brianb's interaction [78 articles] Export

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	MINT, the molecular interaction database: 2009 update [My Copy] Nucl. Acids Res. (6 November 2009), gkp983. by Arnaud Ceol, Andrew Chatr Aryamontri, Luana Licata, et al.Daniele Peluso, Leonardo Briganti, Livia Perfetto, Luisa Castagnoli, Gianni Cesareni posted to repository interaction by brianb on 2009-11-09 02:07:56 as along with 2 people aceol neils
	Edgetic perturbation models of human inherited disorders [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amelie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to proteomics mapping interaction gene by brianb on 2009-11-03 17:11:02 as along with 7 people karthikraman aceol mingzhi phoenixzxl tmmurali roys pedrobeltrao
	Proteomics strategy for quantitative protein interaction profiling in cell extracts. [My Copy] Nature methods, Vol. 6, No. 10. (13 October 2009), pp. 741-744. by Kirti Sharma, Christoph Weber, Michaela Bairlein, et al.Zoltán Greff, György Kéri, Jürgen Cox, Jesper V. Olsen, Henrik Daub posted to proteomics mapping interaction by brianb on 2009-10-23 17:02:18 as along with 2 people guhjy renatomilani
	Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics [My Copy] PLoS ONE, Vol. 4, No. 10. (6 October 2009), e7310. by Mihaela E. Sardiu, Joshua M. Gilmore, Michael J. Carrozza, et al.Bing Li, Jerry L. Workman, Laurence Florens, Michael P. Washburn posted to quantitation proteomics modeling interaction by brianb on 2009-10-07 17:37:24 as along with 1 person poirel
	Molecular networks as sensors and drivers of common human diseases [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 218-223. by Eric E. Schadt posted to signaling proteomics network interaction genomics by brianb on 2009-09-14 17:58:14 as along with 15 people daed robfree apocapoc ptrobajo MurphysLab biomcgary greg inesdesantiago pablocarb abhishek_tiwari zufar pkonings rdiaz daforerog megraw
	Proteome-wide Prediction of Signal Flow Direction in Protein Interaction Networks Based on Interacting Domains [My Copy] Mol Cell Proteomics, Vol. 8, No. 9. (1 September 2009), pp. 2063-2070. by Wei Liu, Dong Li, Jian Wang, Hongwei Xie, Yunping Zhu, Fuchu He posted to signaling proteomics modeling interaction by brianb on 2009-09-11 01:27:52 as along with 1 person hryk
	Lysine acetylation targets protein complexes and co-regulates major cellular functions. [My Copy] Science (New York, N.Y.), Vol. 325, No. 5942. (14 August 2009), pp. 834-840. by Chunaram Choudhary, Chanchal Kumar, Florian Gnad, et al.Michael L. Nielsen, Michael Rehman, Tobias C. Walther, Jesper V. Olsen, Matthias Mann posted to interaction proteomics ptm by brianb on 2009-07-19 03:19:50 as along with 3 people and 1 group ppgardne nzm gbloeb Journal picks
	Vasopressin-stimulated increase in phosphorylation at Ser269 potentiates plasma membrane retention of aquaporin-2. [My Copy] The Journal of biological chemistry, Vol. 283, No. 36. (5 September 2008), pp. 24617-24627. by J. D. Hoffert, R. A. Fenton, H. B. Moeller, et al.B. Simons, D. Tchapyjnikov, B. W. McDill, M. J. Yu, T. Pisitkun, F. Chen, M. A. Knepper posted to disease interaction phosphorylation proteomics signaling by brianb on 2009-07-15 16:13:33 as
