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	DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG. [My Copy] Mol Cell, Vol. 19, No. 5. (2 September 2005), pp. 667-678. by R. J. Klose, S. A. Sarraf, L. Schmiedeberg, S. M. McDermott, I. Stancheva, A. P. Bird posted to binding factor methylation motif site transcription by bryankr on 2008-09-17 11:01:06 as along with 2 people oelemento imouthesmp
	Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques [My Copy] Genome Research In Genome Research, Vol. 16, No. 12. (19 December 2006), pp. 1455-1464. by Laura Elnitski, Victor X. Jin, Peggy J. Farnham, Steven J. M. Jones posted to binding factor mammalian review site tfbs transcription by bryankr on 2008-09-02 12:24:02 as along with 12 people and 2 groups bsamal matted gdb wowalz Stew heliopais dquest giovanni lusk SeungjoonOh cabbagezs maximilianh Bioinformatics - CRUK GeschwindLab
	Practical Strategies for Discovering Regulatory DNA Sequence Motifs [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (28 April 2006), e36. by Kenzie D. MacIsaac, Ernest Fraenkel posted to binding dna factor motifs reulatory site tfbs transcription by bryankr on 2008-09-02 12:18:53 as along with 18 people and 2 groups bsamal Jporci leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin ana chad_davis balicea hggr GustavoLacerda svdate kristallreiner structural_bioinformatics Bioinformatics
	Limitations and potentials of current motif discovery algorithms [My Copy] Nucl. Acids Res., Vol. 33, No. 15. (2 September 2005), pp. 4899-4913. by Jianjun Hu, Bin Li, Daisuke Kihara posted to algortihms discovery motif tfbs by bryankr on 2008-09-02 12:11:40 as along with 6 people and 1 group Dulce farhat wowalz Stew gpalidwor dquest Bioinformatics - CRUK
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to analysis binding factor review site software tfbs transcription by bryankr on 2008-09-02 12:06:31 as along with 39 people and 6 groups frohike mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to binding chip-seq factor transcription by bryankr on 2008-08-27 11:41:38 as along with 21 people and 1 group torfinnnome bsamal jwfoley ewilban1 nklee bertelsen stajich smiddha clearbluespring WanderingAengus polivares ptrobajo mdperry idonaldson gdb megraw kengg alhufton guhjy kjglennie maximilianh Mycology
	Methyl-DNA immunoprecipitation (MeDIP): hunting down the DNA methylome. [My Copy] BioTechniques, Vol. 44, No. 1. (January 2008) by F. V. Jacinto, E. Ballestar, M. Esteller posted to immunoprecipitation methyl-dna by bryankr on 2008-08-27 09:42:07 as along with 2 people bryank guhjy
	Small-molecule antagonists of Myc/Max dimerization inhibit Myc-induced transformation of chicken embryo fibroblasts. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 6. (19 March 2002), pp. 3830-3835. by T. Berg, S. B. Cohen, J. Desharnais, et al.C. Sonderegger, D. J. Maslyar, J. Goldberg, D. L. Boger, P. K. Vogt posted to c-myc max myc transcription by bryankr on 2008-08-26 19:21:40 as along with 2 people Dualsystems higueruelo
	In vivo transcriptional regulation of N-Myc target genes is controlled by E-box methylation [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 34. (2005), pp. 12117-12122. by Giovanni Perini, Daniel Diolaiti, Antonio Porro, Giuliano Della Valle posted to e-box factor mycn nmyc transcription by bryankr on 2008-08-26 17:34:09 as
	ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 8. (2007) by Adam Margolin, Teresa Palomero, Adolfo Ferrando, Andrea Califano, Gustavo Stolovitzky posted to analysis chip-on-chip significance by bryankr on 2008-08-26 16:37:47 as
	Enriched Transcription Factor Binding Sites in Hypermethylated Gene Promoters in Drug Resistant Cancer Cells. [My Copy] Bioinformatics (Oxford, England) (6 June 2008) by Meng Li, Hyun-Il Henry I. Paik, Curt Balch, et al.Yoosung Kim, Lang Li, Tim H-M H. Huang, Kenneth P P. Nephew, Sun Kim posted to cancer factor hypermethylation transcription by bryankr on 2008-08-26 14:47:05 as along with 2 people wowalz bootsy
	Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. [My Copy] BMC genomics, Vol. 9 (17 May 2008), 226. by Nalini Polavarapu, Leonardo Mariño-Ramírez, David Landsman, John F. McDonald, I. King Jordan posted to binding dna factor repetitive transcription by bryankr on 2008-08-26 12:33:22 as along with 3 people and 2 groups daforerog cisevol pradiptaray BergmanLab cis-regulatory-evolution
	Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts [My Copy] BMC Bioinformatics, Vol. 8 (26 June 2007), 221. by Joern Toedling, Oleg Sklyar, Wolfgang Huber posted to analysis chip ringo by bryankr on 2008-08-26 12:10:10 as along with 8 people TheresaNiederberger rschulz guhjy jfr ghattem hpaces caseybrown inesdesantiago
