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	Comparative analysis of OFFGel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Bruno Manadas, Jane A. English, Kieran J. Wynne, David R. Cotter, Michael J. Dunn posted to proteomics electrophoresis chromatography by brianb on 2009-11-12 18:14:15 as
	Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomic analyses and evaluation by the CPTAC network. [My Copy] Molecular & cellular proteomics : MCP (16 October 2009) by Paul A. Rudnick, Karl R. Clauser, Lisa E. Kilpatrick, et al.Dmitrii V. Tchekhovskoi, Pedatsur Neta, Niksa Blonder, Dean D. Billheimer, Ronald K. Blackman, David M. Bunk, Helene L. Cardasis, Amy-Joan J. Ham, Jacob D. Jaffe, Christopher R. Kinsinger, Mehdi Mesri, Thomas A. Neubert, Birgit Schilling, David L. Tabb, Tony J. Tegeler, Lorenzo Vega-Montoto, Asokan Mulayath Variyath, Mu Wang, Pei Wang, Jeffrey R. Whiteaker, Lisa J. Zimmerman, Steven A. Carr, Susan J. Fisher, Bradford W. Gibson, Amanda G. Paulovich, Fred E. Regnier, Henry Rodriguez posted to proteomics chromatography by brianb on 2009-10-20 18:16:19 as
	A Robust Two-Dimensional Separation for Top-Down Tandem Mass Spectrometry of the Low-Mass Proteome [My Copy] Journal of the American Society for Mass Spectrometry (12 August 2009) by Ji E. Lee, John F. Kellie, John C. Tran, et al.Jeremiah D. Tipton, Adam D. Catherman, Haylee M. Thomas, Dorothy R. Ahlf, Kenneth R. Durbin, Adaikkalam Vellaichamy, Ioanna Ntai posted to topdown proteomics electrophoresis chromatography by brianb on 2009-09-16 03:32:28 as
	Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 1. (January 2009), pp. 190-200. by Nadia Taouatas, Maarten F. Altelaar, Madalina M. Drugan, Andreas O. Helbig, Shabaz Mohammed, Albert J. Heck posted to ptm proteomics fragmentation chromatography by brianb on 2009-09-14 21:32:45 as
	High Throughput Characterization of Combinatorial Histone Codes [My Copy] Mol Cell Proteomics, Vol. 8, No. 10. (1 October 2009), pp. 2266-2284. by Nicolas L. Young, Peter A. DiMaggio, Mariana D. Plazas-Mayorca, Richard C. Baliban, Christodoulos A. Floudas, Benjamin A. Garcia posted to proteomics fragmentation chromatography by brianb on 2009-09-11 01:48:30 as
	Acid Elution and One-Dimensional Shotgun Analysis on an Orbitrap Mass Spectrometer: An Application to Drug Affinity Chromatography [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Nora V. Fernbach, Melanie Planyavsky, André Müller, et al.Florian P. Breitwieser, Jacques Colinge, Uwe Rix, Keiryn L. Bennett posted to proteomics chromatography antibody by brianb on 2009-09-03 21:56:27 as
	Peptide Separations by On-Line MudPIT Compared to Isoelectric Focusing in an Off-Gel Format: Application to a Membrane-Enriched Fraction from C2C12 Mouse Skeletal Muscle Cells [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Sarah Elschenbroich, Vladimir Ignatchenko, Parveen Sharma, Gerold Schmitt-Ulms, Anthony O. Gramolini, Thomas Kislinger posted to proteomics electrophoresis chromatography by brianb on 2009-08-28 19:06:21 as
	Off-Line Two-Dimensional Liquid Chromatography with Maximized Sample Loading to Reversed-Phase Liquid Chromatography-Electrospray Ionization Tandem Mass Spectrometry for Shotgun Proteome Analysis [My Copy] Analytical Chemistry, Vol. 81, No. 3. (1 February 2009), pp. 1049-1060. by Nan Wang, Chuanhui Xie, J. Bryce Young, Liang Li posted to sample_prep proteomics chromatography by brianb on 2009-08-21 19:52:54 as along with 1 person nedwards
	Analysis of RP-HPLC Loading Conditions for Maximizing Peptide Identifications in Shotgun Proteomics [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Amelia Peterson, Laura Hohmann, Li Huang, Bong Kim, Jimmy K. Eng, Daniel B. Martin posted to chromatography proteomics sample_prep by brianb on 2009-07-15 14:31:19 as along with 1 person frankfli
