brianb's proteomics [at least 200 articles] Export

Recent papers added to brianb's library classified by the tag proteomics. You can also see everyone's proteomics.

	Differential Ion Mobility Separations of Peptides with Resolving Power Exceeding 50 [My Copy] Analytical Chemistry, Vol. 0, No. 0. (0000) by Alexandre A. Shvartsburg, Keqi Tang, Richard D. Smith posted to proteomics by brianb on 2009-11-25 15:19:36 as
	Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography-Tandem Mass Spectrometry. [My Copy] Journal of proteome research (18 November 2009) by David Lee L. Tabb, Lorenzo Vega-Montoto, Paul Rudnick, et al.Asokan Variyath, Amy-Joan J. Ham, David M. Bunk, Lisa Kilpatrick, Dean Billheimer, Ron Blackman, Helene L. Cardasis, Steven A. Carr, Karl R. Clauser, Jacob D. Jaffe, Kevin Kowalski, Thomas A. Neubert, Fred Regnier, Birgit Schilling, Tony Tegeler, Mu Wang, Pei Wang, Jeffrey R. Whiteaker, Lisa Zimmerman, Susan J. Fisher, Bradford Wayne W. Gibson, Christopher R. Kinsinger, Mehdi Mesri, Henry Rodriguez, Stephen E. Stein, Paul Tempst, Amanda Paulovich, Daniel C. Liebler, Cliff Spiegelman posted to standard proteomics by brianb on 2009-11-20 16:08:55 as
	PeptideDepot: Flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Kebing Yu, Arthur R. Salomon posted to repository proteomics by brianb on 2009-11-19 20:51:35 as
	Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomics. [My Copy] Journal of proteome research (16 November 2009) by Henry Lam, Eric Deutsch, Ruedi Aebersold posted to proteomics fdr by brianb on 2009-11-18 19:55:16 as
	MS/MS/MS Reveals False Positive Identification of Histone Serine Methylation [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Junmei Zhang, Yue Chen, Zhihong Zhang, Gang Xing, Joanna Wysocka, Yingming Zhao posted to ptm proteomics fragmentation fdr bias by brianb on 2009-11-17 21:40:21 as
	Shared Peptides in Mass Spectrometry Based Protein Quantification [My Copy] In RECOMB 2'09: Proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology (2009), pp. 356-371. by Banu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna posted to quantitation proteomics by brianb on 2009-11-17 21:21:05 as along with 1 person nedwards
	MCP ups the ante by mandating raw-data deposition [My Copy] Journal of Proteome Research, Vol. 8, No. 11. (6 November 2009), pp. 4887-4888. by Katie Cottingham posted to repository proteomics by brianb on 2009-11-12 18:17:13 as
	Comparative analysis of OFFGel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction [My Copy] PROTEOMICS, Vol. 9999, No. 9999. (2009), NA. by Bruno Manadas, Jane A. English, Kieran J. Wynne, David R. Cotter, Michael J. Dunn posted to proteomics electrophoresis chromatography by brianb on 2009-11-12 18:14:15 as
	Systematic comparison of the human saliva and plasma proteomes [My Copy] PROTEOMICS - CLINICAL APPLICATIONS, Vol. 3, No. 1. (1 January 2009), pp. 116-134. by Weihong Yan, Rolf Apweiler, Brian M. Balgley, et al.Pinmanee Boontheung, Jonathan L. Bundy, Benjamin J. Cargile, Steve Cole, Xueping Fang, Mireya Gonzalez-Begne, Timothy J. Griffin, Fred Hagen, Shen Hu, Lawrence E. Wolinsky, Cheng S. Lee, Daniel Malamud, James E. Melvin, Rajasree Menon, Michael Mueller, Renli Qiao, Nelson L. Rhodus, Joel R. Sevinsky, David States, James L. Stephenson, Shawn Than, John R. Yates, Weixia Yu, Hongwei Xie, Yongming Xie, Gilbert S. Omenn, Joseph A. Loo, David T. Wong posted to proteomics plasma fluid by brianb on 2009-11-10 15:45:17 as along with 1 person nedwards
	An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein biomarkers [My Copy] Mol Cell Proteomics (20 October 2009), M900254-MCP200. by Jeffrey R. Whiteaker, Lei Zhao, Leigh Anderson, Amanda G. Paulovich posted to proteomics plasma mrm antibody by brianb on 2009-11-08 19:55:38 as
	Top-Down Identification of Protein Biomarkers in Bacteria with Unsequenced Genomes [My Copy] Analytical Chemistry, Vol. 0, No. 0. (0000) by Colin Wynne, Catherine Fenselau, Plamen A. Demirev, Nathan Edwards posted to topdown proteomics diganostic by brianb on 2009-11-06 16:22:02 as along with 2 people gjuggler nedwards
