brant's library 368 articles Export

	Allele-Specific Chromatin Remodeling in the ZPBP2/GSDMB/ORMDL3 Locus Associated with the Risk of Asthma and Autoimmune Disease [My Copy] The American Journal of Human Genetics, Vol. 85, No. 3. (11 September 2009), pp. 377-393. by Dominique J. Verlaan, Soizik Berlivet, Gary M. Hunninghake, et al.Anne-Marie Madore, Mathieu Larivière, Sanny Moussette, Elin Grundberg, Tony Kwan, Manon Ouimet, Bing Ge posted to nucleosomes expression_domain cis-regulation chromatin association by brant on 2009-09-08 22:03:52 as along with 1 person pkonings
	Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition. [My Copy] Nature structural & molecular biology (6 September 2009) by Mari-Liis L. Visnapuu, Eric C. Greene posted to nucleosomes deposition by brant on 2009-09-08 21:03:53 as
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sequencing next_generation cnv by brant on 2009-09-02 19:23:10 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum. [My Copy] Development (Cambridge, England), Vol. 136, No. 18. (15 September 2009), pp. 3153-3160. by Jessica Doran D. Cande, Vivek S. Chopra, Michael Levine posted to heart enhancer-promoter by brant on 2009-08-29 23:49:09 as along with 2 people and 2 groups cisevol emmahe cis-regulatory-evolution BergmanLab
	Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2036-2051. by Andrew L. Hufton, Susanne Mathia, Helene Braun, et al.Udo Georgi, Hans Lehrach, Martin Vingron, Albert J. Poustka, Georgia Panopoulou posted to noncoding genome conserved by brant on 2009-08-29 23:41:40 as along with 3 people and 1 group djkt alhufton maximilianh Journal picks
	Seeder: Discriminative Seeding DNA Motif Discovery. [My Copy] Bioinformatics (Oxford, England) (21 August 2008) by François Fauteux, Mathieu Blanchette, Martina V V. Strömvik posted to motif_finding by brant on 2008-09-11 22:20:22 as along with 7 people wowalz druvus natstreet nuin maximilianh isimpson idonaldson
	The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila [My Copy] Cell, Vol. 134, No. 4. (22 August 2008), pp. 610-623. by Thomas M. Williams, Jane E. Selegue, Thomas Werner, Nicolas Gompel, Artyom Kopp, Sean B. Carroll posted to carroll evo-devo sexual_dimorphism by brant on 2008-09-11 22:19:27 as along with 2 people emptyhb caseybrown
	Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology [My Copy] Nucl. Acids Res., Vol. 36, No. 19. (1 November 2008), e122. by Richard Cronn, Aaron Liston, Matthew Parks, David S. Gernandt, Rongkun Shen, Todd Mockler posted to bias multiplex solexa by brant on 2008-09-10 23:31:10 as along with 7 people usagi-kirin reyez mlog pdexheimer abizar ojabado aconesa
	Intron length increases oscillatory periods of gene expression in animal cells [My Copy] Genes & Development, Vol. 22, No. 17. (1 September 2008), pp. 2342-2346. by Ian A. Swinburne, David G. Miguez, Dirk Landgraf, Pamela A. Silver posted to expression intron by brant on 2008-09-10 23:27:40 as along with 2 people and 1 group inesdesantiago stajich Mycology
	Turnover of binding sites for transcription factors involved in early Drosophila development [My Copy] Gene, Vol. 310 (22 May 2003), pp. 215-220. by Javier Costas, Fernando Casares, Jorge Vieira posted to binding binding_site site turnover by brant on 2008-08-04 15:20:55 as
	The lepidopteran transposon vector, piggyBac, mediates germ-line transformation in the Mediterranean fruit fly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 13. (23 June 1998), pp. 7520-7525. by A. M. Handler, S. D. McCombs, M. J. Fraser, S. H. Saul posted to tephritid transposons by brant on 2008-06-11 19:47:53 as
