brunocontreras's library 122 articles Export

	Novel use of a genetic algorithm for protein structure prediction: searching template and sequence alignment space [My Copy] Proteins, Vol. 53 Suppl 6 (2003), 424-9. by B. Contreras-Moreira, P. W. Fitzjohn, M. Offman, G. R. Smith, P. A. Bates posted to tertiary structure sites-genetics sequence proteins-chemistry-genetics protein molecular models humans homology file-import-09-11-28 data computational biology-methods binding bacterial amino algorithms acid by brunocontreras on 2009-11-28 20:45:35 as
	A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes [My Copy] J Med Chem, Vol. 48, No. 7. (2005), 2325-35. by C. Zhang, S. Liu, Q. Zhu, Y. Zhou posted to thermodynamics statistical proteins-chemistry protein molecular models ligands intelligence file-import-09-11-28 dna-chemistry conformation binding artificial algorithms by brunocontreras on 2009-11-28 20:26:49 as
	Advances in homology protein structure modeling [My Copy] Current protein & peptide science, Vol. 7, No. 3. (2006), 217-27. by Z. Xiang posted to structure-activity structural sequence relationship proteins-chemistry-metabolism protein molecular models humans homology file-import-09-11-28 conformation computational biology animals alignment by brunocontreras on 2009-11-28 20:26:49 as
	DNA recognition by Cys2His2 zinc finger proteins [My Copy] Annu Rev Biophys Biomol Struct, Vol. 29 (2000), 183-212. by S. A. Wolfe, L. Nekludova, C. O. Pabo posted to zinc transcription therapy sequence protein peptide molecular models library humans histidine-chemistry gene fingers file-import-09-11-28 factors-chemistry-metabolism dna-metabolism data cystine-chemistry binding animals amino acid by brunocontreras on 2009-11-28 20:26:49 as
	Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes [My Copy] Structure, Vol. 9, No. 8. (2001), 717-23. by S. A. Wolfe, R. A. Grant, M. Elrod-Erickson, C. O. Pabo posted to zinc tata sites sequence protein molecular models homology histidine-chemistry fingers file-import-09-11-28 dna-metabolism data cysteine-chemistry box binding amino acid by brunocontreras on 2009-11-28 20:26:49 as
	DBD--taxonomically broad transcription factor predictions: new content and functionality [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (2008), D88-92. by D. Wilson, V. Charoensawan, S. K. Kummerfeld, S. A. Teichmann posted to transcription tertiary structure proteomics proteins-chemistry protein markov internet humans file-import-09-11-28 factors-chemistry-classification-genetics dna-binding databases chains animals by brunocontreras on 2009-11-28 20:26:49 as
	P22 c2 repressor-operator complex: mechanisms of direct and indirect readout [My Copy] Biochemistry, Vol. 47, No. 8. (2008), 2325-38. by D. Watkins, C. Hsiao, K. K. Woods, G. B. Koudelka, L. D. Williams posted to x-ray water-pharmacology tertiary techniques-methods substrate structure specificity sites sequence repressor proteins-chemistry-metabolism protein pairing-physiology nucleic molecular models file-import-09-11-28 dna-chemistry-metabolism dna-binding crystallography conformation biosensing binding base acid by brunocontreras on 2009-11-28 20:26:49 as
	PISCES: a protein sequence culling server [My Copy] Bioinformatics, Vol. 19, No. 12. (2003), 1589-91. by G. Wang, R. L. Dunbrack posted to systems storage software sequence retrieval-methods protein-methods protein methodologies management information homology file-import-09-11-28 databases database conserved computing and analysis amino alignment-methods algorithms acid by brunocontreras on 2009-11-28 20:26:49 as
	C-H...O hydrogen bonding in biology [My Copy] Trends in biochemical sciences, Vol. 22, No. 3. (1997), 97-102. by M. C. Wahl, M. Sundaralingam posted to water-chemistry proteins-chemistry protein oxygen-chemistry nucleic molecular models hydrogen file-import-09-11-28 conformation carbon-chemistry carbohydrates-chemistry bonding acids-chemistry by brunocontreras on 2009-11-28 20:26:49 as
	Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies [My Copy] J Mol Biol, Vol. 281, No. 5. (1998), 827-42. by J. van Helden, B. Andre, J. Collado-Vides posted to transcription sites-genetics sequences saccharomyces regulatory regulation proteins-genetics oligodeoxyribonucleotides-analysis nucleic networks genome genes gene fungal-genetics fungal file-import-09-11-28 factors-metabolism expression dna-binding computers computer communication cerevisiae-genetics binding algorithms acid-genetics by brunocontreras on 2009-11-28 20:26:49 as
