brianb's gene [40 articles] Export

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	Local false discovery rate facilitates comparison of different microarray experiments [My Copy] Nucl. Acids Res. (13 October 2009), gkp813. by Wan-Jen Hong, Robert Tibshirani, Gilbert Chu posted to gene fdr expression by brianb on 2009-12-01 02:44:16 as along with 1 person nuin
	GATE: Software for the Analysis and Visualization of High-Dimensional Time-series Expression Data [My Copy] Bioinformatics (5 November 2009), btp628. by Ben D. MacArthur, Alexander Lachmann, Ihor R. Lemischka, Avi Ma'ayan posted to time-course proteomics gene expression bioinformatics by brianb on 2009-11-06 15:53:56 as along with 1 person ngehlenborg
	Edgetic perturbation models of human inherited disorders [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amelie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to proteomics mapping interaction gene by brianb on 2009-11-03 17:11:02 as along with 7 people karthikraman aceol mingzhi phoenixzxl tmmurali roys pedrobeltrao
	Identification of methods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expression profiling [My Copy] Genomics (04 August 2009) by Lisa Roberts, Jessica Bowers, Kelly Sensinger, Andrew Lisowski, Robert Getts, Mark G. Anderson posted to gene formaldehyde expression by brianb on 2009-10-15 18:01:45 as along with 1 person guhjy
	Oncogenic Pathway Combinations Predict Clinical Prognosis in Gastric Cancer [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000676. by Chia H. Ooi, Tatiana Ivanova, Jeanie Wu, et al.Minghui Lee, Iain B. Tan, Jiong Tao, Lindsay Ward, Jun H. Koo, Veena Gopalakrishnan, Yansong Zhu, Lai L. Cheng, Julian Lee, Sun Y. Rha, Hyun C. Chung, Kumaresan Ganesan, Jimmy So, Khee C. Soo, Dennis Lim, Weng H. Chan, Wai K. Wong, David Bowtell, Khay G. Yeoh, Heike Grabsch, Alex Boussioutas, Patrick Tan posted to network gene expression diganostic cancer by brianb on 2009-10-07 15:40:18 as along with 3 people bertelsen renatomilani ptrobajo
	CLEAN: CLustering Enrichment ANalysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 July 2009), 234. by Johannes Freudenberg, Vineet Joshi, Zhen Hu, Mario Medvedovic posted to gene expression bioinformatics by brianb on 2009-10-06 20:18:36 as along with 9 people zufar nuin rdiaz dswan guhjy frohike RamuAnandakrishnan barriot renatomilani
	Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 23. (1 December 2009), pp. 3151-3157. by Hojung Nam, Bong Chul C. Chung, Younghoon Kim, KiYoung Lee, Doheon Lee posted to metabolomics gene expression cancer by brianb on 2009-09-30 01:46:08 as along with 4 people nuin torfinnnome dswan neils
	Bioinformatics and breast cancer: what can high-throughput genomic approaches actually tell us? [My Copy] J Clin Pathol, Vol. 62, No. 10. (1 October 2009), pp. 879-885. by A. H. Sims posted to review genomics gene expression cancer bioinformatics by brianb on 2009-09-30 01:42:35 as along with 1 person rdiaz
	A first principles approach to differential expression in microarray data analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 292. by Robert Rubin posted to statistics quantitation gene expression bias by brianb on 2009-09-21 16:58:09 as along with 5 people dswan neils renatomilani rdiaz torfinnnome
	Disease signatures are robust across tissues and experiments [My Copy] Molecular Systems Biology, Vol. 5 (15 September 2009) by Joel T. Dudley, Robert Tibshirani, Tarangini Deshpande, Atul J. Butte posted to pathology gene expression by brianb on 2009-09-16 03:34:01 as along with 14 people phoenixzxl tmmurali giovanni grahamc renatomilani ptrobajo zufar jclau klo mingzhi ngehlenborg dswan winterschlaefer daforerog
	Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2348-2354. by Galina V. Glazko, Frank Emmert-Streib posted to statistics gene expression by brianb on 2009-09-01 21:17:40 as along with 8 people shikin zufar rdiaz m509396 dswan natstreet guhjy neils
	GWAS meets microarray: are the results of genome-wide association studies and gene-expression profiling consistent? Prostate cancer as an example. [My Copy] PloS one, Vol. 4, No. 8. (4 August 2009), e6511. by Ivan P. Gorlov, Gary E. Gallick, Olga Y. Gorlova, Christopher Amos, Christopher J. Logothetis posted to disease expression gene genomics by brianb on 2009-08-06 21:21:48 as along with 8 people and 1 group Zephyrus daforerog rdiaz pkonings frohike kimorley kshameer neils Journal picks
