brianb's library 892 articles Export

	An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers [My Copy] Mol Cell Proteomics (20 October 2009), M900254-MCP200. by Jeffrey R. Whiteaker, Lei Zhao, Leigh Anderson, Amanda G. Paulovich posted to proteomics plasma mrm antibody by brianb on 2009-11-08 19:55:38 as
	Top-Down Identification of Protein Biomarkers in Bacteria with Unsequenced Genomes [My Copy] Analytical Chemistry, Vol. 0, No. 0. (0000) by Colin Wynne, Catherine Fenselau, Plamen A. Demirev, Nathan Edwards posted to topdown proteomics diganostic by brianb on 2009-11-06 16:22:02 as along with 1 person nedwards
	Protein quantification across hundreds of experimental conditions [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15544-15548. by Zia Khan, Joshua S. Bloom, Benjamin A. Garcia, Mona Singh, Leonid Kruglyak posted to quantitation proteomics by brianb on 2009-11-06 16:21:18 as along with 5 people nedwards bennos tmmurali roys GeeSharpMinor
	Methods for combining peptide intensities to estimate relative protein abundance [My Copy] Bioinformatics (5 November 2009), btp610. by Brian Carrillo, Corey Yanofsky, Sylvie Laboissiere, Robert Nadon, Robert E. Kearney posted to quantitation proteomics by brianb on 2009-11-06 16:21:03 as
	GATE: Software for the Analysis and Visualization of High-Dimensional Time-series Expression Data [My Copy] Bioinformatics (5 November 2009), btp628. by Ben D. MacArthur, Alexander Lachmann, Ihor R. Lemischka, Avi Ma'ayan posted to time-course proteomics gene expression bioinformatics by brianb on 2009-11-06 15:53:56 as along with 1 person ngehlenborg
	BioMart Central Portal--unified access to biological data. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W23-27. by Syed Haider, Benoit Ballester, Damian Smedley, Junjun Zhang, Peter Rice, Arek Kasprzyk posted to repository annotation by brianb on 2009-11-05 17:21:50 as along with 15 people sjcockell n00c stharward VGreiff nuin joergkurtwegner natstreet druvus dullhunk H-Arrietaumn Zephyrus guhjy daforerog neils renatomilani
	Edgetic perturbation models of human inherited disorders [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amelie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to proteomics mapping interaction gene by brianb on 2009-11-03 17:11:02 as along with 3 people tmmurali roys pedrobeltrao
	Emerging miniaturized proteomic technologies to study cell signaling in clinical samples. [My Copy] Science signaling, Vol. 2, No. 93. (2009) by Taranjit S. Gujral, Gavin MacBeath posted to proteomics arrays by brianb on 2009-10-23 17:17:30 as along with 1 person nzm
	STATs in cancer inflammation and immunity: a leading role for STAT3 [My Copy] Nature Reviews Cancer, Vol. 9, No. 11. (01 November 2009), pp. 798-809. by Hua Yu, Drew Pardoll, Richard Jove posted to review network cancer by brianb on 2009-10-23 17:05:01 as
	p53 \|[mdash]\| a Jack of all trades but master of none [My Copy] Nature Reviews Cancer, Vol. 9, No. 11. (24 September 2009), pp. 821-829. by Melissa R. Junttila, Gerard I. Evan posted to review network cancer by brianb on 2009-10-23 17:03:46 as along with 1 person renatomilani
	Proteomics strategy for quantitative protein interaction profiling in cell extracts. [My Copy] Nature methods, Vol. 6, No. 10. (13 October 2009), pp. 741-744. by Kirti Sharma, Christoph Weber, Michaela Bairlein, et al.Zoltán Greff, György Kéri, Jürgen Cox, Jesper V. Olsen, Henrik Daub posted to proteomics mapping interaction by brianb on 2009-10-23 17:02:18 as along with 1 person renatomilani
	Comparative analysis to guide quality improvements in proteomics [My Copy] Nature Methods, Vol. 6, No. 10. (01 October 2009), pp. 717-719. by Matthias Mann posted to proteomics metrics by brianb on 2009-10-23 17:01:40 as