	Regulatory sequence analysis tools [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (2003), 3593-6. by J. van Helden posted to user-computer transcription software sites sequences sequence regulatory region nucleic internet interface graphics genome flanking file-import-09-11-28 factors-metabolism dna-methods computer binding analysis algorithms acid 5 by brunocontreras on 2009-11-28 20:26:49 as
	The structural basis of acyl coenzyme A-dependent regulation of the transcription factor FadR [My Copy] Embo J, Vol. 20, No. 8. (2001), 2041-50. by D. M. van Aalten, C. C. DiRusso, J. Knudsen posted to x-ray support sites sequence research repressor regulation proteins-chemistry-genetics protein non-us motifs molecular models govt gene file-import-09-11-28 expression dna-chemistry dna-binding data crystallography conformation coenzyme binding bacterial amino allosteric acyl acid a-chemistry-metabolism by brunocontreras on 2009-11-28 20:26:49 as
	Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12 [My Copy] Bioinformatics (Oxford, England), Vol. 14, No. 5. (1998), 391-400. by D. Thieffry, H. Salgado, A. M. Huerta, J. Collado-Vides posted to sites-genetics regulon regulator proteins-genetics genome genes file-import-09-11-28 factual escherichia databases computational coli-genetics biology binding bacterial by brunocontreras on 2009-11-28 20:26:49 as
	Comparative footprinting of DNA-binding proteins [My Copy] Bioinformatics, Vol. 22, No. 14. (2006), e74-80. by B. Contreras-Moreira, J. Collado-Vides posted to sites simulation proteins-chemistry protein-methods protein models homology footprinting-methods dna-methods dna-chemistry dna-binding computer chemical binding analysis algorithms uracil transcription thymine sequence repressor regions proteins-genetics-metabolism operator mutation molecular genetics file-import-09-11-28 factors-metabolism dna-genetics-metabolism data amino acid by brunocontreras on 2009-11-28 20:26:49 as
	Context-dependent regulation of Hox protein functions by CK2 phosphorylation sites [My Copy] Dev Genes Evol, Vol. 218, No. 6. (2008), 321-32. by O. Taghli-Lamallem, C. Hsia, M. Ronshaugen, W. McGinnis posted to transcription thorax-embryology sites sequence regulation recombinant proteins-genetics-metabolism proteins-genetics proteins-chemistry-genetics-metabolism-physiology phosphorylation patterning-genetics nonmammalian molecular modified melanogaster-embryology-genetics-metabolism kinase ii-metabolism homology homeodomain genetically gene fusion file-import-09-11-28 factors-genetics expression embryo drosophila developmental data chimera-genetics casein body binding animals amino acid by brunocontreras on 2009-11-28 20:26:49 as
	OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer [My Copy] Nat Genet, Vol. 34, No. 3. (2003), 337-43. by G. C. Sellar, K. P. Watt, G. J. Rabiasz, et al.E. A. Stronach, L. Li, E. P. Miller, C. E. Massie, J. Miller, B. Contreras-Moreira, D. Scott, I. Brown, A. R. Williams, P. A. Bates, J. F. Smyth, H. Gabra posted to tumor transfection transcriptase tissue suppressor-physiology studies site-directed rna reverse reaction proteins-genetics proteins-antagonists polymerase pair ovarian of nude nerve neoplasms-genetics neoplasms mutation-genetics mutagenesis molecules-antagonists mice methylation messenger-metabolism loss islands inhibitors-pharmacology inhibitors-genetics-metabolism humans human heterozygosity glandular genes female epithelial-genetics enzyme dna-genetics-metabolism dna cultured-transplantation cpg chromosomes chain cells case-control carrier breast azacitidine-pharmacology animals and adhesion 11-genetics zinc transcription surface-chemistry stereoisomerism sites simulation sequence receptors proteins-chemistry protein motifs molecular models hydrogen helix-loop-helix fingers file-import-09-11-28 factors-chemistry dna-chemistry dna-binding data computer chemical cell bonding binding base amino acid by brunocontreras on 2009-11-28 20:26:49 as
	In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling [My Copy] J Mol Biol, Vol. 328, No. 3. (2003), 593-608. by B. Contreras-Moreira, P. W. Fitzjohn, P. A. Bates posted to tertiary results reproducibility proteins-chemistry-genetics of mutation models homology evolution directed alignment-methods algorithms zinc transcription tfiiia structure-activity structure sites sequences sequence secondary repressor relationship regulatory proteins-chemistry-metabolism proteins protein nucleic molecular fingers file-import-09-11-28 factors-chemistry-metabolism factor drosophila dna-chemistry-metabolism dna-binding data crystallization conformation binding arginine-metabolism amino acid by brunocontreras on 2009-11-28 20:26:49 as