	Protein quantification across hundreds of experimental conditions [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 37. (15 September 2009), pp. 15544-15548. by Zia Khan, Joshua S. Bloom, Benjamin A. Garcia, Mona Singh, Leonid Kruglyak posted to quantitation proteomics by brianb on 2009-11-06 16:21:18 as along with 5 people nedwards bennos tmmurali roys GeeSharpMinor
	Methods for combining peptide intensities to estimate relative protein abundance [My Copy] Bioinformatics (5 November 2009), btp610. by Brian Carrillo, Corey Yanofsky, Sylvie Laboissiere, Robert Nadon, Robert E. Kearney posted to quantitation proteomics by brianb on 2009-11-06 16:21:03 as
	GATE: Software for the Analysis and Visualization of High-Dimensional Time-series Expression Data [My Copy] Bioinformatics (5 November 2009), btp628. by Ben D. MacArthur, Alexander Lachmann, Ihor R. Lemischka, Avi Ma'ayan posted to time-course proteomics gene expression bioinformatics by brianb on 2009-11-06 15:53:56 as along with 1 person ngehlenborg
	Edgetic perturbation models of human inherited disorders [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Quan Zhong, Nicolas Simonis, Qian-Ru Li, et al.Benoit Charloteaux, Fabien Heuze, Niels Klitgord, Stanley Tam, Haiyuan Yu, Kavitha Venkatesan, Danny Mou, Venus Swearingen, Muhammed A. Yildirim, Han Yan, Amelie Dricot, David Szeto, Chenwei Lin, Tong Hao, Changyu Fan, Stuart Milstein, Denis Dupuy, Robert Brasseur, David E. Hill, Michael E. Cusick, Marc Vidal posted to proteomics mapping interaction gene by brianb on 2009-11-03 17:11:02 as along with 7 people karthikraman aceol mingzhi phoenixzxl tmmurali roys pedrobeltrao
	Emerging Miniaturized Proteomic Technologies to Study Cell Signaling in Clinical Samples [My Copy] Sci. Signal., Vol. 2, No. 93. (20 October 2009), pe65. by Taranjit S. Gujral, Gavin MacBeath posted to proteomics arrays by brianb on 2009-10-23 17:17:30 as along with 2 people kabookie nzm
	Proteomics strategy for quantitative protein interaction profiling in cell extracts. [My Copy] Nature methods, Vol. 6, No. 10. (13 October 2009), pp. 741-744. by Kirti Sharma, Christoph Weber, Michaela Bairlein, et al.Zoltán Greff, György Kéri, Jürgen Cox, Jesper V. Olsen, Henrik Daub posted to proteomics mapping interaction by brianb on 2009-10-23 17:02:18 as along with 1 person renatomilani
	Comparative analysis to guide quality improvements in proteomics [My Copy] Nature Methods, Vol. 6, No. 10. (01 October 2009), pp. 717-719. by Matthias Mann posted to proteomics metrics by brianb on 2009-10-23 17:01:40 as
	The PSI semantic validator: a framework to check minimum information about a proteomics experiment compliance of proteomics data [My Copy] PROTEOMICS, Vol. 9999, No. 999A. (2009), NA. by Luisa Montecchi-Palazzi, Samuel Kerrien, Florian Reisinger, et al.Bruno Aranda, Andrew R. Jones, Lennart Martens, Henning Hermjakob posted to proteomics by brianb on 2009-10-21 17:16:24 as along with 1 person sjcockell
	Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues [My Copy] PROTEOMICS, Vol. 9, No. 15. (August 2009), pp. 3815-3823. by Maria F. Addis, Alessandro Tanca, Daniela Pagnozzi, et al.Salvatore Crobu, Giuseppe Fanciulli, Paolo Cossu-Rocca, Sergio Uzzau posted to sample_prep proteomics formaldehyde by brianb on 2009-10-21 17:14:35 as along with 1 person guhjy
	2-D PAGE and MS analysis of proteins from formalin-fixed, paraffin-embedded tissues [My Copy] PROTEOMICS, Vol. 9, No. 18. (2009), pp. 4329-4339. by Maria F. Addis, Alessandro Tanca, Daniela Pagnozzi, Stefano Rocca, Sergio Uzzau posted to proteomics formaldehyde electrophoresis by brianb on 2009-10-21 17:14:13 as
	Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomic analyses and evaluation by the CPTAC network. [My Copy] Molecular & cellular proteomics : MCP (16 October 2009) by Paul A. Rudnick, Karl R. Clauser, Lisa E. Kilpatrick, et al.Dmitrii V. Tchekhovskoi, Pedatsur Neta, Niksa Blonder, Dean D. Billheimer, Ronald K. Blackman, David M. Bunk, Helene L. Cardasis, Amy-Joan J. Ham, Jacob D. Jaffe, Christopher R. Kinsinger, Mehdi Mesri, Thomas A. Neubert, Birgit Schilling, David L. Tabb, Tony J. Tegeler, Lorenzo Vega-Montoto, Asokan Mulayath Variyath, Mu Wang, Pei Wang, Jeffrey R. Whiteaker, Lisa J. Zimmerman, Steven A. Carr, Susan J. Fisher, Bradford W. Gibson, Amanda G. Paulovich, Fred E. Regnier, Henry Rodriguez posted to proteomics chromatography by brianb on 2009-10-20 18:16:19 as
	Global histone profiling by LC-FTMS after inhibition and knockdown of deacetylases in human cells. [My Copy] Journal of chromatography. B, Analytical technologies in the biomedical and life sciences (1 October 2009) by Mingxi Li, Lihua Jiang, Neil L. Kelleher posted to ptm proteomics by brianb on 2009-10-16 15:21:52 as
	Empirical Bayes Analysis of Quantitative Proteomics Experiments [My Copy] PLoS ONE, Vol. 4, No. 10. (14 October 2009), e7454. by Adam A. Margolin, Shao-En Ong, Monica Schenone, et al.Robert Gould, Stuart L. Schreiber, Steven A. Carr, Todd R. Golub posted to statistics quantitation proteomics by brianb on 2009-10-16 15:20:56 as along with 3 people and 1 group dandaman rdiaz ppgardne Journal picks
	A dual pressure linear ion trap - Orbitrap instrument with very high sequencing speed [My Copy] Mol Cell Proteomics (14 October 2009), M900375-MCP200. by Jesper V. Olsen, Jae C. Schwartz, Jens Griep-Raming, et al.Michael L. Nielsen, Eugen Damoc, Eduard Denisov, Oliver Lange, Philip Remes, Dennis Taylor, Maurizio Splendore, Eloy R. Wouters, Michael Senko, Alexander Makarov, Matthias Mann, Stevan Horning posted to proteomics fragmentation by brianb on 2009-10-16 15:19:50 as
	Protein Quantification in Label-Free LC-MS Experiments [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Timothy Clough, Melissa Key, Ilka Ott, Susanne Ragg, Gunther Schadow, Olga Vitek posted to statistics quantitation proteomics by brianb on 2009-10-15 22:20:38 as
	Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. [My Copy] Nature, Vol. 460, No. 7256. (6 August 2009), pp. 762-765. by Johan Malmström, Martin Beck, Alexander Schmidt, Vinzenz Lange, Eric W. Deutsch, Ruedi Aebersold posted to quantitation proteomics by brianb on 2009-10-15 20:31:22 as along with 4 people sjcockell roys jbhiatt absterga
	Mass spectrometry-based approaches toward absolute quantitative proteomics. [My Copy] Current genomics, Vol. 9, No. 4. (June 2008), pp. 263-274. by Keiji Kito, Takashi Ito posted to review quantitation proteomics by brianb on 2009-10-15 20:27:13 as
	Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 8. (11 August 2009), pp. 2011-2022. by Samuel L. Volchenboum, Kolbrun Kristjansdottir, Donald Wolfgeher, Stephen J. Kron posted to proteomics fragmentation fdr algorithm by brianb on 2009-10-15 15:53:01 as
	Comprehensive defensin assay for saliva. [My Copy] Analytical chemistry, Vol. 81, No. 2. (15 January 2009), pp. 557-566. by Michael S. Gardner, Megan D. Rowland, Amy Y. Siu, Jonathan L. Bundy, Diane K. Wagener, James L. Stephenson posted to proteomics fluid by brianb on 2009-10-15 15:39:39 as
	Profiling the Glycoforms of the Intact alpha Subunit of Recombinant Human Chorionic Gonadotropin by High-Resolution Capillary Electrophoresis-Mass Spectrometry. [My Copy] Analytical chemistry (9 October 2009) by Dipak Thakur, Tomas Rejtar, Barry L. Karger, et al.Nathaniel J. Washburn, Carlos J. Bosques, Nur S. Gunay, Zachary Shriver, Ganesh Venkataraman posted to proteomics isoform electrophoresis by brianb on 2009-10-13 17:53:50 as
	Perspectives of targeted mass spectrometry for protein biomarker verification. [My Copy] Current opinion in chemical biology (7 October 2009) by Ruth Hüttenhain, Johan Malmström, Paola Picotti, Ruedi Aebersold posted to review quantitation proteomics by brianb on 2009-10-13 17:53:31 as