	Using Phage Display to Select Antibodies Recognizing Post-translational Modifications Independently of Sequence Context [My Copy] Mol Cell Proteomics, Vol. 5, No. 12. (1 December 2006), pp. 2350-2363. by John W. Kehoe, Nileena Velappan, Monica Walbolt, et al.Jytte Rasmussen, Dave King, Jianlong Lou, Kristeene Knopp, Peter Pavlik, James D. Marks, Carolyn R. Bertozzi, Andrew R. Bradbury posted to interaction proteomics ptm by brianb on 2009-06-07 20:54:12 as
	Identification of Cross-Linked Peptides after Click-Based Enrichment Using Sequential Collision-Induced Dissociation and Electron Transfer Dissociation Tandem Mass Spectrometry. [My Copy] Analytical chemistry (4 June 2009) by Saiful M. Chowdhury, Xiuxia Du, Nikola Tolić, et al.Si Wu, Ronald J. Moore, M. Uljana Mayer, Richard D. Smith, Joshua N. Adkins posted to fragmentation interaction proteomics by brianb on 2009-06-07 20:47:54 as
	Quantitative cell signalling analysis reveals down-regulation of MAPK pathway activation in colorectal cancer. [My Copy] The Journal of pathology (20 March 2009) by Christian Gulmann, Katherine M M. Sheehan, Ronán M M. Conroy, et al.Julia D D. Wulfkuhle, Virginia Espina, Michelle J J. Mullarkey, Elaine W W. Kay, Lance A A. Liotta, Emanuel F F. Petricoin Iii posted to arrays interaction proteomics quantitation signaling by brianb on 2009-05-01 18:16:26 as
	Host cell interactome of tyrosine-phosphorylated bacterial proteins. [My Copy] Cell host & microbe, Vol. 5, No. 4. (23 April 2009), pp. 397-403. by M. Selbach, F. E. Paul, S. Brandt, et al.P. Guye, O. Daumke, S. Backert, C. Dehio, M. Mann posted to interaction phosphorylation proteomics by brianb on 2009-04-26 22:06:06 as along with 2 people nzm renatomilani
	Formaldehyde cross-linking of proteins to osteoclast differentiation factor promoter for the identification of biofunctional proteins. [My Copy] Saudi medical journal, Vol. 30, No. 4. (April 2009), pp. 472-477. by M. Haghighi posted to formaldehyde interaction proteomics by brianb on 2009-04-18 23:11:06 as
	Unifying fluorescence microscopy and mass spectrometry for studying protein complexes in cells [My Copy] Mol Cell Proteomics (5 March 2009), M800397-MCP200. by Changhui Deng, Xinghua Xiong, Andrew N. Krutchinsky posted to interaction proteomics by brianb on 2009-04-06 17:53:08 as along with 1 person guhjy
	Unambiguous assignment of intramolecular chemical cross-links in modified mammalian membrane proteins by Fourier transform-tandem mass spectrometry. [My Copy] Analytical chemistry, Vol. 77, No. 16. (15 August 2005), pp. 5101-5106. by P. Novak, W. E. Haskins, M. J. Ayson, et al.R. B. Jacobsen, J. S. Schoeniger, M. D. Leavell, M. M. Young, G. H. Kruppa posted to fragmentation interaction proteomics xlink by brianb on 2009-03-26 18:11:03 as
	Identification of the interactions between cytochrome P450 2E1 and cytochrome b5 by mass spectrometry and site-directed mutagenesis. [My Copy] The Journal of biological chemistry, Vol. 281, No. 29. (21 July 2006), pp. 20404-20417. by Q. Gao, C. E. Doneanu, S. A. Shaffer, E. T. Adman, D. R. Goodlett, S. D. Nelson posted to fragmentation interaction proteomics xlink by brianb on 2009-03-26 18:10:30 as
	Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation. [My Copy] Mol Cell Proteomics, Vol. 7, No. 2. (February 2008), pp. 326-346. by D. Pflieger, M. A. Jünger, M. Müller, et al.O. Rinner, H. Lee, P. M. Gehrig, M. Gstaiger, R. Aebersold posted to interaction proteomics quantitation by brianb on 2009-03-20 15:50:02 as along with 1 person guhjy
