bpb's library 215 articles Export

	The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria [My Copy] Science, Vol. 323, No. 5912. (16 January 2009), pp. 379-382. by Nancy A. Moran, Heather J. Mclaughlin, Rotem Sorek posted to evolution gccontent genome by bpb on 2009-01-21 13:48:50 as along with 7 people and 2 groups kinestetika JeremyZucker emptyhb abizar behindtherabbit pansapiens djkt MetabolicModeling iSEEM
	Mapping short DNA sequencing reads and calling variants using mapping quality scores [My Copy] Genome Research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to alignment dna genome genomics maq by bpb on 2008-08-29 09:55:48 as along with 37 people and 2 groups heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman gdb farhat SIMR bioinformatics BergmanLab
	Maq: Mapping and Assembly with Qualities [My Copy] by Heng Li, Richard Durbin posted to alignment genomics unpublished website by bpb on 2008-08-11 10:54:45 as along with 1 person cthachuk
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to alignment phyloalignment phylogeny by bpb on 2008-06-26 12:19:19 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	Genome sequencing in microfabricated high-density picolitre reactors. [My Copy] Nature, Vol. 437, No. 7057. (15 September 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju J. Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun Heen H. Ho, Chun He H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum B. Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan Fredrik F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to 454 sequencing by bpb on 2008-05-01 11:47:03 as along with 37 people and 5 groups rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to genome human structure-variation variation by bpb on 2008-05-01 09:25:30 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Quality scores and SNP detection in sequencing-by-synthesis systems. [My Copy] Genome research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to genome nst quality snp by bpb on 2008-05-01 09:11:00 as along with 12 people n00c jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown dbensasson Neeperando sharpton GustavoLacerda
	The complete genome of an individual by massively parallel DNA sequencing. [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876. by David A. Wheeler, Maithreyan Srinivasan, Michael Egholm, et al.Yufeng Shen, Lei Chen, Amy McGuire, Wen He, Yi-Ju J. Chen, Vinod Makhijani, G. Thomas Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L. Turcotte, Gerard P. Irzyk, James R. Lupski, Craig Chinault, Xing-zhi Z. Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M. Muzny, Marcel Margulies, George M. Weinstock, Richard A. Gibbs, Jonathan M. Rothberg posted to 454 genome human watson wgs by bpb on 2008-04-30 10:26:48 as along with 23 people and 2 groups rshe n00c jonilaserson jessopher daforerog behindtherabbit frohike reyez pengchy adijr jo_davies jfr orzenil dullhunk djkt ramensky psique caseybrown melting dbensasson Neeperando Huub_odc guhjy parkinson's disease references microbiology_nijmegen
	Subnets of scale-free networks are not scale-free: Sampling properties of networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 12. (22 March 2005), pp. 4221-4224. by Michael P. H. Stumpf, Carsten Wiuf, Robert M. May posted to network sampling scale-free statistics by bpb on 2008-04-21 13:25:55 as along with 13 people and 1 group houniao007 davidecellai colmryan sergiun dylanwalker kentsis griota lshaw somasanyal iris_2001 mjoach Pao-Yang ilkert complex networks
	The structure of protein evolution and the evolution of protein structure [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Richard A. Goldstein posted to function lattice-model protein protein-evolution structure by bpb on 2008-04-21 12:36:21 as along with 4 people and 3 groups yuslinaz barry zwang cmzmasek structural_bioinformatics McCammon Bioinformatics