	Gene ranking and biomarker discovery under correlation [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2700-2707. by Verena Zuber, Korbinian Strimmer posted to expression gene proteomics statistics by brianb on 2009-08-03 16:37:27 as along with 7 people zufar rdiaz pkonings ericrpaquet guhjy nuin neils
	Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks [My Copy] Sci. Signal., Vol. 2, No. 81. (28 July 2009), ra40. by Shao-shan C. Huang, Ernest Fraenkel posted to expression gene network proteomics signaling by brianb on 2009-07-31 20:36:48 as along with 2 people roys sjcockell
	Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes [My Copy] Genome Biology, Vol. 3, No. 7. (18 June 2002) by Jo Vandesompele, Katleen De Preter, Filip Pattyn, et al.Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman posted to expression gene quantitation statistics by brianb on 2009-07-25 19:41:01 as along with 23 people and 2 groups mlog yogita stharward gdb lwaldron soojinclass1 maximilianh renatomilani pflock ArtemPankin guhjy sebastien_vigneau mtruksa xingxu ablejec Yanno ecattell jfr cdawson qfwills aubinhon rschnee olberd Khavkin's lab GIG
	Image metrics in the statistical analysis of DNA microarray data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 16. (31 July 2001), pp. 8944-8949. by C. S. Brown, P. C. Goodwin, P. K. Sorger posted to arrays expression gene metrics statistics by brianb on 2009-07-25 19:35:56 as along with 1 person and 2 groups jaycopeland SorgerLab CDP
	You Say You Want a Revolution: An Interview with Pat Brown [My Copy] PLoS Genet, Vol. 5, No. 7. (17 July 2009), e1000560. by Jane Gitschier posted to arrays diganostic expression gene tissue by brianb on 2009-07-17 03:54:38 as
	Biomarkers for early and late stage chronic allograft nephropathy by proteogenomic profiling of peripheral blood. [My Copy] PloS one, Vol. 4, No. 7. (2009) by S. M. Kurian, R. Heilman, T. S. Mondala, et al.A. Nakorchevsky, J. A. Hewel, D. Campbell, E. H. Robison, L. Wang, W. Lin, L. Gaber, K. Solez, H. Shidban, R. Mendez, R. L. Schaffer, J. S. Fisher, S. M. Flechner, S. R. Head, S. Horvath, J. R. Yates, C. L. Marsh, D. R. Salomon posted to disease expression gene proteomics by brianb on 2009-07-14 22:07:14 as
	puma: a Bioconductor package for propagating uncertainty in microarray analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 211. by Richard Pearson, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil Lawrence, Magnus Rattray posted to bioinformatics expression gene statistics by brianb on 2009-07-10 14:22:25 as along with 8 people and 1 group zufar rdiaz bertelsen Stew guhjy lwaldron barriot neils Bioinformatics - CRUK
	A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 2. (22 January 2003), pp. 185-193. by B. M. Bolstad, R. A. Irizarry, M. Astrand, T. P. Speed posted to bioinformatics expression gene statistics by brianb on 2009-07-10 03:03:28 as along with 22 people jperkins vplagnol neils ipark-kaist shikin michaelbarton emptyhb noushin huiminC cassj Dax42 pcahan1 chad_davis RMGraze gjuggler filmsternchen qmwwallace joepickrell ghattem bertelsen vertikalist GeeSharpMinor
	Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression [My Copy] Genome Research, Vol. 19, No. 7. (23 July 2009), pp. 1184-1194. by Céline Morey, Clémence Kress, Wendy A. Bickmore posted to expression gene by brianb on 2009-07-03 02:25:17 as along with 3 people JustinCrocker xianjun idonaldson
	Urine podocyte mRNAs mark progression of renal disease. [My Copy] Journal of the American Society of Nephrology : JASN, Vol. 20, No. 5. (May 2009), pp. 1041-1052. by Y. Sato, B. L. Wharram, S. K. Lee, et al.L. Wickman, M. Goyal, M. Venkatareddy, J. W. Chang, J. E. Wiggins, C. Lienczewski, M. Kretzler, R. C. Wiggins posted to disease expression gene by brianb on 2009-06-27 03:21:17 as
	Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. [My Copy] Nature, Vol. 459, No. 7245. (21 May 2009), pp. 428-432. by Sabrina L. Spencer, Suzanne Gaudet, John G. Albeck, John M. Burke, Peter K. Sorger posted to apoptosis electrophoresis gene noise proteomics quantitation by brianb on 2009-04-30 17:47:34 as along with 8 people gabrieljoelmitchell jjray fenghezi dswan leliavski gbloeb absterga songpku