	The PSI semantic validator: a framework to check minimum information about a proteomics experiment compliance of proteomics data [My Copy] PROTEOMICS, Vol. 9999, No. 999A. (2009), NA. by Luisa Montecchi-Palazzi, Samuel Kerrien, Florian Reisinger, et al.Bruno Aranda, Andrew R. Jones, Lennart Martens, Henning Hermjakob posted to proteomics by brianb on 2009-10-21 17:16:24 as along with 1 person sjcockell
	Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues [My Copy] PROTEOMICS, Vol. 9, No. 15. (August 2009), pp. 3815-3823. by Maria F. Addis, Alessandro Tanca, Daniela Pagnozzi, et al.Salvatore Crobu, Giuseppe Fanciulli, Paolo Cossu-Rocca, Sergio Uzzau posted to sample_prep proteomics formaldehyde by brianb on 2009-10-21 17:14:35 as along with 1 person guhjy
	2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues [My Copy] PROTEOMICS, Vol. 9, No. 18. (2009), pp. 4329-4339. by Maria F. Addis, Alessandro Tanca, Daniela Pagnozzi, Stefano Rocca, Sergio Uzzau posted to proteomics formaldehyde electrophoresis by brianb on 2009-10-21 17:14:13 as
	Six orders of magnitude dynamic range in capillary electrophoresis with ultrasensitive laser-induced fluorescence detection. [My Copy] Talanta, Vol. 80, No. 2. (15 December 2009), pp. 744-748. by Colin D. Whitmore, David Essaka, Norman J. Dovichi posted to electrophoresis by brianb on 2009-10-20 18:16:47 as
	Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomic analyses and evaluation by the CPTAC network. [My Copy] Molecular & cellular proteomics : MCP (16 October 2009) by Paul A. Rudnick, Karl R. Clauser, Lisa E. Kilpatrick, et al.Dmitrii V. Tchekhovskoi, Pedatsur Neta, Niksa Blonder, Dean D. Billheimer, Ronald K. Blackman, David M. Bunk, Helene L. Cardasis, Amy-Joan J. Ham, Jacob D. Jaffe, Christopher R. Kinsinger, Mehdi Mesri, Thomas A. Neubert, Birgit Schilling, David L. Tabb, Tony J. Tegeler, Lorenzo Vega-Montoto, Asokan Mulayath Variyath, Mu Wang, Pei Wang, Jeffrey R. Whiteaker, Lisa J. Zimmerman, Steven A. Carr, Susan J. Fisher, Bradford W. Gibson, Amanda G. Paulovich, Fred E. Regnier, Henry Rodriguez posted to proteomics chromatography by brianb on 2009-10-20 18:16:19 as
	Global histone profiling by LC-FTMS after inhibition and knockdown of deacetylases in human cells. [My Copy] Journal of chromatography. B, Analytical technologies in the biomedical and life sciences (1 October 2009) by Mingxi Li, Lihua Jiang, Neil L. Kelleher posted to ptm proteomics by brianb on 2009-10-16 15:21:52 as
	Empirical bayes analysis of quantitative proteomics experiments. [My Copy] PloS one, Vol. 4, No. 10. (14 October 2009), e7454. by Adam A. Margolin, Shao-En E. Ong, Monica Schenone, et al.Robert Gould, Stuart L. Schreiber, Steven A. Carr, Todd R. Golub posted to statistics quantitation proteomics by brianb on 2009-10-16 15:20:56 as along with 2 people and 1 group rdiaz ppgardne Journal picks
	A dual pressure linear ion trap - Orbitrap instrument with very high sequencing speed [My Copy] Mol Cell Proteomics (14 October 2009), M900375-MCP200. by Jesper V. Olsen, Jae C. Schwartz, Jens Griep-Raming, et al.Michael L. Nielsen, Eugen Damoc, Eduard Denisov, Oliver Lange, Philip Remes, Dennis Taylor, Maurizio Splendore, Eloy R. Wouters, Michael Senko, Alexander Makarov, Matthias Mann, Stevan Horning posted to proteomics fragmentation by brianb on 2009-10-16 15:19:50 as
	Protein Quantification in Label-Free LC-MS Experiments [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Timothy Clough, Melissa Key, Ilka Ott, Susanne Ragg, Gunther Schadow, Olga Vitek posted to statistics quantitation proteomics by brianb on 2009-10-15 22:20:38 as
	Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. [My Copy] Nature, Vol. 460, No. 7256. (6 August 2009), pp. 762-765. by Johan Malmström, Martin Beck, Alexander Schmidt, Vinzenz Lange, Eric W. Deutsch, Ruedi Aebersold posted to quantitation proteomics by brianb on 2009-10-15 20:31:22 as along with 4 people sjcockell roys jbhiatt absterga
	Mass spectrometry-based approaches toward absolute quantitative proteomics. [My Copy] Current genomics, Vol. 9, No. 4. (June 2008), pp. 263-274. by Keiji Kito, Takashi Ito posted to review quantitation proteomics by brianb on 2009-10-15 20:27:13 as
	Identification of methods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expression profiling [My Copy] Genomics (04 August 2009) by Lisa Roberts, Jessica Bowers, Kelly Sensinger, Andrew Lisowski, Robert Getts, Mark G. Anderson posted to gene formaldehyde expression by brianb on 2009-10-15 18:01:45 as along with 1 person guhjy
	Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 8. (11 August 2009), pp. 2011-2022. by Samuel L. Volchenboum, Kolbrun Kristjansdottir, Donald Wolfgeher, Stephen J. Kron posted to proteomics fragmentation fdr algorithm by brianb on 2009-10-15 15:53:01 as
	Comprehensive defensin assay for saliva. [My Copy] Analytical chemistry, Vol. 81, No. 2. (15 January 2009), pp. 557-566. by Michael S. Gardner, Megan D. Rowland, Amy Y. Siu, Jonathan L. Bundy, Diane K. Wagener, James L. Stephenson posted to proteomics fluid by brianb on 2009-10-15 15:39:39 as
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution [My Copy] Nature, Vol. 461, No. 7265. (08 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, Rene L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to genomics cancer by brianb on 2009-10-13 18:26:14 as along with 11 people and 2 groups jwfoley stubrown chvlyl giovenko frohike Zephyrus jsuchit mkiyer torfinnnome merpublic djkt Chinnaiyan Lab Journal picks
	Biases in Ion Transmission Through an Electrospray Ionization-Mass Spectrometry Capillary Inlet. [My Copy] Journal of the American Society for Mass Spectrometry (2 September 2009) by Jason S. Page, Ioan Marginean, Erin S. Baker, Ryan T. Kelly, Keqi Tang, Richard D. Smith posted to ionization by brianb on 2009-10-13 18:16:12 as
	Profiling the Glycoforms of the Intact alpha Subunit of Recombinant Human Chorionic Gonadotropin by High-Resolution Capillary Electrophoresis-Mass Spectrometry. [My Copy] Analytical chemistry (9 October 2009) by Dipak Thakur, Tomas Rejtar, Barry L. Karger, et al.Nathaniel J. Washburn, Carlos J. Bosques, Nur S. Gunay, Zachary Shriver, Ganesh Venkataraman posted to proteomics isoform electrophoresis by brianb on 2009-10-13 17:53:50 as
	Perspectives of targeted mass spectrometry for protein biomarker verification. [My Copy] Current opinion in chemical biology (7 October 2009) by Ruth Hüttenhain, Johan Malmström, Paola Picotti, Ruedi Aebersold posted to review quantitation proteomics by brianb on 2009-10-13 17:53:31 as
	Reactome array: forging a link between metabolome and genome. [My Copy] Science (New York, N.Y.), Vol. 326, No. 5950. (9 October 2009), pp. 252-257. by Ana Beloqui, María-Eugenia E. Guazzaroni, Florencio Pazos, et al.José M. Vieites, Marta Godoy, Olga V. Golyshina, Tatyana N. Chernikova, Agnes Waliczek, Rafael Silva-Rocha, Yamal Al-Ramahi, Violetta La Cono, Carmen Mendez, José A. Salas, Roberto Solano, Michail M. Yakimov, Kenneth N. Timmis, Peter N. Golyshin, Manuel Ferrer posted to proteomics metabolomics genomics by brianb on 2009-10-09 15:37:08 as along with 8 people and 1 group kinestetika renatomilani leliavski michaelbarton abhishek_tiwari TRHvidsten ptrobajo gbloeb Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	Systematic comparative protein expression profiling of clear cell renal cell carcinoma: A pilot study based on the separation of tissue specimen by two-dimensional electrophoresis [My Copy] Mol Cell Proteomics (14 September 2009), M900168-MCP200. by Rudolf Lichtenfels, Sven P. Dressler, Monica Zobawa, et al.Christian V. Recktenwald, Angelika Ackermann, Derek Atkins, Michael Kersten, Andrea Hesse, Maria Puttkammer, Friedrich Lottspeich, Barbara Seliger posted to tissue quantitation proteomics electrophoresis by brianb on 2009-10-09 15:26:19 as
