brianb's genomics [34 articles] Export

Recent papers added to brianb's library classified by the tag genomics. You can also see everyone's genomics.

	Does massively parallel DNA resequencing signify the end of histopathology as we know it? [My Copy] The Journal of Pathology, Vol. 9999, No. 9999. (2009), n/a. by Samuel A. J. R. Aparicio, David G. Huntsman posted to sysbio pathology genomics by brianb on 2009-11-17 21:15:50 as
	Our changing view of the genomic landscape of cancer [My Copy] The Journal of Pathology, Vol. 9999, No. 9999. (2009), n/a. by Daphne W. Bell posted to genomics cancer by brianb on 2009-11-16 18:33:42 as
	The challenges of sequencing by synthesis [My Copy] Nature Biotechnology In Nat Biotech, Vol. 27, No. 11. (06 November 2009), pp. 1013-1023. by Carl W. Fuller, Lyle R. Middendorf, Steven A. Benner, et al.George M. Church, Timothy Harris, Xiaohua Huang, Stevan B. Jovanovich, John R. Nelson, Jeffery A. Schloss, David C. Schwartz, Dmitri V. Vezenov posted to genomics by brianb on 2009-11-12 18:12:37 as along with 6 people alexknight viren4388 heliopais JonD chvlyl seb1
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to genomics cancer by brianb on 2009-10-13 18:26:14 as along with 15 people and 2 groups burak ongenetics misonneh pst jwfoley stubrown chvlyl giovenko frohike Zephyrus jsuchit mkiyer torfinnnome merpublic djkt Chinnaiyan Lab Journal picks
	Reactome Array: Forging a Link Between Metabolome and Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 252-257. by A. Beloqui, M. E. Guazzaroni, F. Pazos, et al.J. M. Vieites, M. Godoy, O. V. Golyshina, T. N. Chernikova, A. Waliczek, R. Silva-Rocha, Y. Al-ramahi, V. La Cono, C. Mendez, J. A. Salas, R. Solano, M. M. Yakimov, K. N. Timmis, P. N. Golyshin, M. Ferrer posted to proteomics metabolomics genomics by brianb on 2009-10-09 15:37:08 as along with 9 people and 1 group ajsferreira kinestetika renatomilani leliavski michaelbarton abhishek_tiwari TRHvidsten ptrobajo gbloeb Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Raja Jothi, S. Balaji, Arthur Wuster, et al.Joshua A. Grochow, Jorg Gsponer, Teresa M. Przytycka, L. Aravind, Madan M. Babu posted to network modeling genomics by brianb on 2009-10-09 15:20:14 as along with 12 people ashishanand apocapoc dswan sjcockell zwang fenghezi rdiaz megraw poirel TRHvidsten jjray biomcgary
	An agenda for personalized medicine [My Copy] Nature, Vol. 461, No. 7265. (07 October 2009), pp. 724-726. by Pauline C. Ng, Sarah S. Murray, Samuel Levy, J. Craig Venter posted to opinion genomics by brianb on 2009-10-08 16:32:38 as along with 4 people operon merpublic rdiaz chriswillmott
	Bioinformatics and breast cancer: what can high-throughput genomic approaches actually tell us? [My Copy] J Clin Pathol, Vol. 62, No. 10. (1 October 2009), pp. 879-885. by A. H. Sims posted to review genomics gene expression cancer bioinformatics by brianb on 2009-09-30 01:42:35 as along with 1 person rdiaz
	A perfect genome annotation is within reach with the proteomics and genomics alliance [My Copy] Current Opinion in Microbiology, Vol. 12, No. 3. (4 June 2009), pp. 292-300. by Jean Armengaud posted to proteomics genomics by brianb on 2009-09-16 03:46:00 as along with 2 people nedwards guhjy