	Effect of Dynamic Exclusion Duration on Spectral Count Based Quantitative Proteomics. [My Copy] Analytical chemistry (8 July 2009) by Ying Zhang, Zhihui Wen, Michael P. Washburn, Laurence Florens posted to chromatography proteomics quantitation by brianb on 2009-07-13 03:07:55 as
	Assessment of acetone as an alternative to acetonitrile in peptide analysis by liquid chromatography/mass spectrometry [My Copy] Rapid Communications in Mass Spectrometry, Vol. 23, No. 14. (2009), pp. 2139-2145. by Ria Fritz, Wolfgang Ruth, Udo Kragl posted to chromatography proteomics by brianb on 2009-07-13 01:09:37 as along with 1 person rjazwiec
	Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments. [My Copy] BioData mining, Vol. 2, No. 1. (2009) by O. Schulz-Trieglaff, E. Machtejevas, K. Reinert, H. Schlüter, J. Thiemann, K. Unger posted to bioinformatics chromatography proteomics by brianb on 2009-07-03 15:18:32 as
	Improving Peptide Identification in Proteome Analysis by a Two-Dimensional Retention Time Filtering Approach [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Nico Pfeifer, Andreas Leinenbach, Christian G. Huber, Oliver Kohlbacher posted to bioinformatics chromatography proteomics by brianb on 2009-07-02 21:06:33 as
	Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma [My Copy] Nat Biotech, Vol. 27, No. 7. (28 July 2009), pp. 633-641. by Terri A. Addona, Susan E. Abbatiello, Birgit Schilling, et al.Steven J. Skates, D. R. Mani, David M. Bunk, Clifford H. Spiegelman, Lisa J. Zimmerman, Amy-Joan L. Ham, Hasmik Keshishian, Steven C. Hall, Simon Allen, Ronald K. Blackman, Christoph H. Borchers, Charles Buck, Helene L. Cardasis, Michael P. Cusack, Nathan G. Dodder, Bradford W. Gibson, Jason M. Held, Tara Hiltke, Angela Jackson, Eric B. Johansen, Christopher R. Kinsinger, Jing Li, Mehdi Mesri, Thomas A. Neubert, Richard K. Niles, Trenton C. Pulsipher, David Ransohoff, Henry Rodriguez, Paul A. Rudnick, Derek Smith, David L. Tabb, Tony J. Tegeler, Asokan M. Variyath, Lorenzo J. Vega-Montoto, Asa Wahlander, Sofia Waldemarson, Mu Wang, Jeffrey R. Whiteaker, Lei Zhao, N. Leigh Anderson, Susan J. Fisher, Daniel C. Liebler, Amanda G. Paulovich, Fred E. Regnier, Paul Tempst, Steven A. Carr posted to chromatography proteomics quantitation by brianb on 2009-06-30 14:54:45 as along with 2 people guhjy nuin
	Analysis of Samples Stored as Individual Plugs in a Capillary by Electrospray Ionization Mass Spectrometry. [My Copy] Analytical chemistry (25 June 2009) by Jian Pei, Qiang Li, Mike S. Lee, Gary A. Valaskovic, Robert T. Kennedy posted to chromatography proteomics by brianb on 2009-06-30 03:56:46 as
	Comparison of two label-free global quantitation methods, APEX and 2D gel electrophoresis, applied to the Shigella dysenteriae proteome [My Copy] Proteome Science, Vol. 7, No. 1. (2009), 22. by Srilatha Kuntumalla, John Braisted, Shih T. Huang, et al.Prashanth Parmar, David Clark, Hamid Alami, Quanshun Zhang, Arthur D. Rolfe, Saul Tzipori, Robert Fleischmann, Scott Peterson, Rembert Pieper posted to chromatography electrophoresis proteomics quantitation by brianb on 2009-06-29 19:57:09 as
	Automated diagnosis of LC-MS/MS performance. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 10. (15 May 2009), pp. 1341-1343. by H. Xu, M. A. Freitas posted to bias chromatography proteomics by brianb on 2009-05-27 15:36:46 as along with 1 person nuin
	apLCMS - Adaptive Processing of High-Resolution LC/MS Data. [My Copy] Bioinformatics (Oxford, England) (4 May 2009) by Tianwei Yu posted to bioinformatics chromatography proteomics quantitation by brianb on 2009-05-27 15:34:20 as along with 1 person nuin
	Orthogonal Separation Techniques for the Characterization of the Yeast Nuclear Proteome [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Sharon Gauci, Liesbeth M. Veenhoff, Albert J. Heck, Jeroen Krijgsveld posted to chromatography electrophoresis proteomics sample_prep by brianb on 2009-05-20 22:18:08 as