	A framework for the DNA-protein recognition code of the probe helix in transcription factors: the chemical and stereochemical rules [My Copy] Structure, Vol. 2, No. 4. (1994), 317-26. by M. Suzuki posted to x-ray transcription tertiary substrate structure specificity sites sequence protein nucleic molecular hydrogen file-import-09-11-28 factors-chemistry-metabolism dna-chemistry-metabolism data crystallography conformation bonding binding base amino acids-chemistry acid by brunocontreras on 2009-11-28 20:26:49 as
	Role of CtBP in transcriptional repression by the Drosophila giant protein [My Copy] Developmental biology, Vol. 239, No. 2. (2001), 229-40. by B. Strunk, P. Struffi, K. Wright, et al.B. Pabst, J. Thomas, L. Qin, D. N. Arnosti posted to transgenes transcription tertiary structure situ sequence repressor reporter regulation proteins-metabolism-physiology proteins protein plasmids-metabolism phosphoproteins-metabolism-physiology oxidoreductases operon nucleic mutation motifs molecular lac in hybridization homology genetics genetic genes gene file-import-09-11-28 expression enhancer elements drosophila dna-binding developmental data conserved binding base animals amino alcohol acid by brunocontreras on 2009-11-28 20:26:49 as
	TFmodeller: comparative modelling of protein-DNA complexes [My Copy] Bioinformatics, Vol. 23, No. 13. (2007), 1694-6. by B. Contreras-Moreira, P. A. Branger, J. Collado-Vides posted to simulation proteins-chemistry protein-methods dna-chemistry dna-binding databases computer chemical analysis theoretical systems sites sequence receptor proteins-metabolism protein neoplasm molecular models information file-import-09-11-28 dna-metabolism data cyclic carrier binding base amp algorithms by brunocontreras on 2009-11-28 20:26:49 as
	An efficient conformational sampling method for homology modeling [My Copy] Proteins, Vol. 71, No. 1. (2008), 175-88. by R. Han, A. Leo-Macias, D. Zerbino, U. Bastolla, B. Contreras-Moreira, A. R. Ortiz posted to sequence proteins-chemistry-genetics protein molecular models methods homology evolution databases conformation computational biology-methods amino acid sites research-history proteins-history-metabolism history file-import-09-11-28 dna-binding dna-analysis-history century binding 20th by brunocontreras on 2009-11-28 20:26:49 as
	Structure of the Wilms tumor suppressor protein zinc finger domain bound to DNA [My Copy] J Mol Biol, Vol. 372, No. 5. (2007), 1227-45. by R. Stoll, B. M. Lee, E. W. Debler, et al.J. H. Laity, I. A. Wilson, H. J. Dyson, P. E. Wright posted to zinc x-ray wt1 wilms tumor tertiary substances structure sequence resonance proteins-chemistry-metabolism protein nucleic nuclear molecular models magnetic macromolecular humans genes fingers file-import-09-11-28 dna-chemistry-metabolism data crystallography conformation biomolecular amino alignment acid by brunocontreras on 2009-11-28 20:26:49 as
	Homing endonuclease structure and function [My Copy] Quarterly reviews of biophysics, Vol. 38, No. 1. (2005), 49-95. by B. L. Stoddard posted to splicing sequence proteins-chemistry protein molecular models introns humans genetic file-import-09-11-28 engineering endonucleases-chemistry-genetics-physiology dna-chemistry dna-binding data conformation biophysics-methods biological binding animals amino alternative acid by brunocontreras on 2009-11-28 20:26:49 as
	Interconversion of the DNA-binding specificities of two related transcription regulators, CRP and FNR [My Copy] Mol Microbiol, Vol. 4, No. 11. (1990), 1831-8. by S. Spiro, K. L. Gaston, A. I. Bell, R. E. Roberts, S. J. Busby, J. R. Guest posted to substrate specificity sites site-directed sequence regulation receptors receptor proteins-genetics-metabolism proteins protein plasmids mutagenesis molecular iron-sulfur genes gene file-import-09-11-28 expression escherichia deletion data cyclic conformation coli-genetics-metabolism coli chromosome carrier binding base bacterial amp-genetics-metabolism amp amino acid by brunocontreras on 2009-11-28 20:26:49 as