	Identification of Protein-Protein Interactions and Topologies in Living Cells with Chemical Cross-linking and Mass Spectrometry [My Copy] Mol Cell Proteomics, Vol. 8, No. 3. (1 March 2009), pp. 409-420. by Haizhen Zhang, Xiaoting Tang, Gerhard R. Munske, Nikola Tolic, Gordon A. Anderson, James E. Bruce posted to interaction proteomics by brianb on 2009-03-13 17:31:39 as along with 1 person guhjy
	Integrating siRNA and protein-protein interaction data to identify an expanded insulin signaling network. [My Copy] Genome research, Vol. 19, No. 6. (4 June 2009), pp. 1057-1067. by Zhidong Tu, Carmen Argmann, Kenny K. Wong, et al.Lyndon J. Mitnaul, Stephen Edwards, Iliana C. Sach, Jun Zhu, Eric E. Schadt posted to interaction network proteomics rnai signaling by brianb on 2009-03-13 17:29:55 as along with 4 people ptrobajo megraw kshameer roys
	Identifying the proteins to which small-molecule probes and drugs bind in cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4617-4622. by S. E. Ong, M. Schenone, A. A. Margolin, et al.X. Li, K. Do, M. K. Doud, D. R. Mani, L. Kuai, X. Wang, J. L. Wood, N. J. Tolliday, A. N. Koehler, L. A. Marcaurelle, T. R. Golub, R. J. Gould, S. L. Schreiber, S. A. Carr posted to disease interaction proteomics quantitation by brianb on 2009-03-06 19:10:25 as along with 3 people guhjy mingzhi fernan
	A Temporal Threshold for Formaldehyde Crosslinking and Fixation [My Copy] PLoS ONE, Vol. 4, No. 2. (27 February 2009), e4636. by Lars Schmiedeberg, Pete Skene, Aimée Deaton, Adrian Bird posted to formaldehyde interaction by brianb on 2009-03-01 02:05:43 as along with 2 people and 1 group polivares cvaldes JLab
	Exploring DNA-Binding Proteins with In Vivo Chemical Cross-Linking and Mass Spectrometry [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Haibo Qiu, Yinsheng Wang posted to formaldehyde interaction proteomics by brianb on 2009-02-20 14:51:34 as along with 1 person guhjy
	Transmembrane helix of novel oncogene with kinase-domain (NOK) influences its oligomerization and limits the activation of RAS/MAPK signaling [My Copy] Molecules and Cells, Vol. 27, No. 1. (1 January 2009), pp. 39-45. by Ying-Hua Li, Yin-Yin Wang, Shan Zhong, et al.Zhi-Li Rong, Yong-Ming Ren, Zhi-Yong Li, Shu-Ping Zhang, Zhi-Jie Chang, Li Liu posted to interaction proteomics by brianb on 2009-02-18 17:40:36 as
	The VP16 activation domain interacts with multiple transcriptional components as determined by protein-protein cross-linking in vivo. [My Copy] J Biol Chem, Vol. 277, No. 48. (29 November 2002), pp. 46043-46050. by D. B. Hall, K. Struhl posted to formaldehyde interaction proteomics by brianb on 2009-02-17 17:15:18 as along with 2 people faion mapplab
	The in vivo brain interactome of the amyloid precursor protein. [My Copy] Molecular & cellular proteomics : MCP, Vol. 7, No. 1. (January 2008), pp. 15-34. by Y. Bai, K. Markham, F. Chen, et al.R. Weerasekera, J. Watts, P. Horne, Y. Wakutani, R. Bagshaw, P. M. Mathews, P. E. Fraser, D. Westaway, P. St George-Hyslop, G. Schmitt-Ulms posted to formaldehyde interaction proteomics by brianb on 2009-02-15 00:58:54 as