	Retention Time Alignment Algorithms for LC/MS Data must consider Nonlinear Shifts. [My Copy] Bioinformatics (Oxford, England) (28 January 2009) by Katharina Podwojski, Arno Fritsch, Daniel C C. Chamrad, et al.Wolfgang Paul, Barbara Sitek, Petra Mutzel, Christian Stephan, Helmut E E. Meyer, Wolfgang Urfer, Katja Ickstadt, Jörg Rahnenführer posted to algorithm chromatography proteomics by brianb on 2009-04-20 17:12:44 as along with 3 people m509396 nuin guhjy
	Capillary separations enabling tissue proteomics-based biomarker discovery. [My Copy] Electrophoresis, Vol. 27, No. 18. (September 2006), pp. 3523-3532. by T. Guo, C. S. Lee, W. Wang, D. L. DeVoe, B. M. Balgley posted to chromatography electrophoresis proteomics review by brianb on 2009-04-20 15:25:31 as
	Effects of chromatography conditions on intact protein separations for top-down proteomics. [My Copy] Journal of chromatography. A, Vol. 1073, No. 1-2. (6 May 2005), pp. 35-41. by Y. Wang, B. M. Balgley, P. A. Rudnick, C. S. Lee posted to chromatography proteomics topdown by brianb on 2009-04-20 15:20:15 as
	Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses. [My Copy] Analytical chemistry, Vol. 75, No. 5. (1 March 2003), pp. 1039-1048. by K. Petritis, L. J. Kangas, P. L. Ferguson, et al.G. A. Anderson, L. Pasa-Tolić, M. S. Lipton, K. J. Auberry, E. F. Strittmatter, Y. Shen, R. Zhao, R. D. Smith posted to bioinformatics chromatography proteomics by brianb on 2009-03-20 15:55:33 as
	Proteomic analysis using 2-D liquid separations of intact proteins from whole-cell lysates. [My Copy] Current protocols in protein science / editorial board, John E. Coligan ... [et al.], Vol. Chapter 23 (February 2004) by K. Zhu, F. Yan, K. A. O'Neil, et al.R. Hamler, D. M. Lubman, L. Lin, T. J. Barder posted to chromatography electrophoresis proteomics by brianb on 2009-03-20 15:55:05 as
	SISCAPA peptide enrichment on magnetic beads using an inline beadtrap device [My Copy] Mol Cell Proteomics (4 February 2009), M800446-MCP200. by Leigh N. Anderson, Angela Jackson, Derek Smith, Darryl Hardie, Christoph Borchers, Terry W. Pearson posted to chromatography plasma proteomics by brianb on 2009-03-20 15:49:14 as
	Capillary isoelectric focusing-based multidimensional concentration/separation platform for proteome analysis. [My Copy] Analytical chemistry, Vol. 75, No. 13. (1 July 2003), pp. 3145-3152. by J. Chen, B. M. Balgley, D. L. DeVoe, C. S. Lee posted to chromatography electrophoresis proteomics by brianb on 2009-03-16 20:47:37 as
	Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum [My Copy] ELECTROPHORESIS, Vol. 9999, No. 9999. (2009), NA. by Martin Gilar, Petra Olivova, Asish B. Chakraborty, Aleksander Jaworski, Scott J. Geromanos, John C. Gebler posted to chromatography plasma proteomics by brianb on 2009-03-13 17:28:25 as
	Automated metal-free multiple-column nanoLC for improved phosphopeptide analysis sensitivity and throughput. [My Copy] Journal of chromatography. B, Analytical technologies in the biomedical and life sciences (6 January 2009) by Rui Zhao, Shi-Jian J. Ding, Yufeng Shen, et al.David G G. Camp Ii, Eric A A. Livesay, Harold Udseth, Richard D D. Smith posted to chromatography phosphorylation proteomics by brianb on 2009-02-18 17:37:45 as
	Selection of the Optimum Electrospray Voltage for Gradient Elution LC-MS Measurements. [My Copy] Journal of the American Society for Mass Spectrometry (13 December 2008) by Ioan Marginean, Ryan T T. Kelly, Ronald J J. Moore, et al.David C C. Prior, Brian L L. Lamarche, Keqi Tang, Richard D D. Smith posted to chromatography ionization by brianb on 2009-02-07 17:34:40 as