	Crystal structure of the met repressor-operator complex at 2.8 A resolution reveals DNA recognition by beta-strands [My Copy] Nature, Vol. 359, No. 6394. (1992), 387-93. by W. S. Somers, S. E. Phillips posted to support sequence research repressor regulator regulation regions proteins-chemistry-metabolism proteins operator non-us molecular methionine-biosynthesis govt genetics-genetics genes gene file-import-09-11-28 expression escherichia dna data crystallography conformation coli-genetics coli base bacterial-physiology bacterial-chemistry bacterial by brunocontreras on 2009-11-28 20:26:49 as
	Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins [My Copy] J Mol Biol, Vol. 213, No. 4. (1990), 859-83. by M. J. Sippl posted to simulation sequence ribonucleases protein physical peptides oligopeptides molecular insect hormones hemoglobins file-import-09-11-28 data conformation computer chemistry amino acid by brunocontreras on 2009-11-28 20:26:49 as
	Structural alignment of protein--DNA interfaces: insights into the determinants of binding specificity [My Copy] Journal of molecular biology, Vol. 345, No. 5. (2005), 1027-45. by T. W. Siggers, A. Silkov, B. Honig posted to tertiary substrate structure-activity structure specificity sites sequence relationship proteins-chemistry-classification-genetics-metabolism protein motifs molecular models file-import-09-11-28 dna-chemistry-metabolism data binding amino alignment acid by brunocontreras on 2009-11-28 20:26:49 as
	Structure-based prediction of C2H2 zinc-finger binding specificity: sensitivity to docking geometry [My Copy] Nucleic Acids Res, Vol. 35, No. 4. (2007), 1085-97. by T. W. Siggers, B. Honig posted to zinc transcription structure sites proteins-chemistry-metabolism molecular models fingers file-import-09-11-28 factors-chemistry-metabolism dna-binding computational biology-methods binding algorithms by brunocontreras on 2009-11-28 20:26:49 as
	Specificity of protein-DNA recognition revealed by structure-based potentials: symmetric/asymmetric and cognate/non-cognate binding [My Copy] J Mol Biol, Vol. 322, No. 5. (2002), 907-15. by S. Selvaraj, H. Kono, A. Sarai posted to viral tertiary subunits structure saccharomyces repressor receptors proteins-genetics-metabolism proteins-chemistry-genetics-metabolism proteins protein nucleic molecular models metalloproteins-genetics-metabolism kinases-genetics-metabolism glucocorticoid-genetics-metabolism file-import-09-11-28 endonucleases-genetics-metabolism dna-genetics-metabolism dna-binding dimerization conformation cerevisiae binding acid by brunocontreras on 2009-11-28 20:26:49 as
	Sequence-specific recognition of double helical nucleic acids by proteins [My Copy] Proc Natl Acad Sci U S A, Vol. 73, No. 3. (1976), 804-8. by N. C. Seeman, J. M. Rosenberg, A. Rich posted to structure-activity relationship proteins-metabolism nucleic models hydrogen file-import-09-11-28 conformation bonding biological acids-metabolism acid by brunocontreras on 2009-11-28 20:26:49 as
	Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices [My Copy] Science, Vol. 266, No. 5186. (1994), 763-70. by M. A. Schumacher, K. Y. Choi, H. Zalkin, R. G. Brennan posted to x-ray us support structure sites sequence secondary research repressor regions proteins-chemistry-genetics-metabolism proteins protein phs operator nucleic non-us molecular models hypoxanthines-metabolism hypoxanthine hydrogen graphics govt genetics file-import-09-11-28 escherichia dna-chemistry-metabolism dna-binding data crystallography conformation computer coli bonding binding base bacterial amino acid by brunocontreras on 2009-11-28 20:26:49 as
	Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees [My Copy] Science, Vol. 253, No. 5023. (1991), 1001-7. by S. C. Schultz, G. C. Shields, T. A. Steitz posted to x-ray us support sites sequence rna research receptor protein-chemistry-metabolism protein polymerases-metabolism phs nucleic non-us molecular models hydrogen govt file-import-09-11-28 escherichia dna-directed dna diffraction-methods data cyclic conformation coli-metabolism bonding binding base bacterial-chemistry-metabolism amp acid by brunocontreras on 2009-11-28 20:26:49 as