	Medfly transposable elements: diversity, evolution, genomic impact and possible applications. [My Copy] Insect biochemistry and molecular biology, Vol. 34, No. 2. (February 2004), pp. 139-148. by L. M. Gomulski, C. Torti, V. Murelli, M. Bonizzoni, G. Gasperi, A. R. Malacrida posted to tephritid transposons by brant on 2008-06-11 19:46:22 as along with 1 person operon
	Inferences on the population structure and colonization process of the invasive oriental fruit fly, Bactrocera dorsalis (Hendel) [My Copy] Molecular Ecology, Vol. 16, No. 17. (September 2007), pp. 3522-3532. by N. Aketarawong, M. Bonizzoni, S. Thanaphum, et al.L. M. Gomulski, G. Gasperi, A. R. Malacrida, C. R. Gugliemino posted to colonization population structure tephritid by brant on 2008-06-11 19:45:43 as
	Bactrocera tryoni and closely related pest tephritids--molecular analysis and prospects for transgenic control strategies [My Copy] Insect Biochemistry and Molecular Biology In Insect Transgenesis and its Potential Role in Agriculture, Vol. 34, No. 2. (February 2004), pp. 167-176. by Kathryn A. Raphael, Steven Whyard, Deborah Shearman, Xin An, Marianne Frommer posted to review tephritid transgenic by brant on 2008-06-11 02:31:18 as
	Extending Genomics to Natural Communities and Ecosystems [My Copy] Science, Vol. 320, No. 5875. (25 April 2008), pp. 492-495. by Thomas G. Whitham, Stephen P. Difazio, Jennifer A. Schweitzer, et al.Stephen M. Shuster, Gery J. Allan, Joseph K. Bailey, Scott A. Woolbright posted to ecology mapping molecular review by brant on 2008-05-15 19:05:15 as along with 6 people and 3 groups natstreet ArtemPankin neteler farhat jago jlgreen Khavkin's lab Green Lab iSEEM
	From Genotype to Phenotype: Systems Biology Meets Natural Variation [My Copy] Science, Vol. 320, No. 5875. (25 April 2008), pp. 495-497. by Philip N. Benfey, Thomas Mitchell-Olds posted to genotype-phenotype mapping review by brant on 2008-05-15 19:04:38 as along with 18 people and 5 groups bertelsen balicea maren Keywan slevy03 Zephyrus natstreet stringertheory applebyb zwang bootsy echinotrix ArtemPankin adacier guhjy ashko kaniko daed Ondex SABR - Bioenergy project VUMCGenomics Roswell Cancer Crosstalk R.E.A.D Khavkin's lab
	Conserved distances between vertebrate highly conserved elements [My Copy] Human Molecular Genetics, Vol. 15, No. 19. (1 October 2006), pp. 2911-2922. by Sun, Hong, Skogerbo, Geir posted to spacing ultraconserved_regions vertebrate by brant on 2008-05-15 18:46:00 as along with 1 person operon
	Multiple conserved regulatory elements with overlapping functions determine Sox10 expression in mouse embryogenesis. [My Copy] Nucleic Acids Res (26 September 2007) by Torsten Werner, Alexander Hammer, Mandy Wahlbuhl, Michael R R. Bösl, Michael Wegner posted to conservation enhancer_finding vertebrate by brant on 2008-05-15 18:30:51 as along with 1 person maximilianh
	Purifying Selection Maintains Highly Conserved Noncoding Sequences in Drosophila. [My Copy] Mol Biol Evol (23 July 2007) by Sònia Casillas, Antonio Barbadilla, Casey M M. Bergman posted to evolution molecular non-coding by brant on 2008-05-13 19:01:10 as along with 7 people and 2 groups operon dpollard emilyhare Garamonfok Stew cisevol emptyhb EisenLab cis-regulatory-evolution
	Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites. [My Copy] Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714. by E. T. Dermitzakis, C. M. Bergman, A. G. Clark posted to evolution molecular non-coding by brant on 2008-05-13 19:00:46 as along with 2 people and 1 group cisevol emptyhb cis-regulatory-evolution
	Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. [My Copy] Genome Res, Vol. 11, No. 8. (August 2001), pp. 1335-1345. by C. M. Bergman, M. Kreitman posted to evolution molecular non-coding by brant on 2008-05-13 19:00:14 as along with 4 people and 2 groups penka adijr cisevol hugoparker Nie cis-regulatory-evolution
	Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome [My Copy] Genome Biology, Vol. 3, No. 12. (2002) by Casey Bergman, Barret Pfeiffer, Diego R. Limas, et al.Roger Hoskins, Andreas Gnirke, Chris Mungall, Adrienne Wang, Brent Kronmiller, Joanne Pacleb, Soo Park, Mark Stapleton, Kenneth Wan, Reed George, Pieter de Jong, Juan Botas, Gerald Rubin, Susan Celniker posted to annotation comparative drosophila non-conserved by brant on 2008-05-13 18:58:59 as along with 5 people and 2 groups hrogers indigoviolet dpollard nklee cisevol EisenLab cis-regulatory-evolution
	The words of the regulatory code are arranged in a variable manner in highly conserved enhancers. [My Copy] Developmental biology, Vol. 318, No. 2. (15 June 2008), pp. 366-377. by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, et al.Jean Christophe C. Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G. Thies, Gerd Scherer, Uwe Strähle posted to enhancer evolution plasticity by brant on 2008-05-09 17:54:12 as along with 3 people and 1 group lusk maximilianh cisevol cis-regulatory-evolution
	Global regulatory logic for specification of an embryonic cell lineage [My Copy] Proceedings of the National Academy of Sciences (14 April 2008), 0711220105. by Paola Oliveri, Qiang Tu, Eric H. Davidson posted to cis-regulation development network urchin by brant on 2008-05-09 17:50:34 as along with 2 people jjray Minty
	Differences in the selection response of serially repeated color pattern characters: standing variation, development, and evolution [My Copy] BMC Evolutionary Biology, Vol. 8 (26 March 2008), 94. by Cerisse E. Allen, Patricia Beldade, Bas J. Zwaan, Paul M. Brakefield posted to butterfly evolution patterning by brant on 2008-05-09 17:49:58 as
	Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 17. (29 April 2008), pp. 6362-6367. by Hurng-Yi Y. Wang, Yonggui Fu, Mary Sara S. McPeek, et al.Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien L. Wu, Chung-I I. Wu posted to cis-trans drosophila by brant on 2008-05-05 20:15:43 as along with 4 people daveGerrard roys maximilianh djkt
	Evidence for stabilizing selection in a eukaryotic enhancer element [My Copy] Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567. by Michael Z. Ludwig, Casey Bergman, Nipam H. Patel, Martin Kreitman posted to enhancer evolution thesis turnover by brant on 2008-04-25 11:09:35 as along with 5 people and 1 group gderwin lusk ranb cisevol emptyhb cis-regulatory-evolution
	Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change. [My Copy] Development, Vol. 125, No. 5. (March 1998), pp. 949-958. by M. Z. Ludwig, N. H. Patel, M. Kreitman posted to enhancer eve evolution stripe thesis by brant on 2008-04-25 10:40:07 as along with 4 people and 2 groups lusk adepace cisevol emptyhb EisenLab cis-regulatory-evolution
	Functional Evolution of a cis-Regulatory Module [My Copy] PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93. by Michael Z. Ludwig, Arnar Palsson, Elena Alekseeva, Casey M. Bergman, Janaki Nathan, Martin Kreitman posted to complementation enhancer functional thesis by brant on 2008-04-25 10:32:51 as along with 5 people and 3 groups gderwin mimulus_99 blobbybirdman cisevol emptyhb UH - Computational Biology cis-regulatory-evolution Myxo group