	Automated 2D Peptide Separation on a 1D Nano-LC-MS System [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Paul Taylor, Peter A. Nielsen, Morten B. Trelle, et al.Ole B. Hørning, Michael B. Andersen, Ole Vorm, Michael F. Moran, Thomas Kislinger posted to chromatography proteomics by brianb on 2009-02-04 22:34:04 as
	A decade of HPLC-MS/MS in the routine clinical laboratory--goals for further developments. [My Copy] Clinical biochemistry, Vol. 41, No. 9. (June 2008), pp. 649-662. by M. Vogeser, C. Seger posted to chromatography diganostic review by brianb on 2009-02-04 18:02:39 as along with 1 person guhjy
	InSilicoSpectro: an open-source proteomics library. [My Copy] Journal of proteome research, Vol. 5, No. 3. (March 2006), pp. 619-624. by J. Colinge, A. Masselot, P. Carbonell, R. D. Appel posted to bioinformatics chromatography modeling proteomics by brianb on 2009-01-31 22:45:28 as along with 1 person pablocarb
	Stable Isotope Dilution Multidimensional Liquid Chromatography-Tandem Mass Spectrometry for Pancreatic Cancer Serum Biomarker Discovery [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Kenneth H. Yu, Colin G. Barry, David Austin, et al.Christine M. Busch, Vineet Sangar, Anil K. Rustgi, Ian A. Blair posted to chromatography electrophoresis proteomics silac by brianb on 2009-01-20 22:45:24 as
	High-Throughput Liquid−Liquid Fractionation of Multiple Protein Post-Translational Modifications [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by James H. Deford, Jonathan E. Nuss, James Amaning, Robert D. English, Don Tjernlund, John Papaconstantinou posted to chromatography proteomics ptm by brianb on 2008-12-23 14:55:10 as
	Overcoming Matrix Effects in Liquid Chromatography−Mass Spectrometry [My Copy] Anal. Chem. (30 October 2008) by Achille Cappiello, Giorgio Famiglini, Pierangela Palma, Elisabetta Pierini, Veronica Termopoli, Helga Trufelli posted to chromatography by brianb on 2008-10-30 19:02:49 as
	Evaluation of Strong Cation Exchange versus Isoelectric Focusing of Peptides for Multidimensional Liquid Chromatography-Tandem Mass Spectrometry [My Copy] J. Proteome Res. (22 October 2008) by Robbert J. Slebos, Jonathan W. Brock, Nancy F. Winters, et al.Sarah R. Stuart, Misti A. Martinez, Ming Li, Mathew C. Chambers, Lisa J. Zimmerman, Amy J. Ham, David L. Tabb, Daniel C. Liebler posted to chromatography electrophoresis proteomics tissue by brianb on 2008-10-22 18:07:00 as along with 1 person guhjy
	Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane Proteins in Single LC-MS Runs [My Copy] J. Proteome Res. (8 October 2008) by Nagarjuna Nagaraj, Aiping Lu, Matthias Mann, Jacek R. Wiśniewski posted to chromatography proteomics by brianb on 2008-10-09 03:10:02 as along with 1 person guhjy
	Dependence of Effective Peak Capacity in Comprehensive Two-Dimensional Separations on the Distribution of Peak Capacity between the Two Dimensions [My Copy] Anal. Chem. (8 October 2008) by Joe M. Davis, Dwight R. Stoll, Peter W. Carr posted to chromatography proteomics by brianb on 2008-10-09 01:45:39 as
	Versatile Online−Offline Engine for Automated Acquisition of High-Resolution Tandem Mass Spectra [My Copy] Analytical Chemistry, Vol. 80, No. 21. (1 November 2008), pp. 8055-8063. by Craig D. Wenger, Michael T. Boyne, Jonathan T. Ferguson, Dana E. Robinson, Neil L. Kelleher posted to chromatography proteomics by brianb on 2008-10-09 01:44:12 as along with 1 person nedwards
	The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry. [My Copy] Nature protocols, Vol. 3, No. 10. (2008), pp. 1630-1638. by J. Villén, S. P. Gygi posted to chromatography phosphorylation proteomics by brianb on 2008-10-05 20:02:17 as