	A link between sequence conservation and domain motion within the AAA+ family [My Copy] J Struct Biol, Vol. 146, No. 1-2. (2004), 189-204. by G. R. Smith, B. Contreras-Moreira, X. Zhang, P. A. Bates posted to triphosphatases-chemistry-classification tertiary-drug structure structural simulation quaternary protein pliability nucleotides-chemistry-pharmacology motion homology effects conserved computer adenosine viral tryptophan-genetics t-phages-genetics statistics sites serine sequence rna ribosomes-metabolism repressor regions proteins-genetics proteins polymerases-genetics operon operator lac genetics file-import-09-11-28 escherichia endopeptidases dna-directed dna-binding dna coli-genetics-metabolism binding base bacterial-genetics-metabolism bacterial by brunocontreras on 2009-11-28 20:26:49 as
	Integration of bioinformatics and computational biology to understand protein-DNA recognition mechanism [My Copy] J Bioinform Comput Biol, Vol. 3, No. 1. (2005), 169-83. by A. Sarai, J. Siebers, S. Selvaraj, M. M. Gromiha, H. Kono posted to transcription systems substances-chemistry structure-activity statistical sites sequence relationship proteins-chemistry protein molecular models macromolecular integration file-import-09-11-28 factors-chemistry dna-chemistry dna-binding computational chemical biology-methods binding analysis-methods by brunocontreras on 2009-11-28 20:26:49 as
	Protein-DNA recognition patterns and predictions [My Copy] Annu Rev Biophys Biomol Struct, Vol. 34 (2005), 379-98. by A. Sarai, H. Kono posted to zinc thermodynamics specificity software sensitivity proteomics-methods proteins-chemistry protein nucleic molecular models genomics genome fungal fingers file-import-09-11-28 dna-chemistry dna-binding conformation biophysics-methods binding and adenine-chemistry acid by brunocontreras on 2009-11-28 20:26:49 as
	RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (2006), D394-7. by H. Salgado, S. Gama-Castro, M. Peralta-Gil, et al.E. Diaz-Peredo, F. Sanchez-Solano, A. Santos-Zavaleta, I. Martinez-Flores, V. Jimenez-Jacinto, C. Bonavides-Martinez, J. Segura-Salazar, A. Martinez-Antonio, J. Collado-Vides posted to user-computer transcription software regulon regulation operon k12-genetics-growth internet interface genome genetic gene file-import-09-11-28 expression escherichia development databases coli bacterial by brunocontreras on 2009-11-28 20:26:49 as
	An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure [My Copy] Proteins, Vol. 66, No. 2. (2007), 359-74. by T. A. Robertson, G. Varani posted to transcription sites-genetics proteins-chemistry-genetics-metabolism protein nucleic mutation molecular models file-import-09-11-28 factors-chemistry-metabolism dna-chemistry-metabolism dna-binding conformation chemical binding acid by brunocontreras on 2009-11-28 20:26:48 as
	Correlated evolutionary pressure at interacting transcription factors and DNA response elements can guide the rational engineering of DNA binding specificity [My Copy] Journal of molecular biology, Vol. 350, No. 3. (2005), 402-15. by M. Raviscioni, P. Gu, M. Sattar, A. J. Cooney, O. Lichtarge posted to transcription thermodynamics statistical software response receptors proteins-chemistry protein phylogeny nucleic nuclear-chemistry mutational mutation molecular models humans genomics-methods genetic file-import-09-11-28 factors-chemistry-metabolism evolution estrogen-metabolism entropy engineering-methods elements dna-chemistry-genetics-metabolism dna-binding dna cytoplasmic conformation computational biology binding animals and analysis acid by brunocontreras on 2009-11-28 20:26:48 as
	Analyzing protein-DNA recognition mechanisms [My Copy] Structure, Vol. 12, No. 1. (2004), 113-22. by G. Paillard, R. Lavery posted to x-ray sites simulation sequence proteins-chemistry nucleic molecular models hydrogen file-import-09-11-28 dna-binding data crystallography conformation computer bonding binding base algorithms acid by brunocontreras on 2009-11-28 20:26:48 as
	Transcription factors: structural families and principles of DNA recognition [My Copy] Annu Rev Biochem, Vol. 61 (1992), 1053-95. by C. O. Pabo, R. T. Sauer posted to zippers-physiology zinc transcription steroid-chemistry sites sequence receptors proteins-chemistry protein molecular models leucine fingers-physiology file-import-09-11-28 factors-chemistry dna-binding data conformation binding animals amino acid by brunocontreras on 2009-11-28 20:26:48 as
	Protein-DNA recognition [My Copy] Annu Rev Biochem, Vol. 53 (1984), 293-321. by C. O. Pabo, R. T. Sauer posted to viral-genetics viral transcription sequence repressor regulation receptors proteins-genetics proteins operon molecular models lambda-genetics lac genetic gene file-import-09-11-28 factors-genetics expression escherichia dna-binding dna cyclic coli-genetics base bacteriophage bacterial-genetics amp-genetics amino acid by brunocontreras on 2009-11-28 20:26:48 as
	Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition? [My Copy] J Mol Biol, Vol. 301, No. 3. (2000), 597-624. by C. O. Pabo, L. Nekludova posted to zinc x-ray transcription theoretical spectroscopy simulation resonance proteins-chemistry-metabolism mutagenesis molecular models magnetic fingers file-import-09-11-28 factual factors-chemistry-metabolism evolution dna-chemistry-metabolism dna-binding databases crystallography computer by brunocontreras on 2009-11-28 20:26:48 as
	Crystal structure of trp repressor/operator complex at atomic resolution [My Copy] Nature, Vol. 335, No. 6188. (1988), 321-9. by Z. Otwinowski, R. W. Schevitz, R. G. Zhang, et al.C. L. Lawson, A. Joachimiak, R. Q. Marmorstein, B. F. Luisi, P. B. Sigler posted to us tryptophan-genetics transcription support research repressor regions proteins protein phs operator nucleic non-us molecular models govt genetics file-import-09-11-28 factors crystallography conformation binding acid by brunocontreras on 2009-11-28 20:26:48 as
	Functional recycling of C2 domains throughout evolution: a comparative study of synaptotagmin, protein kinase C and phospholipase C by sequence, structural and modelling approaches [My Copy] J Mol Biol, Vol. 333, No. 3. (2003), 621-39. by J. L. Jimenez, G. R. Smith, B. Contreras-Moreira, et al.J. G. Sgouros, F. A. Meunier, P. A. Bates, G. Schiavo posted to type tissue tertiary synaptotagmins structure proteomics proteins-chemistry proteins protein phospholipases-chemistry nerve molecular models membrane kinase humans homology glycoproteins-chemistry evolution data conserved calcium-binding c-chemistry c animals amino acid software sites sequence regions promoter genetics genes file-import-09-11-28 escherichia dna-metabolism dna composition coli binding base bacterial-metabolism bacterial by brunocontreras on 2009-11-28 20:26:48 as
	DNA sequence-dependent deformability deduced from protein-DNA crystal complexes [My Copy] Proc Natl Acad Sci U S A, Vol. 95, No. 19. (1998), 11163-8. by W. K. Olson, A. A. Gorin, X. J. Lu, L. M. Hock, V. B. Zhurkin posted to pyrimidines-chemistry purines-chemistry proteins-chemistry protein nucleic molecular models file-import-09-11-28 dna-chemistry dimerization conformation binding acid by brunocontreras on 2009-11-28 20:26:48 as
	Topology of Type II REases revisited; structural classes and the common conserved core [My Copy] Nucleic acids research, Vol. 35, No. 7. (2007), 2227-37. by M. Y. Niv, D. R. Ripoll, J. A. Vila, et al.A. Liwo, E. S. Vanamee, A. K. Aggarwal, H. Weinstein, H. A. Scheraga posted to type structure-activity structure site-specific-chemistry-classification secondary relationship protein molecular models ii file-import-09-11-28 deoxyribonucleases by brunocontreras on 2009-11-28 20:26:48 as
	SCOP: a structural classification of proteins database for the investigation of sequences and structures [My Copy] J Mol Biol, Vol. 247, No. 4. (1995), 536-40.. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted to support sequence proteins-chemistry-classification protein non-us govt folding file-import-09-11-28 factual databases analysis amino acid by brunocontreras on 2009-11-28 20:26:48 as
	Connecting protein structure with predictions of regulatory sites [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 17. (2007), 7068-73. by A. V. Morozov, E. D. Siggia posted to zippers transcription tertiary structure-activity structure structural sequences sequence saccharomyces relationship regulatory regulation proteins-chemistry protein nucleic multiprotein motifs molecular leucine intergenic-genetics homology helix-loop-helix gene fungal-metabolism fungal file-import-09-11-28 factors-metabolism expression dna dimerization data complexes-metabolism cerevisiae-chemistry-genetics cerevisiae binding base amino acid by brunocontreras on 2009-11-28 20:26:48 as
	Protein-DNA binding specificity predictions with structural models [My Copy] Nucleic Acids Res, Vol. 33, No. 18. (2005), 5781-98. by A. V. Morozov, J. J. Havranek, D. Baker, E. D. Siggia posted to transcription sites sequence proteins-chemistry-metabolism protein nucleic models file-import-09-11-28 factors-chemistry-metabolism dna-chemistry-metabolism dna-binding consensus conformation computational chemical biology-methods binding base acid by brunocontreras on 2009-11-28 20:26:48 as
