brianb's fdr [43 articles] Export

Recent papers added to brianb's library classified by the tag fdr. You can also see everyone's fdr.

	Local false discovery rate facilitates comparison of different microarray experiments [My Copy] Nucl. Acids Res. (13 October 2009), gkp813. by Wan-Jen Hong, Robert Tibshirani, Gilbert Chu posted to gene fdr expression by brianb on 2009-12-01 02:44:16 as along with 1 person nuin
	Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics. [My Copy] Journal of proteome research (16 November 2009) by Henry Lam, Eric Deutsch, Ruedi Aebersold posted to proteomics fdr by brianb on 2009-11-18 19:55:16 as
	MS/MS/MS Reveals False Positive Identification of Histone Serine Methylation [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Junmei Zhang, Yue Chen, Zhihong Zhang, Gang Xing, Joanna Wysocka, Yingming Zhao posted to ptm proteomics fragmentation fdr bias by brianb on 2009-11-17 21:40:21 as
	Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 8. (11 August 2009), pp. 2011-2022. by Samuel L. Volchenboum, Kolbrun Kristjansdottir, Donald Wolfgeher, Stephen J. Kron posted to proteomics fragmentation fdr algorithm by brianb on 2009-10-15 15:53:01 as
	Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2174-2180. by Xiaowen Liu, Yonghua Han, Denis Yuen, Bin Ma posted to proteomics fdr by brianb on 2009-08-28 19:04:09 as along with 1 person nuin
	Network-assisted protein identification and data interpretation in shotgun proteomics [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Jing Li, Lisa J. Zimmerman, Byung-Hoon Park, David L. Tabb, Daniel C. Liebler, Bing Zhang posted to proteomics network fdr by brianb on 2009-08-20 15:59:44 as along with 4 people ptrobajo reyez danmaclean biomcgary
	False Discovery Rates of Protein Identifications: A Strike against the Two-Peptide Rule [My Copy] Journal of Proteome Research, Vol. 8, No. 9. (4 September 2009), pp. 4173-4181. by Nitin Gupta, Pavel A. Pevzner posted to proteomics fdr by brianb on 2009-08-17 17:55:23 as along with 3 people gjuggler nedwards carlosjavierna
	False Discovery Rates and Related Statistical Concepts in Mass Spectrometry-Based Proteomics [My Copy] Journal of Proteome Research, Vol. 7, No. 1. (1 January 2008), pp. 47-50. by Hyungwon Choi, Alexey I. Nesvizhskii posted to proteomics fdr by brianb on 2009-08-17 02:55:41 as along with 4 people shikin nedwards guhjy robert
	Comparison of Novel Decoy Database Designs for Optimizing Protein Identification Searches Using ABRF sPRG2006 Standard MS/MS Data Sets [My Copy] Journal of Proteome Research, Vol. 8, No. 4. (3 April 2009), pp. 1782-1791. by Luca Bianco, Jennifer A. Mead, Conrad Bessant posted to proteomics fdr by brianb on 2009-08-17 02:55:12 as along with 1 person nedwards
	A Refined Method To Calculate False Discovery Rates for Peptide Identification Using Decoy Databases [My Copy] Journal of Proteome Research, Vol. 8, No. 4. (3 April 2009), pp. 1792-1796. by Pedro Navarro, Jesús Vázquez posted to proteomics fdr by brianb on 2009-08-17 02:54:25 as along with 1 person nedwards
	On the estimation of false positives in peptide identifications using decoy search strategy [My Copy] PROTEOMICS, Vol. 9, No. 1. (2009), pp. 194-204. by Changyu Shen, Quanhu Sheng, Jie Dai, Yixue Li, Rong Zeng, Haixu Tang posted to proteomics fdr by brianb on 2009-08-17 02:54:07 as along with 1 person nedwards
	Integrated platform for manual and high-throughput statistical validation of tandem mass spectra [My Copy] PROTEOMICS, Vol. 9, No. 11. (June 2009), pp. 3115-3125. by Kebing Yu, Anthony Sabelli, Lisa DeKeukelaere, et al.Richard Park, Suzanne Sindi, Constantine A. Gatsonis, Arthur Salomon posted to fdr fragmentation proteomics statistics by brianb on 2009-07-31 20:35:09 as along with 1 person Ronald80
	Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines. [My Copy] Proteomics, Vol. 9, No. 5. (March 2009), pp. 1220-1229. by A. R. Jones, J. A. Siepen, S. J. Hubbard, N. W. Paton posted to fdr proteomics by brianb on 2009-07-20 16:51:01 as along with 1 person rjazwiec
	Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry [My Copy] Mol Cell Proteomics, Vol. 8, No. 11. (1 November 2009), pp. 2405-2417. by Lukas Reiter, Manfred Claassen, Sabine P. Schrimpf, et al.Marko Jovanovic, Alexander Schmidt, Joachim M. Buhmann, Michael O. Hengartner, Ruedi Aebersold posted to bioinformatics fdr proteomics by brianb on 2009-07-19 03:18:55 as along with 1 person sjcockell
	IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering [My Copy] Journal of Proteome Research, Vol. 8, No. 8. (7 August 2009), pp. 3872-3881. by Ze-Qiang Ma, Surendra Dasari, Matthew C. Chambers, et al.Michael D. Litton, Scott M. Sobecki, Lisa J. Zimmerman, Patrick J. Halvey, Birgit Schilling, Penelope M. Drake, Bradford W. Gibson, David L. Tabb posted to fdr proteomics by brianb on 2009-06-27 14:59:14 as along with 1 person and 1 group whitead Jiang Research Group
	Computational principles of determining and improving mass precision and accuracy for proteome measurements in an orbitrap [My Copy] Journal of the American Society for Mass Spectrometry (20 May 2009) by Jürgen Cox, Matthias Mann posted to fdr proteomics by brianb on 2009-06-27 14:58:51 as
	FDR made easy in differential feature discovery and correlation analyses [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1461-1462. by Xuefeng B. Ling, Harvey Cohen, Joseph Jin, Irwin Lau, James Schilling posted to fdr proteomics by brianb on 2009-05-27 15:32:25 as along with 7 people heliopais jfr rdiaz fishtank nuin idonaldson guhjy
	Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy [My Copy] Mol Cell Proteomics, Vol. 6, No. 9. (1 September 2007), pp. 1599-1608. by Brian M. Balgley, Tom Laudeman, Li Yang, Tao Song, Cheng S. Lee posted to bioinformatics fdr proteomics by brianb on 2009-04-20 15:29:39 as along with 2 people robert nedwards
	Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation. [My Copy] Journal of proteome research, Vol. 4, No. 4. (g 2005), pp. 1353-1360. by P. A. Rudnick, Y. Wang, E. Evans, C. S. Lee, B. M. Balgley posted to bioinformatics fdr proteomics by brianb on 2009-04-20 15:20:54 as
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted to fdr statistics by brianb on 2009-04-03 17:44:44 as along with 39 people and 4 groups arider1 ctacmo abrentnall jperkins CulCog jlorent zufar bertelsen Zephyrus fisherp michaelbarton dakelley lwaldron polivares ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos rschulz dragonrez isimpson vertikalist Biostatistics Bioinformatics Regulomics_UCHSC BTS-PT-AS-CS
	General framework for developing and evaluating database scoring algorithms using the TANDEM search engine [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2830-2832. by Maclean, Brendan, Eng, et al.K. Jimmy, Beavis, C. Ronald, Mcintosh, Martin posted to bioinformatics fdr proteomics by brianb on 2009-04-01 17:05:13 as
	Bayesian Nonparametric Model for the Validation of Peptide Identification in Shotgun Proteomics [My Copy] Mol Cell Proteomics, Vol. 8, No. 3. (1 March 2009), pp. 547-557. by Jiyang Zhang, Jie Ma, Lei Dou, et al.Songfeng Wu, Xiaohong Qian, Hongwei Xie, Yunping Zhu, Fuchu He posted to bioinformatics fdr proteomics by brianb on 2009-03-20 15:48:07 as
	MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. [My Copy] Nature biotechnology, Vol. 26, No. 12. (30 December 2008), pp. 1367-1372. by Jürgen Cox, Matthias Mann posted to bioinformatics fdr proteomics quantitation by brianb on 2008-11-26 14:39:01 as along with 4 people and 1 group yeastyboy xingxu Yanno guhjy Drug-Design
