu posted to clustering full-space by bozdagd on 2008-11-13 18:54:09 as
	Parallel I/O scheduling using randomized, distributed edge coloring algorithms [My Copy] J. Parallel Distrib. Comput., Vol. 63, No. 6. (2003), pp. 611-618. by Dannie Durand, Ravi Jain, David Tseytlin posted to edge-coloring by bozdagd on 2008-10-21 21:47:10 as
	A Path Following Algorithm for Graph Matching [My Copy] Image and Signal Processing (2008), pp. 329-337. by Mikhail Zaslavskiy, Francis Bach, Jean-Philippe Vert posted to graph-matching by bozdagd on 2008-10-21 21:30:24 as
	Sparse Matrix Ordering Methods for Interior Point Linear Programming [My Copy] INFORMS J. on Computing, Vol. 10, No. 1. (1998), pp. 107-113. by Edward Rothberg, Bruce Hendrickson posted to ordering by bozdagd on 2008-10-21 20:56:54 as
	Sparse matrix ordering with Scotch [My Copy] High-Performance Computing and Networking (1997), pp. 370-378. by François Pellegrini, Jean Roman posted to ordering by bozdagd on 2008-10-21 20:54:59 as
	Inferring transcriptional modules from ChIP-chip, motif and microarray data. [My Copy] Genome biology, Vol. 7, No. 5. (2006) by Karen Lemmens, Thomas Dhollander, Tijl De Bie, et al.Pieter Monsieurs, Kristof Engelen, Bart Smets, Joris Winderickx, Bart De Moor, Kathleen Marchal posted to hyper-clustering by bozdagd on 2008-10-15 21:32:29 as along with 4 people roys alokm jfr kristallreiner

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sequencing	69
clustering	28
algorithm	26
review	15
subspace	15
454	12
dag-scheduling	11
local-alignment	11
chip-seq	10
biclustering	8
full-space	7
sage	7
application	6
global-alignment	6
blast	5
subset-seeds	5
bwt	3
chip-chip	3
copy-number	3
parallel	3
shotgun	3
suffix-tree	3
arh	2
microarray	2
mummer	2
ordering	2
smith-waterman	2
bowtie	1
cloudburst	1
coloring	1
edge-coloring	1
fasta	1
graph-matching	1
hyper-clustering	1
maq	1
mean-shift	1
needleman-wunsch	1
presentation	1
rmap	1
soap	1
spectral	1
triclustering	1

bozdagd's library 131 articles Export

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