	Molecular networks as sensors and drivers of common human diseases [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 218-223. by Eric E. Schadt posted to signaling proteomics network interaction genomics by brianb on 2009-09-14 17:58:14 as along with 15 people daed robfree apocapoc ptrobajo MurphysLab biomcgary greg inesdesantiago pablocarb abhishek_tiwari zufar pkonings rdiaz daforerog megraw
	The promise and reality of personal genomics. [My Copy] Genome biology, Vol. 10, No. 9. (2 September 2009), 237. by Bryndis Yngvadottir, Daniel G. Macarthur, Hanjun Jin, Chris Tyler-Smith posted to genomics by brianb on 2009-09-03 21:55:13 as along with 5 people and 1 group jandot jamesmorris timhubbard dullhunk daforerog Journal picks
	A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2787-2794. by Andreas Keller, Christina Backes, Andreas Gerasch, et al.Michael Kaufmann, Oliver Kohlbacher, Eckart Meese, Hans-Peter Lenhof posted to network modeling genomics bioinformatics algorithm by brianb on 2009-08-28 19:05:22 as along with 9 people and 1 group bertelsen jperkins tonamswish heliopais dolchan greg zufar rdiaz ptrobajo Orengo Group Journal Picks
	integrOmics: an R package to unravel relationships between two omics datasets [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2855-2856. by Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean posted to proteomics genomics bioinformatics algorithm by brianb on 2009-08-28 19:02:37 as along with 17 people and 1 group molnet-mna jperkins tonamswish dswan mayercd operon kshameer heliopais dolchan nuin ptrobajo sebastien_vigneau rdiaz cassj neils natstreet druvus Orengo Group Journal Picks
	Screening for Epidermal Growth Factor Receptor Mutations in Lung Cancer [My Copy] N Engl J Med, Vol. 361, No. 10. (3 September 2009), pp. 958-967. by Rafael Rosell, Teresa Moran, Cristina Queralt, et al.Rut Porta, Felipe Cardenal, Carlos Camps, Margarita Majem, Guillermo Lopez-Vivanco, Dolores Isla, Mariano Provencio, Amelia Insa, Bartomeu Massuti, Jose L. Gonzalez-Larriba, Luis Paz-Ares, Isabel Bover, Rosario Garcia-Campelo, Miguel A. Moreno, Silvia Catot, Christian Rolfo, Noemi Reguart, Ramon Palmero, Jose M. Sanchez, Roman Bastus, Clara Mayo, Jordi Bertran-Alamillo, Miguel A. Molina, Jose J. Sanchez, Miquel Taron, the Spanish Lung Cancer Group posted to genomics disease by brianb on 2009-08-24 20:33:35 as along with 2 people miltonbarros jbhiatt
	GWAS meets microarray: are the results of genome-wide association studies and gene-expression profiling consistent? Prostate cancer as an example. [My Copy] PloS one, Vol. 4, No. 8. (4 August 2009), e6511. by Ivan P. Gorlov, Gary E. Gallick, Olga Y. Gorlova, Christopher Amos, Christopher J. Logothetis posted to disease expression gene genomics by brianb on 2009-08-06 21:21:48 as along with 8 people and 1 group Zephyrus daforerog rdiaz pkonings frohike kimorley kshameer neils Journal picks
	Standardizing the standards [My Copy] Molecular Systems Biology, Vol. 2 (21 February 2006) by John Quackenbush posted to genomics proteomics standard by brianb on 2009-07-21 16:39:27 as along with 7 people seb1 allysonlister neils fgibson dullhunk mhucka jfr