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to cnv genome genomics structure-variation variation by bpb on 2008-04-04 17:19:40 as along with 41 people and 7 groups sameersoi lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	Bayesian correction for SNP ascertainment bias [My Copy] Lect. Notes Comput. Sci., Vol. 3885 LNAI, pp. 262-273. by M. M. Abad-Grau, P. Sebastiani posted to bayesian bayessnp linkage-disequilibrium by bpb on 2008-03-11 09:41:34 as
	Bayesian estimates of linkage disequilibrium [My Copy] BMC Genetics, Vol. 8 (25 June 2007), 36. by Paola Sebastiani, Maria M. Abad-Grau posted to bayesian bayessnp linkage-disequilibrium snp by bpb on 2008-03-11 09:39:44 as along with 1 person penpen926
	MOLECULAR SIGNATURES OF NATURAL SELECTION [My Copy] Annual Review in Genetics, Vol. 39, No. 1. (2005), pp. 197-218. by R. Nielsen posted to detection genome mutation selection variation by bpb on 2008-02-18 10:57:22 as along with 12 people ckenaley dalexander diamantis ilyashl renewang operon pradiptaray eckart_bindewald timflutre dmc BioNica jasonflannick
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to alignment phyloalignment phylogeny test by bpb on 2008-01-25 10:03:51 as along with 33 people and 2 groups Jporci operon walshtp darian ptrobajo friendpine skembel druvus treangen aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Bayesian coestimation of phylogeny and sequence alignment [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 83. by Gerton Lunter, Istvan Miklos, Alexei Drummond, Jens Jensen, Jotun Hein posted to alignment bayesian phyloalignment phylogeny by bpb on 2008-01-25 10:02:38 as along with 10 people cmzmasek operon treangen alexeid druvus pradiptaray AaronDarling timflutre adsmitty Patola
	A Space-Time Process Model for the Evolution of DNA Sequences [My Copy] Genetics, Vol. 139, No. 2. (1 February 1995), pp. 993-1005. by Z. Yang posted to gamma model paml phylogenetics by bpb on 2007-12-13 15:48:31 as along with 5 people timflutre gjuggler pradiptaray tale friendpine
	Orthologous repeats and mammalian phylogenetic inference. [My Copy] Genome Res, Vol. 15, No. 7. (July 2005), pp. 998-1006. by A. Bashir, C. Ye, A. L. Price, V. Bafna posted to mammal phylogeny by bpb on 2007-12-13 14:16:50 as along with 1 person aprasad
	Congruent mammalian trees from mitochondrial and nuclear genes using Bayesian methods. [My Copy] Mol Biol Evol, Vol. 21, No. 2. (February 2004), pp. 397-403. by A. Reyes, C. Gissi, F. Catzeflis, E. Nevo, G. Pesole, C. Saccone posted to mammal mtdna phylogeny by bpb on 2007-12-13 13:46:19 as along with 1 person aprasad
	Mammalian mitogenomic relationships and the root of the eutherian tree. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 8151-8156. by U. Arnason, J. A. Adegoke, K. Bodin, et al.E. W. Born, Y. B. Esa, A. Gullberg, M. Nilsson, R. V. Short, X. Xu, A. Janke posted to mammal mtdna phylogeny by bpb on 2007-12-13 13:42:27 as along with 1 person aprasad
	Ultraconserved Elements in the Human Genome [My Copy] Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325. by Gill Bejerano, Michael Pheasant, Igor Makunin, et al.Stuart Stephen, W. James Kent, John S. Mattick, David Haussler posted to genome human uce ultraconserved by bpb on 2007-12-03 14:32:11 as along with 18 people and 5 groups clearbluespring daforerog ilyashl treangen Ema karbak barry ujh alexisgallagher aprasad balicea dchughes pradiptaray djkt sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
	Computational and experimental identification of novel human imprinted genes [My Copy] Genome Res. (30 November 2007), gr.6584707. by Philippe P. Luedi, Fred S. Dietrich, Jennifer R. Weidman, Jason M. Bosko, Randy L. Jirtle, Alexander J. Hartemink posted to genes genome human imprinted by bpb on 2007-12-02 19:43:07 as along with 5 people ilyashl djkt clearbluespring proudhon bpcusack
	2x genomes Does depth matter? [My Copy] Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1547-1549. by Phil Green posted to genome read-depth sequencing by bpb on 2007-12-02 19:42:22 as along with 4 people and 1 group gjuggler balicea dchughes cisevol BergmanLab
	Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans [My Copy] PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310. by David J. Begun, Alisha K. Holloway, Kristian Stevens, et al.Ladeana W. Hillier, Yu-Ping Poh, Matthew W. Hahn, Phillip M. Nista, Corbin D. Jones, Andrew D. Kern, Colin N. Dewey, Lior Pachter, Eugene Myers, Charles H. Langley posted to drosophila genome genomics polymorphism population population-dynamics selection by bpb on 2007-11-29 16:39:08 as along with 3 people pradiptaray emptyhb dmc
	COMPARATIVE GENOMICS AT THE VERTEBRATE EXTREMES [My Copy] Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 456-465. by Dario Boffelli, Marcelo A. Nobrega, Edward M. Rubin posted to adaptive-evolution evolution genomics by bpb on 2007-11-28 14:29:16 as along with 1 person pradiptaray
	BLASTO: a tool for searching orthologous groups [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W678-682. by Yi Zhou, Laura F. Landweber posted to blast ortholog search server by bpb on 2007-11-08 16:36:21 as along with 4 people druvus Keywan guhjy cerca
	Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity [My Copy] Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis In Dedicated in memory of Dr. Tony Carrano, Vol. 616, No. 1-2. (1 March 2007), pp. 46-59. by D. J. Hedges, P. L. Deininger posted to error genome integrity transposon by bpb on 2007-11-07 15:23:14 as
	Accounting for Bias from Sequencing Error in Population Genetic Estimates. [My Copy] Mol Biol Evol (2 November 2007) by Philip L F L. Johnson, Montgomery Slatkin posted to error sequencing statistics by bpb on 2007-11-06 15:08:18 as along with 3 people and 1 group jmeppley dpollard bpcusack EisenLab
	Haplotype homozygosity and derived alleles in the human genome. [My Copy] Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1053-1059. by A. E. Fry, C. J. Trafford, M. A. Kimber, M. S. Chan, K. A. Rockett, D. P. Kwiatkowski posted to alelle derived diversity haplotype selection snp by bpb on 2007-11-06 14:58:20 as along with 2 people balajis ashandanj
	A Long-Term Evolutionary Pressure on the Amount of Noncoding DNA [My Copy] Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2344-2353. by Carole Knibbe, Antoine Coulon, Olivier Mazet, Jean-Michel Fayard, Guillaume Beslon posted to dna evolution noncoding theoretical by bpb on 2007-10-31 10:49:20 as along with 5 people and 2 groups operon aprasad pradiptaray cisevol coldmeadow cis-regulatory-evolution BergmanLab
	SVA elements are nonautonomous retrotransposons that cause disease in humans. [My Copy] Am J Hum Genet, Vol. 73, No. 6. (December 2003), pp. 1444-1451. by E. M. Ostertag, J. L. Goodier, Y. Zhang, H. H. Kazazian posted to alu line1 sva transposon by bpb on 2007-10-29 16:44:35 as along with 1 person yoanjacquemin
	A Map of Recent Positive Selection in the Human Genome. [My Copy] PLoS Biol, Vol. 4, No. 3. (7 March 2006) by Benjamin F F. Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K. Pritchard posted to genome human positive-selection scan selection snp test by bpb on 2007-10-25 15:33:31 as along with 24 people and 7 groups athma ilyashl renewang diamantis stevanspringer kentsis balajis indigoviolet ejeffery pradiptaray madhadron breden tiago larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan shoshin iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
	Beyond 100 genomes. [My Copy] Genome Biol, Vol. 4, No. 5. (2003) by P. Janssen, B. Audit, I. Cases, et al.N. Darzentas, L. Goldovsky, V. Kunin, N. Lopez-Bigas, J. M. Peregrin-Alvarez, J. B. Pereira-Leal, S. Tsoka, C. A. Ouzounis posted to genome informatics by bpb on 2007-10-25 15:10:17 as along with 2 people shung dullhunk
	Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination. [My Copy] Genetics, Vol. 151, No. 1. (January 1999), pp. 221-238. by H. Akashi posted to dna fitness mutation polymorphism selection by bpb on 2007-10-19 09:37:50 as along with 3 people emptyhb skumagai CharlesM
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to conserved evolution genome selection by bpb on 2007-09-19 14:21:14 as along with 20 people and 4 groups thegoose2 farhat skembel alessandroparini tharris aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