	Genomic sources of regulatory variation in cis and in trans. [My Copy] Cell Mol Life Sci, Vol. 62, No. 16. (August 2005), pp. 1779-1783. by P. J. Wittkopp posted to cis-trans evolution review thesis by brant on 2008-04-25 09:34:18 as along with 2 people and 1 group adepace mimulus_99 EisenLab
	Modulating Hox gene functions during animal body patterning [My Copy] Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 893-904. by Joseph C. Pearson, Derek Lemons, William Mcginnis posted to enhancer evolution hox review thesis by brant on 2008-04-25 09:33:05 as along with 3 people and 2 groups xico emilyhare BioMaxi EisenLab WetBiology
	A gene-centered C. elegans protein-DNA interaction network. [My Copy] Cell, Vol. 125, No. 6. (16 June 2006), pp. 1193-1205. by B. Deplancke, A. Mukhopadhyay, W. Ao, et al.A. M. Elewa, C. A. Grove, N. J. Martinez, R. Sequerra, L. Doucette-Stamm, J. S. Reece-Hoyes, I. A. Hope, H. A. Tissenbaum, S. E. Mango, A. J. Walhout posted to 1-hybrid worm by brant on 2008-04-25 08:40:20 as along with 4 people and 1 group thegoose2 tharris tardigrade johncumbers C. elegans / WormBase
	A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system [My Copy] Nucl. Acids Res. (10 March 2008), gkn048. by Marcus B. Noyes, Xiangdong Meng, Atsuya Wakabayashi, Saurabh Sinha, Michael H. Brodsky, Scot A. Wolfe posted to 1-hybrid awesome binding_site_model by brant on 2008-04-25 08:37:32 as along with 1 person emptyhb
	Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key [My Copy] Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 5-10. by Tanya Vavouri, Gayle K. Mcewen, Adam Woolfe, Walter R. Gilks, Greg Elgar posted to enhancer-promoter_interaction journal_club thesis by brant on 2008-04-24 10:52:10 as along with 3 people and 1 group sujaikumar maximilianh cisevol cis-regulatory-evolution
	Transcriptional regulation of the Drosophila gene zen by competing Smad and Brinker inputs. [My Copy] Genes & development, Vol. 15, No. 3. (1 February 2001), pp. 340-351. by C. Rushlow, P. F. Colosimo, M. C. Lin, M. Xu, N. Kirov posted to zen by brant on 2008-04-24 10:24:05 as
	Regulation of even-skipped stripe 2 in the Drosophila embryo. [My Copy] The EMBO journal, Vol. 11, No. 11. (November 1992), pp. 4047-4057. by S. Small, A. Blair, M. Levine posted to cooperativity eve stripe thesis by brant on 2008-04-24 10:16:39 as along with 1 person emptyhb
	hairy mediates dominant repression in the Drosophila embryo. [My Copy] The EMBO journal, Vol. 16, No. 10. (15 May 1997), pp. 2883-2891. by S. Barolo, M. Levine posted to long-range_repressor thesis by brant on 2008-04-24 09:55:11 as
	Differential in vivo requirements for oligomerization during Groucho-mediated repression [My Copy] EMBO Reports, Vol. aop, No. current. (23 November 2007) by Barbara H. Jennings, Mark S. Wainwright, David Ish-Horowicz posted to groucho thesis by brant on 2008-04-24 09:48:50 as
	Groucho/TLE family proteins and transcriptional repression. [My Copy] Gene, Vol. 249, No. 1-2. (16 May 2000), pp. 1-16. by G. Chen, A. J. Courey posted to groucho long-range_repressor review thesis by brant on 2008-04-24 09:41:35 as
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted to binding_site in_vitro by brant on 2008-04-24 09:32:08 as along with 9 people and 2 groups absterga jjray dpollard emilyhare adepace aswin skoch3 blobbybirdman emptyhb EisenLab Koch_Lab