	Interactome and interface protocol (2IP): a novel strategy for high sensitivity topology mapping of protein complexes. [My Copy] Proteomics, Vol. 7, No. 21. (November 2007), pp. 3835-3852. by R. Weerasekera, Y. M. She, K. A. Markham, et al.Y. Bai, N. Opalka, S. Orlicky, F. Sicheri, T. Kislinger, G. Schmitt-Ulms posted to formaldehyde interaction proteomics by brianb on 2009-02-15 00:58:06 as
	Time-controlled transcardiac perfusion cross-linking for the study of protein interactions in complex tissues. [My Copy] Nature biotechnology, Vol. 22, No. 6. (June 2004), pp. 724-731. by G. Schmitt-Ulms, K. Hansen, J. Liu, et al.C. Cowdrey, J. Yang, S. J. DeArmond, F. E. Cohen, S. B. Prusiner, M. A. Baldwin posted to formaldehyde interaction xlink by brianb on 2009-02-15 00:56:58 as
	Quantitative interaction proteomics using mass spectrometry. [My Copy] Nature methods, Vol. 6, No. 3. (8 March 2009), pp. 203-205. by Alexander Wepf, Timo Glatter, Alexander Schmidt, Ruedi Aebersold, Matthias Gstaiger posted to interaction proteomics quantitation by brianb on 2009-02-13 01:11:00 as along with 2 people guhjy stasaki
	Affinity purification strategy to capture human endogenous proteasome complexes diversity and to identify proteasome-interacting proteins. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 5. (3 May 2009), pp. 1150-1164. by Marie-Pierre P. Bousquet-Dubouch, Emilie Baudelet, Frédéric Guérin, et al.Mariette Matondo, Sandrine Uttenweiler-Joseph, Odile Burlet-Schiltz, Bernard Monsarrat posted to interaction proteomics by brianb on 2009-02-08 20:07:18 as
	Dynamic modularity in protein interaction networks predicts breast cancer outcome. [My Copy] Nature biotechnology, Vol. 27, No. 2. (1 February 2009), pp. 199-204. by Ian W. Taylor, Rune Linding, David Warde-Farley, et al.Yongmei Liu, Catia Pesquita, Daniel Faria, Shelley Bull, Tony Pawson, Quaid Morris, Jeffrey L. Wrana posted to diganostic disease interaction network proteomics by brianb on 2009-02-04 22:37:19 as along with 14 people and 1 group ukhan zufar guhjy jfr frohike fenghezi ptrobajo jaimie nedwards dakelley absterga phoenixzxl grahamc provero cube_and_beyond
	An integrated workflow for charting the human interaction proteome: insights into the PP2A system [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by Timo Glatter, Alexander Wepf, Ruedi Aebersold, Matthias Gstaiger posted to interaction modeling network proteomics by brianb on 2009-01-21 17:26:03 as along with 2 people phoenixzxl guhjy
	Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by David Kentner, Victor Sourjik posted to interaction modeling network proteomics signaling by brianb on 2009-01-21 17:25:08 as along with 1 person jjray
	Use of high-throughput mass spectrometry to elucidate host-pathogen interactions in Salmonella. [My Copy] Future microbiology, Vol. 3 (December 2008), pp. 625-634. by K. D. Rodland, J. N. Adkins, C. Ansong, et al.S. Chowdhury, N. P. Manes, L. Shi, H. Yoon, R. D. Smith, F. Heffron posted to interaction modeling proteomics by brianb on 2008-12-23 14:56:48 as
	An integrated comparative phosphoproteomic and bioinformatic approach reveals a novel class of MPM-2 motifs upregulated in EGFRvIII-expressing glioblastoma cells. [My Copy] Molecular bioSystems, Vol. 5, No. 1. (January 2009), pp. 59-67. by B. A. Joughin, K. M. Naegle, P. H. Huang, M. B. Yaffe, D. A. Lauffenburger, F. M. White posted to interaction phosphorylation proteomics signaling by brianb on 2008-12-17 21:49:07 as
	Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. [My Copy] Trends Biochem Sci, Vol. 25, No. 3. (March 2000), pp. 99-104. by V. Orlando posted to formaldehyde interaction proteomics by brianb on 2008-12-11 01:47:33 as along with 2 people beccaf22 kristallreiner
	Characterization of protein cross-links via mass spectrometry and an open-modification search strategy. [My Copy] Analytical chemistry, Vol. 80, No. 22. (15 November 2008), pp. 8799-8806. by P. Singh, S. A. Shaffer, A. Scherl, et al.C. Holman, R. A. Pfuetzner, T. J. Larson Freeman, S. I. Miller, P. Hernandez, R. D. Appel, D. R. Goodlett posted to interaction proteomics xlink by brianb on 2008-11-26 16:46:42 as
	Formaldehyde-induced histone modifications in vitro. [My Copy] Chemical research in toxicology, Vol. 21, No. 8. (August 2008), pp. 1586-1593. by K. Lu, G. Boysen, L. Gao, L. B. Collins, J. A. Swenberg posted to formaldehyde interaction proteomics by brianb on 2008-11-26 16:38:01 as along with 1 person and 1 group HEIRS HEIRS - Environmental Illness Research
	A modular cross-linking approach for exploring protein interactions. [My Copy] Journal of the American Chemical Society, Vol. 125, No. 9. (5 March 2003), pp. 2416-2425. by M. Trester-Zedlitz, K. Kamada, S. K. Burley, D. Fenyö, B. T. Chait, T. W. Muir posted to interaction proteomics by brianb on 2008-11-26 16:34:48 as
	Mapping cross-linking sites in modified proteins with mass spectrometry: an application to cross-linked hemoglobins. [My Copy] Analytical biochemistry, Vol. 242, No. 1. (1 November 1996), pp. 55-63. by T. Yang, D. R. Horejsh, K. J. Mahan, E. J. Zaluzec, T. J. Watson, D. A. Gage posted to interaction proteomics by brianb on 2008-11-26 16:32:37 as
	Identification of formaldehyde-induced modifications in proteins: reactions with model peptides. [My Copy] The Journal of biological chemistry, Vol. 279, No. 8. (20 February 2004), pp. 6235-6243. by B. Metz, G. F. Kersten, P. Hoogerhout, et al.H. F. Brugghe, H. A. Timmermans, A. de Jong, H. Meiring, J. ten Hove, W. E. Hennink, D. J. Crommelin, W. Jiskoot posted to formaldehyde interaction proteomics by brianb on 2008-11-26 16:30:45 as
	Preoperative isolation of a reversible protein-protein crosslink generated in 50 S subunits of Escherichia coli ribosomes and identification of its components. [My Copy] Analytical biochemistry, Vol. 164, No. 1. (July 1987), pp. 23-30. by H. J. Schönfeld, K. Foulaki posted to interaction proteomics by brianb on 2008-11-25 22:26:56 as
	Assaying protein-DNA interactions in vivo and in vitro using chromatin immunoprecipitation and electrophoretic mobility shift assays. [My Copy] Methods in molecular medicine, Vol. 131 (2007), pp. 123-139. by P. Perez-Romero, M. J. Imperiale posted to antibody interaction topdown by brianb on 2008-11-25 22:22:06 as
	Covalently crosslinked complexes of human immunodeficiency virus type 1 (HIV-1) gp120 and CD4 receptor elicit a neutralizing immune response that includes antibodies selective for primary virus isolates. [My Copy] Virology, Vol. 218, No. 1. (1 April 1996), pp. 258-263. by A. Devico, A. Silver, A. M. Thronton, M. G. Sarngadharan, R. Pal posted to antibody disease interaction proteomics by brianb on 2008-11-25 22:21:02 as