	3D-footprint: a database for the structural analysis of protein-DNA complexes [My Copy] Nucleic Acids Res, Vol. 64, No. 3. (2009), 908-10. by B. Contreras-Moreira posted to sites sequence models humans genetic fragility-genetics fragile file-import-09-11-28 factual dna databases chromosome banding analysis by brunocontreras on 2009-11-28 20:26:48 as

Note: You may cite this page as: http://www.citeulike.org/user/brunocontreras

Result page: 1 2 3 Next

file-import-09-11-28	121
molecular	90
models	80
protein	78
binding	76
acid	73
sequence	72
dna-binding	55
conformation	53
amino	50
sites	49
transcription	47
nucleic	47
data	45
base	43
structure	34
proteins-chemistry	31
escherichia	30
bacterial	29
databases	26
algorithms	26
dna	26
crystallography	25
animals	25
gene	24
computational	23
x-ray	23
computer	22
homology	22
regulation	22
expression	21
humans	21
proteins	21
tertiary	21
bonding	20
software	20
hydrogen	20
repressor	20
evolution	20
analysis	20
genetic	19
dna-chemistry	19
regions	19
coli	18
zinc	18
simulation	17
genetics	16
dna-chemistry-metabolism	16
proteins-chemistry-metabolism	16
proteins-chemistry-genetics-metabolism	15
fingers	14
sites-genetics	14
regulatory	14
relationship	13
biology-methods	13
genes	13
govt	13
support	13
internet	13
structure-activity	13
secondary	12
chemical	12
promoter	11
non-us	11
research	11
biology	10
conserved	10
factors-chemistry-metabolism	10
thermodynamics	10
coli-genetics	10
specificity	10
factors-metabolism	9
phylogeny	9
dna-metabolism	9
sequences	9
genome	9
proteins-chemistry-genetics	9
alignment	9
dimerization	9
factual	9
dna-chemistry-genetics-metabolism	8
motifs	8
cyclic	8
protein-methods	8
proteins-genetics	8
substrate	8
operator	8
proteins-metabolism	8
us	7
and	7
factors-genetics	7
phs	7
type	7
acids-chemistry	7
receptor	7
amp	7
statistical	7
bacterial-genetics	7
receptors	7
dna-methods	7
deoxyribonucleases	6
ii	6
saccharomyces	6
factors	6
proteins-genetics-metabolism	6
coli-genetics-metabolism	6
of	6
carrier	6
factors-chemistry	6
dna-genetics-metabolism	5
reproducibility	5
genomics-methods	5
electrostatics	5
results	5
user-computer	5
interface	5
genetics-genetics	5
drosophila	5
alignment-methods	5
biological	5
mutation	5
pairing	5
networks	5
macromolecular	5
theoretical	4
rna	4
water-chemistry	4
structural	4
recombinant	4
mutagenesis	4
resonance	4
magnetic	4
graphics	4
regulon	4
response	4
elements	4
acid-genetics	4
operon	4
duplication	4
information	4
viral	3
cerevisiae	3
numerical	3
dna-directed	3
crystallization	3
quaternary	3
sequence-genetics	3
k12-genetics	3
mice	3
factors-chemistry-genetics-metabolism	3
nuclear	3
folding	3
cerevisiae-genetics	3
chromosome	3
fungal	3
lac	3
substances	3
bacterial-chemistry	3
systems	3
genetic-genetics	3
storage	3
mutation-genetics	3
fingers-genetics	3
as	2
proteomics	2
initiation	2
transcriptional-genetics	2
cluster	2
chain	2
library	2
biophysics-methods	2
footprinting-methods	2
bacterial-chemistry-metabolism	2
likelihood	2
reaction	2
database	2
fungal-genetics	2
proteins-chemistry-classification	2
regulator	2
transduction-physiology	2
deoxyribonuclease	2
growth	2
proteomics-methods	2
box	2
site	2
oligodeoxyribonucleotides-chemistry	2
factors-chemistry-genetics	2
computers	2
helix-loop-helix	2
comparative	2
allosteric	2
sigma	2
artificial	2
histidine-chemistry	2
solvents-chemistry	2
genomics	2
sensitivity	2
protein-genetics-metabolism	2
integration	2
site-directed	2
developmental	2
history	2
markov	2
engineering	2
signal	2
site-specific-chemistry-metabolism	2
subtilis-genetics-metabolism	2
early	2
point	2
oxygen-chemistry	2
topic	2
microarray	2
leucine	2
polymerase	2
factor	2
ribonucleic	2
site-specific-chemistry-genetics-metabolism	2
endopeptidases	2
purification	2
allocation	2
spectroscopy	2
functions	2
random	2
consensus	2
study	2
factor-metabolism	2
composition	2
retrieval-methods	2
tissue	2
dna-chemistry-genetics	2
substitution-genetics	2
homeodomain	2
c	2
recombination	2
coli-chemistry-genetics	2
kinase	2
nerve	2
substances-chemistry	2
dna-genetics	2
bacillus	2
biomolecular	2
water-metabolism	2
tumor	2
acids	2
intelligence	2
bacterial-genetics-metabolism	2
human	2
tryptophan-genetics	2
cell	2
peptide	2
century	2
chains	2
serine	2
deletion	2
statistics	2
tata	2
trans-activation	2
20th	2
bacterial-metabolism	1
factors-physiology	1
terminology	1
plant	1
21st	1
chimera-genetics	1
steroid-chemistry	1