	The Scientific Foundation for personal genomics: recommendations from a National Institutes of Health-Centers for Disease Control and Prevention multidisciplinary workshop. [My Copy] Genetics in medicine : official journal of the American College of Medical Genetics, Vol. 11, No. 8. (16 August 2009), pp. 559-567. by Muin J. Khoury, Colleen M. McBride, Sheri D. Schully, et al.John P. Ioannidis, W. Gregory Feero, A. Cecile Janssens, Marta Gwinn, Denise G. Simons-Morton, Jay M. Bernhardt, Michele Cargill, Stephen J. Chanock, George M. Church, Ralph J. Coates, Francis S. Collins, Robert T. Croyle, Barry R. Davis, Gregory J. Downing, Amy Duross, Susan Friedman, Mitchell H. Gail, Geoffrey S. Ginsburg, Robert C. Green, Mark H. Greene, Philip Greenland, Jeffrey R. Gulcher, Andro Hsu, Kathy L. Hudson, Sharon L. Kardia, Paul L. Kimmel, Michael S. Lauer, Amy M. Miller, Kenneth Offit, David F. Ransohoff, J. Scott Roberts, Rebekah S. Rasooly, Kari Stefansson, Sharon F. Terry, Steven M. Teutsch, Angela Trepanier, Kay L. Wanke, John S. Witte, Jianfeng Xu posted to bias diganostic genomics by brianb on 2009-07-21 16:28:17 as along with 1 person PredictER
	Genomes2Drugs: identifies target proteins and lead drugs from proteome data. [My Copy] PloS one, Vol. 4, No. 7. (10 July 2009), e6195. by David Toomey, Heinrich C. Hoppe, Marian P. Brennan, Kevin B. Nolan, Anthony J. Chubb posted to genomics proteomics by brianb on 2009-07-16 15:22:25 as along with 3 people bertelsen guhjy sjcockell
	Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function [My Copy] Genome Research (22 June 2009) by Monica A. Grobei, Ermir Qeli, Erich Brunner, et al.Hubert Rehrauer, Runxuan Zhang, Bernd Roschitzki, Konrad Basler, Christian H. Ahrens, Ueli Grossniklaus posted to annotation genomics proteomics by brianb on 2009-07-02 20:24:22 as
	Discovery and revision of Arabidopsis genes by proteogenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 52. (30 December 2008), pp. 21034-21038. by Natalie E. Castellana, Samuel H. Payne, Zhouxin Shen, Mario Stanke, Vineet Bafna, Steven P. Briggs posted to annotation genomics proteomics by brianb on 2009-06-29 19:43:54 as along with 5 people natstreet dandaman nedwards TRHvidsten jmartin49
	rtracklayer: an R package for interfacing with genome browsers. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1841-1842. by Michael Lawrence, Robert Gentleman, Vincent Carey posted to bioinformatics genomics statistics by brianb on 2009-05-27 15:32:03 as along with 16 people and 3 groups daveGerrard iris42 guhjy aprasad dswan cisevol shikin inesdesantiago daforerog ppgardne natstreet nuin kshameer neils chrisamiller druvus Bioinformatics BergmanLab Journal picks
	Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 18. (5 May 2009), pp. 7507-7512. by Sarah E. Calvo, David J. Pagliarini, Vamsi K. Mootha posted to expression genomics proteomics by brianb on 2009-04-18 23:24:19 as along with 4 people daforerog psique fenghezi bpcusack
	Genomewide association studies and human disease. [My Copy] The New England journal of medicine, Vol. 360, No. 17. (23 April 2009), pp. 1759-1768. by J. Hardy, A. Singleton posted to disease expression gene genomics proteomics sysbio by brianb on 2009-04-17 16:06:38 as along with 10 people and 2 groups PabloMarin daforerog misonneh guhjy najwvandijk psique Zephyrus ilyashl farhat jbhiatt MGEL Reading Roswell Cancer Crosstalk
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to bioinformatics genomics by brianb on 2009-04-09 15:56:07 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil heliopais dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet Neeperando druvus neils KCL & UCL Bioinformatics Bioinformatics