	Diet and the evolution of human amylase gene copy number variation. [My Copy] Nat Genet (9 September 2007) by George H H. Perry, Nathaniel J J. Dominy, Katrina G G. Claw, et al.Arthur S S. Lee, Heike Fiegler, Richard Redon, John Werner, Fernando A A. Villanea, Joanna L L. Mountain, Rajeev Misra, Nigel P P. Carter, Charles Lee, Anne C C. Stone posted to amylase cnv evolution genome human positive selection by bpb on 2007-09-19 09:10:12 as along with 7 people sameersoi shwu waszak balicea dchughes saru ajw
	Challenges and standards in integrating surveys of structural variation [My Copy] Nature Genetics, Vol. 39, No. 7 Suppl. (27 June 2007), pp. S7-S15. by Stephen W. Scherer, Charles Lee, Ewan Birney, et al.David M. Altshuler, Evan E. Eichler, Nigel P. Carter, Matthew E. Hurles, Lars Feuk posted to genome structure-variation by bpb on 2007-09-10 10:22:30 as along with 7 people and 1 group owenlancaster dakelley brianb guhjy rdiaz jlangdon jasonflannick Bioinformatics
	Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion. [My Copy] Genome Res (4 September 2007) by Timothy R R. Dreszer, Gregory D D. Wall, David Haussler, Katherine S S. Pollard posted to evolution genome human male variation by bpb on 2007-09-10 10:19:47 as along with 1 person novara
	On State-Space Reduction in Multi-Strain Pathogen Models, with an Application to Antigenic Drift in Influenza A [My Copy] PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e159. by Sergey Kryazhimskiy, Ulf Dieckmann, Simon A. Levin, Jonathan Dushoff posted to antigenicity drift evolution influenza by bpb on 2007-09-10 10:05:21 as along with 3 people phoenixzxl e3bo zwang
	Thousands of human mobile element fragments undergo strong purifying selection near developmental genes [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 8005-8010. by Craig B. Lowe, Gill Bejerano, David Haussler posted to evolution genome human selection transposon by bpb on 2007-09-07 10:17:17 as along with 3 people and 1 group pradiptaray cisevol FMoncini cis-regulatory-evolution
	Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. [My Copy] Genetics, Vol. 123, No. 3. (November 1989), pp. 585-595. by F. Tajima posted to evolution selection test by bpb on 2007-09-06 17:37:23 as along with 3 people renewang bjorns pradiptaray
	Biological implications of SNPs in signal peptide domains of human proteins. [My Copy] Proteins (6 August 2007) by Hamdi Jarjanazi, Sevtap Savas, Noel Pabalan, James W W. Dennis, Hilmi Ozcelik posted to human protein signal-peptide snp by bpb on 2007-09-05 14:33:43 as
	ARACHNE: A Whole-Genome Shotgun Assembler [My Copy] Genome Res., Vol. 12, No. 1. (1 January 2002), pp. 177-189. by Serafim Batzoglou, David B. Jaffe, Ken Stanley, et al.Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P. Mesirov, Eric S. Lander posted to assembly genome wgs by bpb on 2007-09-05 12:42:37 as along with 11 people and 3 groups natstreet dakelley dayjm balajis indigoviolet balicea ccr azazello wenhan tpreeprem Neeperando EisenLab MBLAB gatech-compgenomics
	Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi [My Copy] Genome Res., Vol. 17, No. 7. (2007), pp. 1101-1110. by H. K. Jong, M. S. Waterman, L. M. Li posted to diploid genome haplotype by bpb on 2007-09-05 12:41:21 as along with 2 people dakelley nhp
	The Diploid Genome Sequence of an Individual Human [My Copy] PLoS Biol, Vol. 5, No. 10. (4 September 2007), e254. by Samuel Levy, Granger Sutton, Pauline C. Ng, et al.Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R. MacDonald, Andy W. Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A. Kravitz, Dana A. Busam, Karen Y. Beeson, Tina C. McIntosh, Karin A. Remington, Josep F. Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter posted to diploid genome human indel snp by bpb on 2007-09-05 09:25:11 as along with 30 people and 1 group n00c jgill pachorip Scis0000002 daforerog jessopher psique dakelley noushin jo_davies frohike adijr Neeperando operon carlblesius balicea skhadar dullhunk djkt jackjackjjj ramensky massivemayhem jasonbobe PredictER lp2 cabbagezs xingxu hpaces maburkitt nhp Bioinformatics