	Monoclonal antibodies raised against covalently crosslinked complexes of human immunodeficiency virus type 1 gp120 and CD4 receptor identify a novel complex-dependent epitope on gp 120. [My Copy] Virology, Vol. 211, No. 2. (20 August 1995), pp. 583-588. by A. L. DeVico, R. Rahman, J. Welch, et al.R. Crowley, P. Lusso, M. G. Sarngadharan, R. Pal posted to antibody interaction proteomics by brianb on 2008-11-25 22:19:41 as
	Identification of protein-protein interactions using in vivo cross-linking and mass spectrometry. [My Copy] Proteomics, Vol. 4, No. 12. (December 2004), pp. 3845-3854. by J. Vasilescu, X. Guo, J. Kast posted to formaldehyde interaction proteomics by brianb on 2008-11-25 22:17:16 as along with 1 person faion
	Computational verification of protein-protein interactions by orthologous co-expression. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by I. Tirosh, N. Barkai posted to bioinformatics interaction network proteomics by brianb on 2008-11-24 21:09:04 as along with 4 people and 2 groups nedwards marcius conkymacro bluto BioinfoCIPF SGU-CIPF
	Quantitative modeling perspectives on the ErbB system of cell regulatory processes. [My Copy] Experimental cell research, Vol. 315, No. 4. (15 February 2009), pp. 717-725. by Matthew J. Lazzara, Douglas A. Lauffenburger posted to cancer diganostic interaction network proteomics by brianb on 2008-11-23 16:35:25 as along with 1 person guhjy
	A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements. [My Copy] Genome research, Vol. 19, No. 2. (17 February 2009), pp. 284-293. by G. Mittler, F. Butter, M. Mann posted to interaction proteomics silac by brianb on 2008-11-19 15:01:25 as along with 4 people and 1 group xingxu absterga skoch3 guhjy Koch_Lab
	Quantitative analysis of HER2-mediated effects on HER2 and epidermal growth factor receptor endocytosis: distribution of homo- and heterodimers depends on relative HER2 levels. [My Copy] The Journal of biological chemistry, Vol. 278, No. 26. (27 June 2003), pp. 23343-23351. by B. S. Hendriks, L. K. Opresko, H. S. Wiley, D. Lauffenburger posted to cancer interaction modeling by brianb on 2008-08-17 22:53:55 as
	Modeling the effects of HER/ErbB1-3 coexpression on receptor dimerization and biological response. [My Copy] Biophys J, Vol. 90, No. 11. (1 June 2006), pp. 3993-4009. by H. Shankaran, H. S. Wiley, H. Resat posted to cancer interaction by brianb on 2008-08-17 22:51:54 as along with 1 person pjasper

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proteomics	670
quantitation	144
electrophoresis	142
bioinformatics	137
interaction	78
disease	73
cancer	70
chromatography	60
diganostic	60
phosphorylation	55
network	55
fdr	43
expression	42
modeling	41
gene	40
formaldehyde	37
tissue	36
genomics	34
statistics	33
ptm	33
pathology	32
signaling	31
fragmentation	31
plasma	22
antibody	22
arrays	21
review	20
fluid	19
sample_prep	19
repository	16
topdown	16
bias	15
lcm	15
algorithm	15
silac	13
sysbio	10
mapping	10
isoform	9
xlink	9
itraq	8
sle	8
dige	7
localization	7
prokaryote	5
diabetes	5
imaging	4
time-course	4
ionization	4
annotation	4
hdx	3
structure	3
food	3
ar	3
apoptosis	3
metabolomics	3
standard	3
population	3
rnai	3
csc	3
glycosylation	3
chip	2
snp	2
splicing	2
subtilis	2
autophagy	2
mrm	2
noise	2
metrics	2
y2h	1
immunology	1
mirna	1
visualization	1
spr	1
db	1
toxicity	1
faims	1
fret	1
antimicrobial	1
matlab	1
opinion	1
circulating	1

brianb's interaction [78 articles] Export

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