	Genome-wide atlas of gene expression in the adult mouse brain. [My Copy] Nature, Vol. 445, No. 7124. (11 January 2007), pp. 168-176. by Ed S. Lein, Michael J. Hawrylycz, Nancy Ao, et al.Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F. Boe, Mark S. Boguski, Kevin S. Brockway, Emi J. Byrnes, Lin Chen, Li Chen, Tsuey-Ming M. Chen, Mei Chi C. Chin, Jimmy Chong, Brian E. Crook, Aneta Czaplinska, Chinh N. Dang, Suvro Datta, Nick R. Dee, Aimee L. Desaki, Tsega Desta, Ellen Diep, Tim A. Dolbeare, Matthew J. Donelan, Hong-Wei W. Dong, Jennifer G. Dougherty, Ben J. Duncan, Amanda J. Ebbert, Gregor Eichele, Lili K. Estin, Casey Faber, Benjamin A. Facer, Rick Fields, Shanna R. Fischer, Tim P. Fliss, Cliff Frensley, Sabrina N. Gates, Katie J. Glattfelder, Kevin R. Halverson, Matthew R. Hart, John G. Hohmann, Maureen P. Howell, Darren P. Jeung, Rebecca A. Johnson, Patrick T. Karr, Reena Kawal, Jolene M. Kidney, Rachel H. Knapik, Chihchau L. Kuan, James H. Lake, Annabel R. Laramee, Kirk D. Larsen, Christopher Lau, Tracy A. Lemon, Agnes J. Liang, Ying Liu, Lon T. Luong, Jesse Michaels, Judith J. Morgan, Rebecca J. Morgan, Marty T. Mortrud, Nerick F. Mosqueda, Lydia L. Ng, Randy Ng, Geralyn J. Orta, Caroline C. Overly, Tu H. Pak, Sheana E. Parry, Sayan D. Pathak, Owen C. Pearson, Ralph B. Puchalski, Zackery L. Riley, Hannah R. Rockett, Stephen A. Rowland, Joshua J. Royall, Marcos J. Ruiz, Nadia R. Sarno, Katherine Schaffnit, Nadiya V. Shapovalova, Taz Sivisay, Clifford R. Slaughterbeck, Simon C. Smith, Kimberly A. Smith, Bryan I. Smith, Andy J. Sodt, Nick N. Stewart, Kenda-Ruth R. Stumpf, Susan M. Sunkin, Madhavi Sutram, Angelene Tam, Carey D. Teemer, Christina Thaller, Carol L. Thompson, Lee R. Varnam, Axel Visel, Ray M. Whitlock, Paul E. Wohnoutka, Crissa K. Wolkey, Victoria Y. Wong, Matthew Wood, Murat B. Yaylaoglu, Rob C. Young, Brian L. Youngstrom, Xu Feng F. Yuan, Bin Zhang, Theresa A. Zwingman, Allan R. Jones posted to expression genomics tissue by brianb on 2009-03-24 16:55:35 as along with 17 people and 4 groups booker carlk daforerog rupachile jfr dchughes adepace jclau mgaldzic nm JBEgwa01 cjeans N0131826 cmor rschulz dlmace jeremymiller EisenLab G4ID CHIP Genetics-of-Gambling
	GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. [My Copy] Bioinformatics (12 May 2007) by Sean Davis, Paul S S. Meltzer posted to arrays bioinformatics expression genomics by brianb on 2009-03-11 14:26:21 as along with 11 people and 1 group manduca dswan neils shikin guhjy jfr ugengma giovenko ablejec zhouyu bertelsen Bioinformatics
	Is molecular profiling ready for use in clinical decision making? [My Copy] Oncologist, Vol. 12, No. 3. (March 2007), pp. 301-311. by J. P. Ioannidis posted to diganostic disease genomics by brianb on 2009-01-25 22:41:18 as along with 2 people jfr jo_davies
	Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources [My Copy] Nature Protocols In Nat. Protocols, Vol. 4, No. 1. (18 December 2008), pp. 44-57. by Da W. Huang, Brad T. Sherman, Richard A. Lempicki posted to algorithm bioinformatics genomics proteomics statistics by brianb on 2009-01-10 21:45:01 as along with 16 people and 2 groups darian rschulz jperkins tonamswish operon VGreiff jfr Stew bertelsen Sonix dswan guhjy wimufi idonaldson mrochman daforerog Bioinformatics - CRUK Bioinformatics