	Reactome Array: Forging a Link Between Metabolome and Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 252-257. by A. Beloqui, M. E. Guazzaroni, F. Pazos, et al.J. M. Vieites, M. Godoy, O. V. Golyshina, T. N. Chernikova, A. Waliczek, R. Silva-Rocha, Y. Al-ramahi, V. La Cono, C. Mendez, J. A. Salas, R. Solano, M. M. Yakimov, K. N. Timmis, P. N. Golyshin, M. Ferrer posted to proteomics metabolomics genomics by brianb on 2009-10-09 15:37:08 as along with 9 people and 1 group ajsferreira kinestetika renatomilani leliavski michaelbarton abhishek_tiwari TRHvidsten ptrobajo gbloeb Shared Literature Resource of the Microbial Fitness Group - MPI Bremen
	Systematic comparative protein expression profiling of clear cell renal cell carcinoma: A pilot study based on the separation of tissue specimen by two-dimensional electrophoresis [My Copy] Mol Cell Proteomics (14 September 2009), M900168-MCP200. by Rudolf Lichtenfels, Sven P. Dressler, Monica Zobawa, et al.Christian V. Recktenwald, Angelika Ackermann, Derek Atkins, Michael Kersten, Andrea Hesse, Maria Puttkammer, Friedrich Lottspeich, Barbara Seliger posted to tissue quantitation proteomics electrophoresis by brianb on 2009-10-09 15:26:19 as
	One-Pot Shotgun Quantitative Mass Spectrometry Characterization of Histones [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Mariana D. Plazas-Mayorca, Barry M. Zee, Nicolas L. Young, et al.Ian M. Fingerman, Gary LeRoy, Scott D. Briggs, Benjamin A. Garcia posted to sample_prep ptm proteomics by brianb on 2009-10-09 15:25:29 as
	Statistical lower bounds on protein copy number from fluorescence expression images [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2670-2676. by Lee Zamparo, Theodore J. Perkins posted to tissue quantitation proteomics by brianb on 2009-10-09 15:24:04 as along with 1 person roys
	Absolute abundance for the masses [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 825-826. by Christine Vogel, Edward M. Marcotte posted to quantitation proteomics by brianb on 2009-10-09 15:22:48 as along with 2 people sjcockell oelemento
	Avoiding Nonspecific Interactions in Studies of the Plasma Proteome: Practical Solutions to Prevention of Nonspecific Interactions for Label-Free Detection of Low-Abundance Plasma Proteins [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Joanna L. Richens, Elizabeth A. M. Lunt, Daniel Sanger, Graeme McKenzie, Paul O’Shea posted to sample_prep proteomics plasma by brianb on 2009-10-09 15:21:02 as
	Effect of Peptide-to-TiO2 Beads Ratio on Phosphopeptide Enrichment Selectivity [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Qing-run Li, Zhi-bin Ning, Jia-shu Tang, Song Nie, Rong Zeng posted to sample_prep proteomics phosphorylation by brianb on 2009-10-09 15:19:57 as
	Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics [My Copy] PLoS ONE, Vol. 4, No. 10. (6 October 2009), e7310. by Mihaela E. Sardiu, Joshua M. Gilmore, Michael J. Carrozza, et al.Bing Li, Jerry L. Workman, Laurence Florens, Michael P. Washburn posted to quantitation proteomics modeling interaction by brianb on 2009-10-07 17:37:24 as along with 1 person poirel
	Spectrum fusion: using multiple mass spectra for de novo Peptide sequencing. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (August 2009), pp. 1169-1182. by Ritendra Datta, Marshall Bern posted to proteomics fragmentation by brianb on 2009-10-06 20:17:33 as along with 1 person nuin
	Fast and accurate alignment of multiple protein networks. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (22 August 2009), pp. 989-999. by Maxim Kalaev, Vineet Bafna, Roded Sharan posted to proteomics network modeling by brianb on 2009-10-06 20:16:53 as along with 3 people Balou nuin chica
	Application of Slicing of One-Dimensional Gels with Subsequent Slice-by-Slice Mass Spectrometry for the Proteomic Profiling of Human Liver Cytochromes P450 [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Andrey V. Lisitsa, Natalia A. Petushkova, Herbert Thiele, et al.Sergei A. Moshkovskii, Viktor G. Zgoda, Irina I. Karuzina, Aleksey L. Chernobrovkin, Oleg G. Skipenko, Alexander I. Archakov posted to topdown proteomics isoform by brianb on 2009-10-06 20:14:58 as