	Sequence Context affects the rate of short insertions and deletions in flies and primates [My Copy] Genome Biology, Vol. 9 (21 February 2008), R37. by Amos Tanay, Eric D. Siggia posted to drosophila human indel rate by brant on 2008-04-24 08:50:41 as along with 8 people emptyhb timflutre bpcusack djkt lusk biomcgary gjuggler aprasad
	Ensembl 2005. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by T. Hubbard, D. Andrews, M. Caccamo, et al.G. Cameron, Y. Chen, M. Clamp, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, J. Gilbert, M. Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, F. Kokocinsci, D. London, I. Longden, G. McVicker, C. Melsopp, P. Meidl, S. Potter, G. Proctor, M. Rae, D. Rios, M. Schuster, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, S. Trevanion, A. Ureta-Vidal, J. Vogel, S. White, C. Woodwark, E. Birney posted to ensembl number_of_genes thesis by brant on 2008-04-24 06:02:18 as along with 5 people and 1 group timhubbard raizada Cortel pcahan1 chad_davis Raizada-Lab
	How many genes in a genome? [My Copy] Genome biology, Vol. 5, No. 1. (2003) by B. Oliver, B. Leblanc posted to drosophila number_of_genes thesis by brant on 2008-04-24 05:55:08 as
	Specificity, free energy and information content in protein-DNA interactions [My Copy] Trends in Biochemical Sciences, Vol. 23, No. 3. (1 March 1998), pp. 109-113. by Gary D. Stormo, Dana S. Fields posted to binding_site_model pwm by brant on 2008-04-24 05:21:09 as along with 3 people vphan erdos zambujo
	Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. [My Copy] Journal of molecular biology, Vol. 193, No. 4. (20 February 1987), pp. 723-750. by O. G. Berg, P. H. von Hippel posted to binding_site_model pwm by brant on 2008-04-24 05:19:32 as along with 9 people and 2 groups mox emptyhb jjray indigoviolet lusk discreteonyxorb cisevol Ema zambujo EisenLab cis-regulatory-evolution
	Core transcriptional regulatory circuitry in human embryonic stem cells. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956. by Laurie A. Boyer, Tong Ihn I. Lee, Megan F. Cole, et al.Sarah E. Johnstone, Stuart S. Levine, Jacob P. Zucker, Matthew G. Guenther, Roshan M. Kumar, Heather L. Murray, Richard G. Jenner, David K. Gifford, Douglas A. Melton, Rudolf Jaenisch, Richard A. Young posted to chip-chip human by brant on 2008-04-24 05:06:45 as along with 13 people rklancer kentsis tardigrade balicea tabu cconboy koller Stew faisalm mikaelhuss tdmckee dquest kengg
	Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs. [My Copy] Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509. by S. Cawley, S. Bekiranov, H. H. Ng, et al.P. Kapranov, E. A. Sekinger, D. Kampa, A. Piccolboni, V. Sementchenko, J. Cheng, A. J. Williams, R. Wheeler, B. Wong, J. Drenkow, M. Yamanaka, S. Patel, S. Brubaker, H. Tammana, G. Helt, K. Struhl, T. R. Gingeras posted to chip-chip human by brant on 2008-04-24 05:06:04 as along with 5 people and 1 group evaf mtagaya kengg olympos bertelsen Plantandetc
	In vivo dissection of the Helicobacter pylori Fur regulatory circuit by genome-wide location analysis. [My Copy] Journal of bacteriology, Vol. 188, No. 13. (July 2006), pp. 4654-4662. by A. Danielli, D. Roncarati, I. Delany, V. Chiarini, R. Rappuoli, V. Scarlato posted to bacteria chip-chip by brant on 2008-04-24 04:52:06 as
	Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 7. (2 April 2002), pp. 4632-4637. by M. T. Laub, S. L. Chen, L. Shapiro, H. H. McAdams posted to bacteria chip-chip by brant on 2008-04-24 04:48:57 as