	CNVVdb: a database of copy number variations across vertebrate genomes [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1419-1421. by Feng-Chi Chen, Yen-Zho Chen, Trees-Juen Chuang posted to db expression gene by brianb on 2009-04-20 17:10:24 as along with 5 people and 1 group jandot AlexBateman guhjy nuin rdiaz Journal picks
	Differential expression of the regulated catecholamine secretory pathway in different hereditary forms of pheochromocytoma. [My Copy] American journal of physiology. Endocrinology and metabolism, Vol. 295, No. 5. (November 2008) by G. Eisenhofer, T. T. Huynh, A. Elkahloun, et al.J. C. Morris, G. Bratslavsky, W. M. Linehan, Z. Zhuang, B. M. Balgley, C. S. Lee, M. Mannelli, J. W. Lenders, S. R. Bornstein, K. Pacak posted to cancer electrophoresis gene proteomics by brianb on 2009-04-20 15:13:00 as
	Genomewide association studies and human disease. [My Copy] The New England journal of medicine, Vol. 360, No. 17. (23 April 2009), pp. 1759-1768. by J. Hardy, A. Singleton posted to disease expression gene genomics proteomics sysbio by brianb on 2009-04-17 16:06:38 as along with 10 people and 2 groups PabloMarin daforerog misonneh guhjy najwvandijk psique Zephyrus ilyashl farhat jbhiatt MGEL Reading Roswell Cancer Crosstalk
	Copy number variants and pharmacogenomics. [My Copy] Pharmacogenomics, Vol. 7, No. 1. (January 2006), pp. 25-29. by K. Ouahchi, N. Lindeman, C. Lee posted to diganostic disease expression gene by brianb on 2009-04-13 00:22:09 as
	Copy number variation: New insights in genome diversity [My Copy] Genome Research, Vol. 16, No. 8. (1 August 2006), pp. 949-961. by Jennifer L. Freeman, George H. Perry, Lars Feuk, et al.Richard Redon, Steven A. Mccarroll, David M. Altshuler, Hiroyuki Aburatani, Keith W. Jones, Chris Tyler-Smith, Matthew E. Hurles, Nigel P. Carter, Stephen W. Scherer, Charles Lee posted to expression gene by brianb on 2009-04-13 00:21:04 as along with 10 people and 3 groups bertelsen noushin bpb balicea dchughes jri djkt bioguru2000 debasis jasonflannick Bioinformatics G4ID Genetics-of-Gambling
	Challenges and standards in integrating surveys of structural variation [My Copy] Nature Genetics, Vol. 39, No. 7 Suppl. (27 June 2007), pp. S7-S15. by Stephen W. Scherer, Charles Lee, Ewan Birney, et al.David M. Altshuler, Evan E. Eichler, Nigel P. Carter, Matthew E. Hurles, Lars Feuk posted to expression gene by brianb on 2009-04-13 00:19:49 as along with 7 people and 1 group owenlancaster dakelley guhjy bpb rdiaz jlangdon jasonflannick Bioinformatics
	Structural variation in the human genome: the impact of copy number variants on clinical diagnosis. [My Copy] Genetics in medicine : official journal of the American College of Medical Genetics, Vol. 9, No. 9. (September 2007), pp. 600-606. by L. Rodriguez-Revenga, M. Mila, C. Rosenberg, A. Lamb, C. Lee posted to diganostic expression gene by brianb on 2009-04-13 00:18:38 as along with 3 people and 1 group frohike misonneh Zephyrus Roswell Cancer Crosstalk
	Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis. [My Copy] Genomics, Vol. 93, No. 1. (23 January 2009), pp. 22-26. by Iuliana Ionita-Laza, Angela J. Rogers, Christoph Lange, Benjamin A. Raby, Charles Lee posted to disease expression gene by brianb on 2009-04-13 00:17:16 as along with 7 people and 1 group daed rdiaz sameersoi marywaye guhjy daforerog Zephyrus Roswell Cancer Crosstalk
	A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 52. (30 December 2008), pp. 20870-20875. by Kasper Lage, Niclas T. Hansen, Olof E. Karlberg, et al.Aron C. Eklund, Francisco S. Roque, Patricia K. Donahoe, Zoltan Szallasi, Thomas S. Jensen, Søren Brunak posted to pathology expression gene network tissue by brianb on 2009-03-27 15:07:02 as along with 4 people grahamc bertelsen nedwards jfr
	Modelling and analysis of gene regulatory networks [My Copy] Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780. by Guy Karlebach, Ron Shamir posted to gene modeling network by brianb on 2008-09-30 21:06:53 as along with 14 people antonkratz agonzale cannin tklee aviad_work kaarsinogen thomaskelder fgibson druvus balicea nedwards dakelley guhjy tmmurali
	Pharmacogenetics of metformin response: a step in the path toward personalized medicine. [My Copy] The Journal of clinical investigation, Vol. 117, No. 5. (May 2007), pp. 1226-1229. by M. L. Reitman, E. E. Schadt posted to expression gene by brianb on 2008-09-16 21:23:26 as