	MAPU 2.0: high-accuracy proteomes mapped to genomes. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (23 January 2009) by F. Gnad, M. Oroshi, E. Birney, M. Mann posted to bioinformatics genomics proteomics by brianb on 2008-10-26 16:30:00 as along with 2 people lptolik guhjy
	Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e69. by Jun Zhu, Matthew C. Wiener, Chunsheng Zhang, et al.Arthur Fridman, Eric Minch, Pek Y. Lum, Jeffrey R. Sachs, Eric E. Schadt posted to expression genomics by brianb on 2008-09-16 21:23:59 as along with 8 people roys nicholso jfr hms jo_davies semrich tmmurali beete
	A General Definition and Nomenclature for Alternative Splicing Events [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000147. by Michael Sammeth, Sylvain Foissac, Roderic Guigó posted to genomics splicing by brianb on 2008-08-14 20:52:18 as along with 8 people and 1 group malcook treangen madreach sabahkadri Ema bootsy jm12 wutongbin BenosLab
	Interlaboratory Performance of a Microarray-Based Gene Expression Test to Determine Tissue of Origin in Poorly Differentiated and Undifferentiated Cancers [My Copy] J Mol Diagn, Vol. 10, No. 1. (1 January 2008), pp. 67-77. by Catherine I. Dumur, Maureen Lyons-Weiler, Christin Sciulli, et al.Carleton T. Garrett, Iris Schrijver, Tara K. Holley, Juan Rodriguez-Paris, Jonathan R. Pollack, James L. Zehnder, Melissa Price, Jill M. Hagenkord, Ted C. Rigl, Ljubomir J. Buturovic, Glenda G. Anderson, Federico A. Monzon posted to cancer diganostic genomics by brianb on 2008-08-13 05:18:01 as
	Assessing the limits of genomic data integration for predicting protein networks [My Copy] Genome Research, Vol. 15, No. 7. (July 2005), pp. 945-953. by Long J. Lu, Yu Xia, Alberto Paccanaro, Haiyuan Yu, Mark Gerstein posted to bioinformatics genomics modeling network by brianb on 2008-06-05 05:08:41 as along with 17 people and 3 groups ashishanand paccanarolab jaimie aelef okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards iris_2001 carlk phoenixzxl Paccanaro Lab kdl Bioinformatics
	Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes [My Copy] Genome Res. (April 2008) by Nitin Gupta, Jamal Benhamida, Vipul Bhargava, et al.Daniel Goodman, Elisabeth Kain, Ian Kerman, Ngan Nguyen, Noah Ollikainen, Jesse Rodriguez, Jian Wang, Mary S. Lipton, Margaret Romine, Vineet Bafna, Richard D. Smith, Pavel A. Pevzner posted to genomics proteomics by brianb on 2008-04-23 15:22:33 as along with 1 person neils

Note: You may cite this page as: http://www.citeulike.org/user/brianb/tag/genomics

proteomics	673
electrophoresis	145
quantitation	144
bioinformatics	137
interaction	78
disease	73
cancer	70
chromatography	61
diganostic	60
phosphorylation	55
network	55
fdr	43
expression	42
modeling	41
gene	40
tissue	37
formaldehyde	37
genomics	34
statistics	33
ptm	33
pathology	32
signaling	31
fragmentation	31
plasma	22
antibody	22
arrays	21
review	20
fluid	19
sample_prep	19
repository	16
topdown	16
bias	15
lcm	15
algorithm	15
silac	13
sysbio	10
mapping	10
isoform	9
xlink	9
itraq	8
sle	8
localization	7
dige	7
prokaryote	5
diabetes	5
ionization	5
time-course	4
imaging	4
annotation	4
hdx	3
structure	3
food	3
ar	3
apoptosis	3
metabolomics	3
standard	3
population	3
rnai	3
csc	3
glycosylation	3
chip	2
snp	2
splicing	2
subtilis	2
autophagy	2
mrm	2
noise	2
metrics	2
y2h	1
immunology	1
mirna	1
visualization	1
spr	1
db	1
toxicity	1
faims	1
fret	1
antimicrobial	1
matlab	1
opinion	1
circulating	1

brianb's genomics [34 articles] Export

brianb's tags