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to chip-chip yeast by brant on 2008-04-24 04:47:32 as along with 29 people and 8 groups viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab

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mimicry	112
evolution	41
review	26
thesis	23
development	14
enhancer_finding	13
genome_size	13
network	13
chip-chip	12
human	12
transcription	12
enhancer	11
fellowship_proposal_ref	11
heterozygosity	8
mapping	8
association	7
behavior	7
comparative	7
drosophila	7
genetics	7
chromatin	6
mate_preference	6
molecular	6
mouse	6
transgenic	6
binding_site_model	5
expression	5
gwas	5
population	5
qtl	5
quantitative_trait	5
yeast	5
annotation	4
ceratitis	4
cis-trans	4
genomic	4
mammalian	4
modeling	4
morphogen	4
non-coding	4
patterning	4
prediction	4
regulation	4
selection	4
tephritid	4
variation	4
adaptation	3
bacteria	3
binding_site	3
book	3
cis-regulation	3
conservation	3
discovery	3
dna-binding	3
enhancer-promoter_interaction	3
eqtl	3
eve	3
genome_paper	3
microarray	3
peromyscus	3
sequencing	3
smads	3
tools	3
transposons	3
turnover	3
16s-ish	2
1-hybrid	2
binding	2
body_weight	2
burrowing	2
butterfly	2
community	2
conserved	2
cooperation	2
core_promoter	2
diabetes	2
disease	2
evo-devo	2
gene	2
genome	2
groucho	2
heart	2
honeybee	2
hox	2
indel	2
interaction	2
intron	2
language	2
long-range_repressor	2
mesoderm	2
motif	2
neutral	2
noise	2
non-conserved	2
nucleosomes	2
number_of_genes	2
pigmentation	2
plasticity	2
polymorphism	2
protein	2
pwm	2
selective-sweep	2
software	2
solexa	2
stripe	2
structure	2
tissue	2
vertebrate	2
ageing	1
alignment	1
amino-acid	1
aphid	1
arts	1
automated-phenotyping	1
awesome	1
bayesian	1
bcd	1
best-practices	1
bias	1
biodiversity	1
bmp	1
books	1
brain_weight	1
cancer	1
carroll	1
chromosome	1
cis-plus	1
classifier	1
cnv	1
co-evolution	1
colonization	1
commentary	1
compbio	1
complementation	1
complexity	1
constraint	1
cooperativity	1
curcuit	1
deposition	1
detection	1
domestication	1
ecology	1
engineered	1
enhancer-promoter	1
ensembl	1
environmental	1
evolvability	1
expression_domain	1
factor	1
factor_analysis	1
fertility	1
fitness	1
footprinting	1
frogs	1
functional	1
fundulus	1
games	1
gata	1
genes	1
genetic	1
genotype-phenotype	1
gut-microbiome	1
hapmap	1
heredity	1
hexdiff	1
high-resolution	1
high-throughput	1
histone	1
hiv	1
hps	1
hybrid	1
idle_reading	1
immunity	1
insulator	1
integrase	1
interactions	1
interspecies	1
invasion	1
inversions	1
in_vitro	1
journal_club	1
kinase	1
kinship	1
large-scale	1
laws	1
listeria	1
long-range_haplotype	1
mass-spec	1
mcdonald-kreitman	1
mcs	1
memory	1
metabolism	1
metagenomics	1
metazoan	1
microbial	1
microfluidic	1
microscopy	1
model	1
modular	1
molecule	1
mol_evo	1
motif_finding	1
multiplex	1
nested_anova	1
next_generation	1
noncoding	1
non-developmental_gene-reg	1
nuclear-organization	1
p53	1
phastcons	1
phenotype	1
phenotyping	1
phosphroylation	1
phylogeny	1
pigment	1
polyphenism	1
promoter_prediction	1
proteasome	1
punctuated	1
rate	1
rates	1
recombineering	1
reconstruction	1
regulatory	1
repression	1
repressor	1
scaling	1
screen	1
segmentation	1
sepsid	1
sex_chromosome	1
sex-determination	1
sexual_dimorphism	1
single	1
single-molecule	1
site	1
sites	1
snp	1
spacing	1
speciation	1
specificity	1
splice	1
stem_cells	1
stickleback	1
subfunctionalization	1
subnuclear_localization	1
tag_sequencing	1
terminal	1
theory	1
transcriptional	1
tribolium	1
ultraconserved_regions	1
uncertainty	1
urchin	1
varitation	1
visualization	1
whole-genome	1
worm	1
zen	1
zygotic	1

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