	Sensitive multiplexed analysis of kinase activities and activity-based kinase identification. [My Copy] Nature biotechnology, Vol. 27, No. 10. (04 October 2009), pp. 933-940. by Kazuishi Kubota, Rana Anjum, Yonghao Yu, et al.Ryan C. Kunz, Jannik N. Andersen, Manfred Kraus, Heike Keilhack, Kumiko Nagashima, Stefan Krauss, Cloud Paweletz, Ronald C. Hendrickson, Adam S. Feldman, Chin-Lee L. Wu, John Rush, Judit Villén, Steven P. Gygi posted to signaling proteomics phosphorylation network by brianb on 2009-10-06 20:02:00 as along with 3 people guhjy renatomilani ptrobajo
	Scanning the Cell Surface Proteome of Cancer Cells and Identification of Metastasis-Associated Proteins Using a Subtractive Immunization Strategy [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Nicolaj Rasmussen, Henrik J. Ditzel posted to proteomics cancer antibody by brianb on 2009-10-02 19:11:17 as
	Global Analysis of Cdk1 Substrate Phosphorylation Sites Provides Insights into Evolution [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1682-1686. by Liam J. Holt, Brian B. Tuch, Judit Villen, Alexander D. Johnson, Steven P. Gygi, David O. Morgan posted to proteomics phosphorylation by brianb on 2009-09-30 01:45:29 as along with 5 people nzm walshtp djkt jjray neils
	Identification of five candidate lung cancer biomarkers by proteomic analysis of conditioned media of four lung cancer cell lines. [My Copy] Molecular & cellular proteomics : MCP (23 September 2009) by Chris Planque, Vathany Kulasingan, Chris R. Smith, Karen Reckamp, Lee Goodglick, Eleftherios P. Diamandis posted to proteomics cancer by brianb on 2009-09-30 01:43:37 as
	Directed mass spectrometry: towards hypothesis-driven proteomics. [My Copy] Current opinion in chemical biology (21 September 2009) by Alexander Schmidt, Manfred Claassen, Ruedi Aebersold posted to review quantitation proteomics by brianb on 2009-09-30 01:40:27 as
	Peroxisomes from the Heavy Mitochondrial Fraction: Isolation by Zonal Free Flow Electrophoresis and Quantitative Mass Spectrometrical Characterization [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Markus Islinger, Ka W. Li, Maarten Loos, et al.Sven Liebler, Sabine Angermüller, Christoph Eckerskorn, Gerhard Weber, Afsaneh Abdolzade, Alfred Völkl posted to proteomics electrophoresis by brianb on 2009-09-30 01:39:54 as
	Identification of Protein Clusters Predictive of Response to Chemotherapy in Breast Cancer Patients [My Copy] Journal of Proteome Research, Vol. 0, No. 0. (0000) by Laura Cortesi, Andrea Barchetti, Elisabetta De Matteis, et al.Elena Rossi, Lara Della Casa, Luigi Marcheselli, Giovanni Tazzioli, Maria G. Lazzaretti, Guido Ficarra, Massimo Federico, Anna Iannone posted to proteomics electrophoresis disease diganostic cancer by brianb on 2009-09-30 01:27:46 as

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proteomics	664
electrophoresis	142
quantitation	141
bioinformatics	137
interaction	78
disease	73
cancer	69
diganostic	60
chromatography	59
phosphorylation	55
network	54
fdr	42
expression	41
modeling	41
gene	39
formaldehyde	37
tissue	36
genomics	34
statistics	33
pathology	32
ptm	32
fragmentation	31
signaling	31
antibody	22
plasma	22
arrays	21
review	20
fluid	19
sample_prep	19
repository	16
topdown	16
algorithm	15
bias	15
lcm	15
silac	13
sysbio	10
isoform	9
mapping	9
sle	8
xlink	8
itraq	7
localization	7
dige	6
diabetes	5
prokaryote	5
annotation	4
imaging	4
ionization	4
time-course	4
apoptosis	3
ar	3
csc	3
food	3
glycosylation	3
hdx	3
metabolomics	3
population	3
rnai	3
structure	3
autophagy	2
chip	2
metrics	2
mrm	2
noise	2
snp	2
splicing	2
standard	2
subtilis	2
antimicrobial	1
circulating	1
db	1
faims	1
fret	1
immunology	1
matlab	1
mirna	1
opinion	1
spr	1
toxicity	1
y2h	1

brianb's proteomics [at least 200 articles] Export

brianb's tags