triphosphatases-chemistry-classification	1
arabidopsis-chemistry	1
pattern	1
recognition	1
oligodeoxyribonucleotides-analysis	1
roots-microbiology	1
polymorphism	1
calcium-binding	1
neoplasms-genetics	1
ribosomes-metabolism	1
zipper	1
ligands	1
intergenic-genetics	1
surface-metabolism	1
domain	1
reporter	1
properties	1
melanogaster-genetics	1
inhibitors-pharmacology	1
rodentia-genetics	1
influenzae-enzymology	1
proteins-chemistry-classification-physiology	1
proteins-chemistry-classification-genetics-metabolism	1
glycosides-chemistry-metabolism	1
amp-genetics	1
pairing-genetics	1
hypoxanthines-metabolism	1
kinetics	1
thiogalactoside-chemistry-metabolism	1
origin	1
thorax-embryology	1
mapping-methods	1
phosphoproteins-metabolism-physiology	1
glandular	1
mycoplasma-enzymology	1
proteins-antagonists	1
cystine-chemistry	1
acids-metabolism	1
bamhi-chemistry-metabolism	1
complexes-chemistry-genetics-metabolism	1
estrogen-metabolism	1
protein-metabolism	1
body	1
flanking	1
region	1
inhibitors-genetics-metabolism	1
program	1
proteins-metabolism-physiology	1
ribonucleases	1
iron-sulfur	1
quality	1
breast	1
techniques	1
bacterial-chemistry-genetics	1
a-chemistry-metabolism	1
computing	1
trypsin-metabolism	1
proteins-chemistry-genetics-metabolism-physiology	1
bacterial-physiology	1
tata-box	1
bacterial-chemistry-genetics-metabolism	1
tertiary-genetics	1
nitrogen-chemistry	1
ii-metabolism	1
zippers-physiology	1
synaptotagmins	1
membrane	1
mutational	1
directed	1
multienzyme	1
elements-genetics	1
effects	1
multigene	1
probability	1
enzyme	1
animal	1
methionine-biosynthesis	1
carbon-chemistry	1
entropy	1
melanogaster-genetics-physiology	1
k12-genetics-growth	1
stereoisomerism	1
multiple	1
enzymes-chemistry-genetics-isolation	1
soybeans-microbiology	1
nuclear-chemistry	1
cells	1
trans-activators	1
thymine	1
selection	1
splicing	1
azacitidine-pharmacology	1
control	1
wilms	1
factors-genetics-physiology	1
factors-classification-genetics	1
drug	1
tfiiia	1
t-phages-genetics	1
chemistry	1
genetically	1
carbohydrates-chemistry	1
heterozygosity	1
adhesion	1
insect	1
myogenic	1
glycoproteins-chemistry	1
fungal-metabolism	1
alternative	1
exons-physiology	1
retrieval	1
bacteriophage	1
pdb	1
diffraction-methods	1
hemoglobins	1
cysteine-chemistry	1
studies	1
embryo	1
factors-chemistry-classification-genetics	1
proteins-analysis-chemistry	1
tertiary-drug	1
international	1
methodologies	1
glucocorticoid-genetics-metabolism	1
endonucleases	1
family-genetics	1
helix-turn-helix	1
methods	1
nucleotides-chemistry-pharmacology	1
plasmids-metabolism	1
communication	1
coli-metabolism	1
kruppel-like	1
transgenes	1
situ	1
resistance	1
amp-genetics-metabolism	1
reverse	1
drosophila-genetics	1
footprint	1
conversion	1
transfer	1
non-phs	1
climate	1
case-control	1
viral-genetics	1
phosphorylation	1
catalytic	1
islands	1
primers-chemistry	1
environmental	1
methylation	1
oligonucleotides-chemistry-genetics-metabolism	1
physical	1
bamhi-chemistry	1
cloning	1
basic-leucine	1
oxidoreductases	1
banding	1
motion	1
coli-chemistry-genetics-metabolism	1
subunits	1
5	1
bacteria-chemistry-genetics-metabolism	1
suppressor-physiology	1
patterning-genetics	1
oligopeptides	1
zippers	1
modified	1
peptides	1
topoisomerases	1
engineering-methods	1
substitution	1
kinases-genetics-metabolism	1
micrornas-genetics	1
purines-chemistry	1
languages	1
lambda-genetics	1
melanogaster-embryology-genetics-metabolism	1
messenger-metabolism	1
cytoplasmic	1
endonucleases-genetics-metabolism	1
fingers-physiology	1
acyl	1
regression	1
water-pharmacology	1
adenine-chemistry	1
transcriptase	1
fusion	1
loss	1
neoplasms	1
arginine-metabolism	1
proteins-chemistry-classification-metabolism	1
epithelial-genetics	1
primers	1
polymerases-genetics	1
curve	1
ecori-chemistry	1
cpg	1
1-chemistry-metabolism	1
enhancer	1
multiprotein	1
management	1
pyrimidines-chemistry	1
diffusion	1
nonmammalian	1
casein	1
genotype	1
development	1
coenzyme	1
coli-genetics-metabolism-physiology	1
pair	1
drift	1
cooperation	1
neoplasm	1
linear	1
protein-chemistry-metabolism	1
automated	1
introns	1
uracil	1
typing	1
i-chemistry-genetics-metabolism	1
coli-chemistry-metabolism	1
replication	1
molecules-antagonists	1
population-methods-statistics	1
alignment-methods-statistics	1
hydrogen-chemistry	1
restriction	1
host	1
trans-activators-chemistry-genetics-metabolism	1
antennapedia	1
phospholipases-chemistry	1
pliability	1
environment	1

brunocontreras's library 122 articles Export

brunocontreras's tags