	Significance analysis of spectral count data in label-free shotgun proteomics. [My Copy] Molecular & cellular proteomics : MCP (20 July 2008) by Hyungwon Choi, Damian Fermin, Alexey I I. Nesvizhskii posted to bioinformatics fdr proteomics statistics by brianb on 2008-11-18 23:40:52 as along with 3 people ethkim mpitman guhjy
	Peptide Sequence Confidence in Accurate Mass and Time Analysis and Its Use in Complex Proteomics Experiments [My Copy] J. Proteome Res. (28 October 2008) by Damon May, Yan Liu, Wendy Law, et al.Matt Fitzgibbon, Hong Wang, Samir Hanash, Martin Mcintosh posted to bioinformatics fdr by brianb on 2008-10-30 19:07:19 as along with 2 people nedwards neils
	Adaptive Discriminant Function Analysis and Reranking of MS/MS Database Search Results for Improved Peptide Identification in Shotgun Proteomics [My Copy] J. Proteome Res. (13 September 2008) by Ying Ding, Hyungwon Choi, Alexey I. Nesvizhskii posted to bioinformatics fdr proteomics by brianb on 2008-09-14 00:35:12 as along with 2 people mpitman guhjy
	Sequential Interval Motif Search: Unrestricted Database Surveys of Global MS/MS Data Sets for Detection of Putative Post-Translational Modifications [My Copy] Anal. Chem. (13 September 2008) by Jian Liu, Alexandre Erassov, Patrick Halina, et al.Myra Canete, Nguyen D. Vo, Clement Chung, Gerard Cagney, Alexandr Ignatchenko, Vincent Fong, Andrew Emili posted to fdr proteomics ptm by brianb on 2008-09-14 00:33:57 as
	A Fast SEQUEST Cross Correlation Algorithm [My Copy] J. Proteome Res. (6 September 2008) by Jimmy K. Eng, Bernd Fischer, Jonas Grossmann, Michael J. Maccoss posted to bioinformatics fdr proteomics by brianb on 2008-09-06 14:57:36 as along with 3 people alexgeorgiou fishtank nedwards
	Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses [My Copy] PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2791-2797. by Alexander Scherl, Yihsuan S. Tsai, Scott A. Shaffer, David R. Goodlett posted to bioinformatics fdr proteomics by brianb on 2008-08-29 01:13:48 as along with 2 people guhjy nedwards
	Calibrating E-values for MS2 database search methods [My Copy] Biology Direct, Vol. 2 (05 November 2007), 26. by Gelio Alves, Aleksey Y. Ogurtsov, Wells W. Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu posted to bioinformatics fdr proteomics by brianb on 2008-08-27 23:31:08 as along with 1 person nedwards
	Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 5. (1 May 2008), pp. 962-970. by M. Brosch, S. Swamy, T. Hubbard, J. Choudhary posted to bioinformatics fdr proteomics by brianb on 2008-08-27 23:30:05 as along with 4 people timhubbard mdharsee nedwards olberd
	Detection of co-eluted peptides using database search methods [My Copy] Biology Direct, Vol. 3 (02 July 2008), 27. by Gelio Alves, Aleksey Y. Ogurtsov, Siwei Kwok, et al.Wells W. Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:23:58 as
	A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time [My Copy] BMC Bioinformatics, Vol. 9 (19 August 2008), 347. by Hua Xu, Lanhao Yang, Michael A. Freitas posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:19:45 as along with 1 person nuin
	Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches [My Copy] J. Proteome Res. (14 August 2008) by Wilfred H. Tang, Ignat V. Shilov, Sean L. Seymour posted to fdr proteomics by brianb on 2008-08-14 15:44:00 as along with 1 person nedwards
	Cleaning of raw peptide MS/MS spectra: improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise. [My Copy] Proteomics, Vol. 6, No. 19. (October 2006), pp. 5117-5131. by N. Mujezinovic, G. Raidl, J. R. Hutchins, J. M. Peters, K. Mechtler, F. Eisenhaber posted to bioinformatics fdr proteomics by brianb on 2008-07-23 21:21:42 as along with 1 person nedwards
	Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases [My Copy] Journal of Proteome Research, Vol. 7, No. 8. (1 August 2008), pp. 3354-3363. by Sangtae Kim, Nitin Gupta, Pavel A. Pevzner posted to bioinformatics fdr proteomics by brianb on 2008-07-03 16:08:04 as along with 4 people stefanorb nedwards simonhubbard guhjy
	Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis [My Copy] J. Proteome Res. (19 June 2008) by Samuel H. Payne, Margaret Yau, Marcus B. Smolka, Stephen Tanner, Huilin Zhou, Vineet Bafna posted to bioinformatics fdr phosphorylation proteomics ptm by brianb on 2008-07-03 16:04:33 as along with 2 people nedwards neils
	Separating the Wheat from the Chaff: Unbiased Filtering of Background Tandem Mass Spectra Improves Protein Identification [My Copy] J. Proteome Res. (18 June 2008) by Magno Junqueira, Victor Spirin, Santana, et al.Patrice Waridel, Vineeth Surendranath, Grigoriy Kryukov, Ivan Adzhubei, Henrik Thomas, Shamil Sunyaev, Andrej Shevchenko posted to bioinformatics fdr proteomics by brianb on 2008-07-03 16:03:43 as along with 1 person guhjy
	Enhancing Peptide Identification Confidence by Combining Search Methods [My Copy] J. Proteome Res. (18 June 2008) by Gelio Alves, Wells W. Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu posted to bioinformatics fdr proteomics by brianb on 2008-06-21 01:21:47 as along with 1 person nedwards
	PhosphoScore: an open-source phosphorylation site assignment tool for MSn data. [My Copy] Journal of proteome research, Vol. 7, No. 7. (11 July 2008), pp. 3054-3059. by Brian E. Ruttenberg, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert posted to bioinformatics fdr proteomics by brianb on 2008-06-12 14:41:00 as along with 3 people guhjy neils woaizuqiu
	Limitations of Maximum Likelihood Estimation Procedures When a Majority of the Observations Are Below the Limit of Detection [My Copy] Anal. Chem. (20 May 2008) by Ram B. Jain, Richard Y. Wang posted to fdr statistics by brianb on 2008-05-20 18:59:52 as along with 1 person guhjy
	On the Benefits of Acquiring Peptide Fragment Ions at High Measured Mass Accuracy. [My Copy] Journal of the American Society for Mass Spectrometry (4 March 2008) by Alexander Scherl, Scott A A. Shaffer, Gregory K K. Taylor, et al.Patricia Hernandez, Ron D D. Appel, Pierre-Alain A. Binz, David R R. Goodlett posted to fdr proteomics by brianb on 2008-05-20 18:47:01 as along with 2 people fishtank guhjy
	Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications [My Copy] J. Proteome Res. (19 April 2008) by Xiuxia Du, Feng Yang, Nathan P. Manes, et al.David L. Stenoien, Matthew E. Monroe, Joshua N. Adkins, David J. States, Samuel O. Purvine, Ii Camp, Richard D. Smith posted to fdr phosphorylation proteomics by brianb on 2008-04-19 16:03:42 as along with 2 people neils nedwards

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proteomics	667
quantitation	142
electrophoresis	142
bioinformatics	137
interaction	78
disease	73
cancer	70
diganostic	60
chromatography	59
phosphorylation	55
network	55
fdr	43
expression	42
modeling	41
gene	40
formaldehyde	37
tissue	36
genomics	34
statistics	33
ptm	33
pathology	32
signaling	31
fragmentation	31
plasma	22
antibody	22
arrays	21
review	20
fluid	19
sample_prep	19
topdown	16
repository	16
algorithm	15
bias	15
lcm	15
silac	13
mapping	10
sysbio	10
isoform	9
xlink	9
sle	8
itraq	8
dige	7
localization	7
diabetes	5
prokaryote	5
ionization	4
imaging	4
time-course	4
annotation	4
rnai	3
csc	3
ar	3
metabolomics	3
glycosylation	3
food	3
standard	3
apoptosis	3
structure	3
population	3
hdx	3
noise	2
mrm	2
chip	2
autophagy	2
metrics	2
splicing	2
snp	2
subtilis	2
y2h	1
mirna	1
immunology	1
spr	1
db	1
toxicity	1
faims	1
fret	1
antimicrobial	1
matlab	1
opinion	1
circulating	1

brianb's fdr [43 articles] Export

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