	One-Pot Shotgun Quantitative Mass Spectrometry Characterization of Histones [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Mariana D. Plazas-Mayorca, Barry M. Zee, Nicolas L. Young, et al.Ian M. Fingerman, Gary LeRoy, Scott D. Briggs, Benjamin A. Garcia posted to sample_prep ptm proteomics by brianb on 2009-10-09 15:25:29 as
	Statistical lower bounds on protein copy number from fluorescence expression images [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2670-2676. by Lee Zamparo, Theodore J. Perkins posted to tissue quantitation proteomics by brianb on 2009-10-09 15:24:04 as along with 1 person roys
	Absolute abundance for the masses [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 825-826. by Christine Vogel, Edward M. Marcotte posted to quantitation proteomics by brianb on 2009-10-09 15:22:48 as along with 2 people sjcockell oelemento
	Avoiding Nonspecific Interactions in Studies of the Plasma Proteome: Practical Solutions to Prevention of Nonspecific Interactions for Label-Free Detection of Low-Abundance Plasma Proteins [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Joanna L. Richens, Elizabeth A. M. Lunt, Daniel Sanger, Graeme McKenzie, Paul O’Shea posted to sample_prep proteomics plasma by brianb on 2009-10-09 15:21:02 as
	Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Raja Jothi, S. Balaji, Arthur Wuster, et al.Joshua A. Grochow, Jorg Gsponer, Teresa M. Przytycka, L. Aravind, Madan M. Babu posted to network modeling genomics by brianb on 2009-10-09 15:20:14 as along with 12 people ashishanand apocapoc dswan sjcockell zwang fenghezi rdiaz megraw poirel TRHvidsten jjray biomcgary
	Effect of Peptide-to-TiO2 Beads Ratio on Phosphopeptide Enrichment Selectivity [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Qing-run Li, Zhi-bin Ning, Jia-shu Tang, Song Nie, Rong Zeng posted to sample_prep proteomics phosphorylation by brianb on 2009-10-09 15:19:57 as
	An agenda for personalized medicine [My Copy] Nature, Vol. 461, No. 7265. (07 October 2009), pp. 724-726. by Pauline C. Ng, Sarah S. Murray, Samuel Levy, J. Craig Venter posted to opinion genomics by brianb on 2009-10-08 16:32:38 as along with 4 people operon merpublic rdiaz chriswillmott
	Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics [My Copy] PLoS ONE, Vol. 4, No. 10. (6 October 2009), e7310. by Mihaela E. Sardiu, Joshua M. Gilmore, Michael J. Carrozza, et al.Bing Li, Jerry L. Workman, Laurence Florens, Michael P. Washburn posted to quantitation proteomics modeling interaction by brianb on 2009-10-07 17:37:24 as along with 1 person poirel
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to network gene expression diganostic cancer by brianb on 2009-10-07 15:40:18 as along with 3 people bertelsen renatomilani ptrobajo
	CLEAN: CLustering Enrichment ANalysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 July 2009), 234. by Johannes Freudenberg, Vineet Joshi, Zhen Hu, Mario Medvedovic posted to gene expression bioinformatics by brianb on 2009-10-06 20:18:36 as along with 8 people nuin rdiaz dswan guhjy frohike RamuAnandakrishnan barriot renatomilani
	Spectrum fusion: using multiple mass spectra for de novo Peptide sequencing. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (August 2009), pp. 1169-1182. by Ritendra Datta, Marshall Bern posted to proteomics fragmentation by brianb on 2009-10-06 20:17:33 as along with 1 person nuin