	An RNA gene expressed during cortical development evolved rapidly in humans [My Copy] Nature, Vol. 443, No. 7108. (16 August 2006), pp. 167-172. by Katherine S. Pollard, Sofie R. Salama, Nelle Lambert, et al.Marie-Alexandra Lambot, Sandra Coppens, Jakob S. Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel, Andrew D. Kern, Colette Dehay, Haller Igel, Manuel Ares, Pierre Vanderhaeghen, David Haussler posted to evolution human rna selection by bpb on 2007-09-04 17:30:08 as along with 15 people and 3 groups galka8_diploma brewbooks sriesenfeld Ema brian marcius nickluscombe larios joshuashen ealloza ce2benna lusk bpcusack nolodie rrhudson EBI-regulation BioinfoCIPF SGU-CIPF
	New methods for detecting lineage-specific selection [My Copy] Lect. Notes Comput. Sci., Vol. 3909 LNBI, pp. 190-205. by A. Siepel, K. S. Pollard, D. Haussler posted to evolution hmm model selection test by bpb on 2007-09-04 17:24:55 as along with 2 people sriesenfeld pradiptaray
	Forces shaping the fastest evolving regions in the human genome. [My Copy] PLoS genetics, Vol. 2, No. 10. (13 October 2006) by K. S. Pollard, S. R. Salama, B. King, et al.A. D. Kern, T. Dreszer, S. Katzman, A. Siepel, J. S. Pedersen, G. Bejerano, R. Baertsch, K. R. Rosenbloom, J. Kent, D. Haussler posted to evolution genome human noncoding by bpb on 2007-09-04 17:24:29 as along with 5 people leemond31 galka8_diploma tuck pradiptaray rrhudson
	Mitochondrial and nuclear genes present conflicting portraits of human origins [My Copy] Mol Biol Evol, Vol. 14, No. 2. (1 February 1997), pp. 166-172. by J. Hey posted to chimp genome human mtdna origin by bpb on 2007-09-04 15:45:52 as
	Statistical significance for genomewide studies [My Copy] Proc. Natl. Acad. Sci. U. S. A., Vol. 100, No. 16. (2003), pp. 9440-9445. by J. D. Storey, R. Tibshirani posted to genome multiple-hypothesis-testing pvalue test by bpb on 2007-09-04 10:09:29 as along with 1 person pradiptaray

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evolution	70
genome	53
influenza	51
human	37
phylogenetics	29
selection	20
variation	16
glycosylation	15
protein	15
maximum-likelihood	14
h3	13
computational	12
antigenicity	10
bioinformatics	10
structure	10
alignment	8
chimp	8
function	8
haemagglutinin	8
phylogeny	8
popcorn	8
protein-evolution	8
test	8
thermophiles	8
population	7
snp	7
wgs	7
assembly	6
hpv	6
polymorphism	6
review	6
tool	6
bayes	5
genomics	5
noncoding	5
population-dynamics	5
psychrophiles	5
transposon	5
aminoacid	4
ancestral-reconstruction	4
bayesian	4
cnv	4
enzyme	4
gamma	4
hiv	4
linkage-disequilibrium	4
prediction	4
temperature	4
virus	4
deletion	3
dna	3
folding	3
genetics	3
h1	3
haplotype	3
lattice-model	3
mammal	3
matrix	3
mtdna	3
mutation	3
phyloalignment	3
positive-selection	3
poss	3
sequencing	3
site-class	3
stability	3
statistics	3
structure-prediction	3
structure-variation	3
454	2
adaptive-evolution	2
bayessnp	2
diploid	2
error	2
graph	2
indel	2
mathematics	2
model	2
pychrophiles	2
rna	2
search	2
siteclass	2
ssaha	2
1mqn	1
alelle	1
alu	1
amylase	1
bias	1
blast	1
classification	1
compchem	1
composition	1
conserved	1
covariation	1
crucial	1
derived	1
design	1
detection	1
disease	1
diversity	1
drift	1
drosophila	1
entropy	1
exponential	1
fitness	1
gccontent	1
genes	1
h5	1
h7	1
h9	1
hapmap	1
hmm	1
hypothesis	1
imprinted	1
informatics	1
integrity	1
java	1
jazz	1
library	1
likelihood-ratio-test	1
line1	1
male	1
maq	1
maximum-parsimony	1
molecular	1
mortality	1
multiple-hypothesis-testing	1
network	1
nst	1
origin	1
origin-of-life	1
ortholog	1
overview	1
pa	1
paml	1
pb1	1
pb2	1
phenotype	1
phusion	1
phylogenetic-networks	1
phyml	1
polymerase	1
positive	1
predicition	1
psychorphiles	1
pvalue	1
quality	1
rate	1
read-depth	1
rna-world	1
rosetta	1
sampling	1
scale-free	1
scan	1
sequence-space	1
server	1
signal-peptide	1
smp	1
sva	1
systemsbiology	1
theoretical	1
transcription-factor	1
uce	1
ultraconserved	1
unpublished	1
vaccination	1
visualisation	1
wag	1
watson	1
website	1

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