Statistical correlation between protein secondary structure and messenger RNA stem-loop structure. Export

@article{citeulike:3006053, abstract = {A new integrated sequence-structure database, called IADE (Integrated ASTRAL-DSSP-EMBL), incorporating matching mRNA sequence, amino acid sequence, and protein secondary structural data, is constructed. It includes 648 protein domains. Based on the IADE database, we studied the relation between RNA stem-loop frequencies and protein secondary structure. It was found that the alpha-helices and beta-strands on proteins tend to be preferably "coded" by mRNA stem region, while the coils on proteins tend to be preferably "coded" by mRNA loop region. These tendencies are more obvious if we observe the structural words (SWs). An SW is defined by a four-amino-acid-fragment that shows the pronounced secondary structural (alpha-helix or beta-strand) propensity. It is demonstrated that the deduced correlation between protein and mRNA structure can hardly be explained as the stochastic fluctuation effect.}, address = {Department of Physics, Inner Mongolia University, Hohhot 010021, China.}, author = {Jia, Mengwen and Luo, Liaofu and Liu, Ciquan}, citeulike-article-id = {3006053}, citeulike-linkout-0 = {http://dx.doi.org/10.1002/bip.10496}, citeulike-linkout-1 = {http://view.ncbi.nlm.nih.gov/pubmed/14691936}, citeulike-linkout-2 = {http://www.hubmed.org/display.cgi?uids=14691936}, doi = {10.1002/bip.10496}, issn = {0006-3525}, journal = {Biopolymers}, keywords = {cited\_by\_chamary, protein\_rna\_structure}, month = {January}, number = {1}, pages = {16--26}, posted-at = {2008-07-15 16:22:14}, priority = {2}, title = {Statistical correlation between protein secondary structure and messenger RNA stem-loop structure.}, url = {http://dx.doi.org/10.1002/bip.10496}, volume = {73}, year = {2004} }

TY - JOUR ID - citeulike:3006053 L3 - citeulike-article-id:3006053 N2 - A new integrated sequence-structure database, called IADE (Integrated ASTRAL-DSSP-EMBL), incorporating matching mRNA sequence, amino acid sequence, and protein secondary structural data, is constructed. It includes 648 protein domains. Based on the IADE database, we studied the relation between RNA stem-loop frequencies and protein secondary structure. It was found that the alpha-helices and beta-strands on proteins tend to be preferably "coded" by mRNA stem region, while the coils on proteins tend to be preferably "coded" by mRNA loop region. These tendencies are more obvious if we observe the structural words (SWs). An SW is defined by a four-amino-acid-fragment that shows the pronounced secondary structural (alpha-helix or beta-strand) propensity. It is demonstrated that the deduced correlation between protein and mRNA structure can hardly be explained as the stochastic fluctuation effect. IS - 1 JF - Biopolymers SN - 0006-3525 AD - Department of Physics, Inner Mongolia University, Hohhot 010021, China. EP - 26 TI - Statistical correlation between protein secondary structure and messenger RNA stem-loop structure. VL - 73 SP - 16 KW - cited_by_chamary KW - protein_rna_structure AU - Jia, Mengwen AU - Luo, Liaofu AU - Liu, Ciquan PY - 2004/01// UR - http://dx.doi.org/10.1002/bip.10496 ER -