	Fast and accurate alignment of multiple protein networks. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (22 August 2009), pp. 989-999. by Maxim Kalaev, Vineet Bafna, Roded Sharan posted to proteomics network modeling by brianb on 2009-10-06 20:16:53 as along with 3 people Balou nuin chica
	Application of Slicing of One-Dimensional Gels with Subsequent Slice-by-Slice Mass Spectrometry for the Proteomic Profiling of Human Liver Cytochromes P450 [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Andrey V. Lisitsa, Natalia A. Petushkova, Herbert Thiele, et al.Sergei A. Moshkovskii, Viktor G. Zgoda, Irina I. Karuzina, Aleksey L. Chernobrovkin, Oleg G. Skipenko, Alexander I. Archakov posted to topdown proteomics isoform by brianb on 2009-10-06 20:14:58 as
	Sensitive multiplexed analysis of kinase activities and activity-based kinase identification [My Copy] Nat Biotech, Vol. 27, No. 10. (04 October 2009), pp. 933-940. by Kazuishi Kubota, Rana Anjum, Yonghao Yu, et al.Ryan C. Kunz, Jannik N. Andersen, Manfred Kraus, Heike Keilhack, Kumiko Nagashima, Stefan Krauss, Cloud Paweletz, Ronald C. Hendrickson, Adam S. Feldman, Chin-Lee Wu, John Rush, Judit Villen, Steven P. Gygi posted to signaling proteomics phosphorylation network by brianb on 2009-10-06 20:02:00 as along with 2 people renatomilani ptrobajo
	Scanning the Cell Surface Proteome of Cancer Cells and Identification of Metastasis-Associated Proteins Using a Subtractive Immunization Strategy [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Nicolaj Rasmussen, Henrik J. Ditzel posted to proteomics cancer antibody by brianb on 2009-10-02 19:11:17 as
	Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling [My Copy] BMC Systems Biology, Vol. 3, No. 1. (28 September 2009), 98. by Dominik Wittmann, Jan Krumsiek, Julio S. Rodriguez, Douglas Lauffenburger, Steffen Klamt, Fabian Theis posted to sysbio signaling quantitation network modeling by brianb on 2009-10-02 19:09:14 as along with 4 people perkeo cmzmasek rdiaz peterhilbers
	RAS Mutations Affect Tumor Necrosis Factor-Induced Apoptosis in Colon Carcinoma Cells via ERK-Modulatory Negative and Positive Feedback Circuits Along with Non-ERK Pathway Effects. [My Copy] Cancer research (29 September 2009) by Pamela K. Kreeger, Roli Mandhana, Shannon K. Alford, Kevin M. Haigis, Douglas A. Lauffenburger posted to signaling network cancer by brianb on 2009-10-02 19:08:18 as
	Combining Tissue Transcriptomics and Urine Metabolomics for Breast Cancer Biomarker Identification [My Copy] Bioinformatics (25 September 2009), btp558. by Hojung Nam, Bong C. Chung, Younghoon Kim, KiYoung Lee, Doheon Lee posted to metabolomics gene expression cancer by brianb on 2009-09-30 01:46:08 as along with 1 person neils

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proteomics	655
electrophoresis	141
quantitation	140
bioinformatics	136
interaction	77
disease	73
cancer	68
diganostic	60
chromatography	58
phosphorylation	55
network	53
expression	41
modeling	41
fdr	40
gene	39
formaldehyde	37
tissue	36
statistics	33
genomics	31
pathology	31
ptm	31
signaling	31
fragmentation	30
antibody	22
arrays	21
plasma	21
review	20
sample_prep	19
fluid	18
topdown	16
algorithm	15
lcm	15
bias	14
repository	13
silac	13
isoform	9
sysbio	9
mapping	8
sle	8
xlink	8
itraq	7
localization	7
dige	6
diabetes	5
prokaryote	5
annotation	4
imaging	4
ionization	4
time-course	4
apoptosis	3
ar	3
csc	3
food	3
glycosylation	3
hdx	3
metabolomics	3
population	3
rnai	3
structure	3
autophagy	2
chip	2
metrics	2
mrm	2
noise	2
snp	2
splicing	2
subtilis	2
antimicrobial	1
circulating	1
db	1
faims	1
fret	1
immunology	1
matlab	1
mirna	1
opinion	1
spr	1
standard	1
toxicity	1
y2h	1

brianb's library 892 articles Export

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