	Identification of pathways for atherosclerosis in mice: integration of quantitative trait locus analysis and global gene expression data. [My Copy] Circulation research, Vol. 101, No. 3. (3 August 2007) by Susanna S. Wang, Eric E. Schadt, Hui Wang, et al.Xuping Wang, Leslie Ingram-Drake, Weibin Shi, Thomas A. Drake, Aldons J. Lusis posted to expression gene network by brianb on 2008-09-16 21:23:03 as along with 1 person ajbattle
	Genetics of gene expression and its effect on disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 423-428. by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, et al.Amy S. Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, G. Bragi Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H. Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P. Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G. Gislason, Tryggvi Stefansson, Bjorn G. Leifsson, Unnur Thorsteinsdottir, John R. Lamb, Jeffrey R. Gulcher, Marc L. Reitman, Augustine Kong, Eric E. Schadt, Kari Stefansson posted to expression gene by brianb on 2008-09-16 21:22:30 as along with 20 people and 2 groups nicholso Zephyrus greg daforerog athma zufar druvus djkt lp2 jo_davies shikin caseybrown ptrobajo vplagnol smbe2008 echinotrix natstreet sanchezbuelna guhjy Borelli 4th_floor_JC GeneGo
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted to gene modeling network by brianb on 2008-09-16 21:22:02 as along with 22 people and 2 groups mnishimu Zephyrus biomcgary daforerog roys druvus nicklynch semrich jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr chrisamiller 4th_floor_JC GeneGo
	A gene expression network model of type 2 diabetes links cell cycle regulation in islets with diabetes susceptibility. [My Copy] Genome research, Vol. 18, No. 5. (17 May 2008), pp. 706-716. by Mark P. Keller, YounJeong Choi, Ping Wang, et al.Dawn Belt B. Davis, Mary E. Rabaglia, Angie T. Oler, Donald S. Stapleton, Carmen Argmann, Kathy L. Schueler, Steve Edwards, H. Adam Steinberg, Elias Chaibub Neto, Robert Kleinhanz, Scott Turner, Marc K. Hellerstein, Eric E. Schadt, Brian S. Yandell, Christina Kendziorski, Alan D. Attie posted to diabetes expression gene by brianb on 2008-09-16 21:16:19 as along with 4 people ptrobajo druvus frohike caseybrown
	Mapping the Genetic Architecture of Gene Expression in Human Liver [My Copy] PLoS Biology, Vol. 6, No. 5. (1 May 2008), e107. by Eric E. Schadt, Cliona Molony, Eugene Chudin, et al.Ke Hao, Xia Yang, Pek Y. Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D. Storey, Iliana Avila-Campillo, Mark J. Kruger, Jason M. Johnson, Carol A. Rohl, Atila van Nas, Margarete Mehrabian, Thomas A. Drake, Aldons J. Lusis, Ryan C. Smith, Peter F. Guengerich, Stephen C. Strom, Erin Schuetz, Thomas H. Rushmore, Roger Ulrich posted to expression gene by brianb on 2008-09-16 20:57:05 as along with 3 people balicea Ema lp2
	Noise Propagation in Gene Networks [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1965-1969. by Juan M. Pedraza, Alexander van Oudenaarden posted to gene by brianb on 2008-05-12 20:15:05 as along with 17 people balabu boko4ikameto winterschlaefer cjryan jimeet rklancer snuppepuppan JKelly555 samal madhadron jiyu mhucka timflutre margaritis suizan jiny dylanwalker

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proteomics	666
quantitation	142
electrophoresis	142
bioinformatics	137
interaction	78
disease	73
cancer	70
diganostic	60
chromatography	59
phosphorylation	55
network	55
fdr	43
expression	42
modeling	41
gene	40
formaldehyde	37
tissue	36
genomics	34
statistics	33
ptm	33
pathology	32
signaling	31
fragmentation	31
antibody	22
plasma	22
arrays	21
review	20
sample_prep	19
fluid	19
topdown	16
repository	16
lcm	15
bias	15
algorithm	15
silac	13
mapping	10
sysbio	10
isoform	9
xlink	9
sle	8
itraq	8
localization	7
dige	6
diabetes	5
prokaryote	5
ionization	4
imaging	4
time-course	4
annotation	4
hdx	3
ar	3
csc	3
metabolomics	3
food	3
glycosylation	3
apoptosis	3
rnai	3
structure	3
population	3
noise	2
standard	2
mrm	2
chip	2
autophagy	2
metrics	2
splicing	2
snp	2
subtilis	2
y2h	1
mirna	1
immunology	1
spr	1
db	1
toxicity	1
faims	1
fret	1
antimicrobial	1
matlab	1
opinion	1
circulating	1

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