	A Comparative Study of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) versus SCX-IMAC-Based Methods for Phosphopeptide Isolation/Enrichment [My Copy] J. Proteome Res. (2 October 2008) by Chee S. Gan, Tiannan Guo, Huoming Zhang, Sai K. Lim, Siu K. Sze posted to chromatography phosphorylation proteomics by brianb on 2008-10-02 14:19:56 as
	Detection of co-eluted peptides using database search methods [My Copy] Biology Direct, Vol. 3 (02 July 2008), 27. by Gelio Alves, Aleksey Y. Ogurtsov, Siwei Kwok, et al.Wells W. Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:23:58 as
	A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time [My Copy] BMC Bioinformatics, Vol. 9 (19 August 2008), 347. by Hua Xu, Lanhao Yang, Michael A. Freitas posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:19:45 as along with 1 person nuin
	A simplified multidimensional approach for analysis of complex biological samples: on-line LC-CE-MS [My Copy] Analyst, Vol. 131, No. 7. (2006), pp. 791-798. by Sara K. Bergstrom, Andreas P. Dahlin, Margareta Ramstrom, Marit Andersson, Karin E. Markides, Jonas Bergquist posted to chromatography electrophoresis proteomics by brianb on 2008-08-13 22:58:19 as along with 1 person labkungen
	Assessing the Dynamic Range and Peak Capacity of Nanoflow LC−FAIMS−MS on an Ion Trap Mass Spectrometer for Proteomics [My Copy] Anal. Chem. (12 August 2008) by Jesse D. Canterbury, Xianhua Yi, Michael R. Hoopmann, Michael J. Maccoss posted to chromatography faims proteomics by brianb on 2008-08-13 22:51:23 as
	Practical Implementation of 2D HPLC Scheme with Accurate Peptide Retention Prediction in Both Dimensions for High-Throughput Bottom-Up Proteomics [My Copy] Anal. Chem. (8 August 2008) by Ravi C. Dwivedi, Vic Spicer, Michael Harder, et al.Mihaela Antonovici, Werner Ens, Kenneth G. Standing, John A. Wilkins, Oleg V. Krokhin posted to chromatography proteomics by brianb on 2008-08-08 14:48:15 as
	Comparison of Two-Dimensional Fractionation Techniques for Shotgun Proteomics [My Copy] Anal. Chem. (5 August 2008) by James A. Dowell, Dustin C. Frost, Jiang Zhang, Lingjun Li posted to chromatography proteomics by brianb on 2008-08-06 05:01:26 as
	Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs [My Copy] Nature Biotechnology, Vol. 25, No. 6., pp. 651-655. by Jan Eriksson, David Fenyö posted to chromatography modeling proteomics by brianb on 2008-07-30 15:56:00 as along with 3 people guhjy grahamc nedwards
	Automated SPR-LC−MS/MS System for Protein Interaction Analysis [My Copy] J. Proteome Res. (25 July 2008) by Toshiya Hayano, Yoshio Yamauchi, Kazunobu Asano, et al.Teruko Tsujimura, Setsuko Hashimoto, Toshiaki Isobe, Nobuhiro Takahashi posted to chromatography interaction proteomics spr by brianb on 2008-07-26 06:14:46 as
	Surface Area of Reversed-Phase HPLC Columns [My Copy] Anal. Chem. (23 July 2008) by A. Giaquinto, Zhaoxia Liu, Andrew Bach, Yuri Kazakevich posted to chromatography proteomics by brianb on 2008-07-23 16:17:16 as

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proteomics	667
quantitation	142
electrophoresis	142
bioinformatics	137
interaction	78
disease	73
cancer	70
diganostic	60
chromatography	59
phosphorylation	55
network	55
fdr	43
expression	42
modeling	41
gene	40
formaldehyde	37
tissue	36
genomics	34
statistics	33
ptm	33
pathology	32
signaling	31
fragmentation	31
plasma	22
antibody	22
arrays	21
review	20
fluid	19
sample_prep	19
topdown	16
repository	16
algorithm	15
bias	15
lcm	15
silac	13
mapping	10
sysbio	10
isoform	9
xlink	9
sle	8
itraq	8
dige	7
localization	7
diabetes	5
prokaryote	5
ionization	4
imaging	4
time-course	4
annotation	4
rnai	3
csc	3
ar	3
metabolomics	3
glycosylation	3
food	3
standard	3
apoptosis	3
structure	3
population	3
hdx	3
noise	2
mrm	2
chip	2
autophagy	2
metrics	2
splicing	2
snp	2
subtilis	2
y2h	1
mirna	1
immunology	1
spr	1
db	1
toxicity	1
faims	1
fret	1
antimicrobial	1
matlab	1
opinion	1
circulating	1

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