	ArrayCGH-based classification of neuroblastoma into genomic subgroups [My Copy] Genes, Chromosomes and Cancer, Vol. 46, No. 12. (2007), pp. 1098-1108. by Evi Michels, Jo Vandesompele, Katleen De Preter, et al.Jasmien Hoebeeck, Joëlle Vermeulen, Alexander Schramm, Jan J. Molenaar, Björn Menten, Barbara Marques, Raymond L. Stallings, Valérie Combaret, Christine Devalck, Anne De Paepe, Rogier Versteeg, Angelika Eggert, Geneviève Laureys, Nadine Van Roy, Frank Speleman posted to arraycgh clustering neuroblastoma by bryankr on 2009-02-02 15:29:31 as
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to chip-chip motif tfbs by bryankr on 2009-01-16 12:28:07 as along with 25 people and 3 groups bsamal hzoltan fpattyn stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes [My Copy] Nucl. Acids Res., Vol. 33, No. 10. (2 June 2005), pp. 3154-3164. by Shannan J. Ho Sui, James R. Mortimer, David J. Arenillas, et al.Jochen Brumm, Christopher J. Walsh, Brian P. Kennedy, Wyeth W. Wasserman posted to motif opossum tfbs by bryankr on 2009-01-16 11:56:45 as along with 6 people and 1 group tonamswish avilella inesdesantiago heliopais tmmurali gpalidwor Ensembl Compara citations
	Deregulated expression of E2F-1 induces S-phase entry and leads to apoptosis. [My Copy] Molecular and cellular biology, Vol. 14, No. 12. (December 1994), pp. 8166-8173. by B. Shan, W. H. Lee posted to e2f-1 n n-myc rb by bryankr on 2009-01-14 15:55:08 as
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-chip chip-seq macs by bryankr on 2009-01-14 14:33:27 as along with 25 people and 2 groups torfinnnome hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	Amino-terminal domains of c-myc and N-myc proteins mediate binding to the retinoblastoma gene product [My Copy] Nature, Vol. 352, No. 6335. (1991), pp. 541-544. by Anil K. Rustgi, Nicholas Dyson, Rene Bernards posted to atf e2f n-myc rb by bryankr on 2009-01-14 14:10:47 as
	Stabilization of N-Myc is a critical function of Aurora A in human neuroblastoma. [My Copy] Cancer cell, Vol. 15, No. 1. (6 January 2009), pp. 67-78. by T. Otto, S. Horn, M. Brockmann, et al.U. Eilers, L. Schüttrumpf, N. Popov, A. M. Kenney, J. H. Schulte, R. Beijersbergen, H. Christiansen, B. Berwanger, M. Eilers posted to aurora mycn n-myc by bryankr on 2009-01-09 12:08:06 as along with 1 person catcremona
	Genome-wide Analysis of Gene Expression Associated with MYCN in Human Neuroblastoma [My Copy] Cancer Res, Vol. 63, No. 15. (1 August 2003), pp. 4538-4546. by Miguel Alaminos, Jaume Mora, Nai-Kong V. Cheung, et al.Alex Smith, Jing Qin, Lishi Chen, William L. Gerald posted to e-box expression gene mycn neuroblastoma by bryankr on 2008-10-31 15:58:54 as
	Id family of helix-loop-helix proteins in cancer [My Copy] Nature Reviews Cancer, Vol. 5, No. 8. (01 August 2005), pp. 603-614. by Jonathan Perk, Antonio Iavarone, Robert Benezra posted to bhlh binding dna e-box helix-loop-helix proteins review by bryankr on 2008-10-31 09:37:55 as
	A ubiquitous and conserved signal for RNA localization in chordates. [My Copy] Current biology : CB, Vol. 12, No. 20. (15 October 2002), pp. 1756-1761. by J. N. Betley, M. C. Frith, J. H. Graber, S. Choo, J. O. Deshler posted to cac localization mrna repeats by bryankr on 2008-10-28 18:15:02 as
	Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo. [My Copy] PLoS ONE, Vol. 3, No. 3. (2008) by J. Kim, J. H. Lee, V. R. Iyer posted to c-myc e-box by bryankr on 2008-10-28 13:30:06 as along with 2 people and 1 group oelemento fpattyn Neuroblastoma
	The E Box Motif CAGGTG Enhances Somatic Hypermutation without Enhancing Transcription [My Copy] Immunity, Vol. 19, No. 2. (August 2003), pp. 235-242. by N. Michael posted to e-box hypersomatic mutation by bryankr on 2008-10-23 17:36:41 as
	MAZ, a zinc finger protein, binds to c-MYC and C2 gene sequences regulating transcriptional initiation and termination. [My Copy] Proc Natl Acad Sci U S A, Vol. 89, No. 16. (15 August 1992), pp. 7452-7456. by S. A. Bossone, C. Asselin, A. J. Patel, K. B. Marcu posted to maz myc by bryankr on 2008-10-23 15:46:45 as along with 1 person bpagano
	Neuroblastoma. [My Copy] Lancet, Vol. 369, No. 9579. (23 June 2007), pp. 2106-2120. by J. M. Maris, M. D. Hogarty, R. Bagatell, S. L. Cohn posted to neuroblastoma review by bryankr on 2008-10-23 15:43:44 as along with 1 person Amazoness
	Oncogenic mutations of ALK kinase in neuroblastoma [My Copy] Nature, Vol. 455, No. 7215., pp. 971-974. by Yuyan Chen, Junko Takita, Young L. Choi, et al.Motohiro Kato, Miki Ohira, Masashi Sanada, Lili Wang, Manabu Soda, Akira Kikuchi, Takashi Igarashi, Akira Nakagawara, Yasuhide Hayashi, Hiroyuki Mano, Seishi Ogawa posted to alk cancer neuroblastoma by bryankr on 2008-10-21 21:31:18 as
	Transcription factor MEF2C influences neural stem/progenitor cell differentiation and maturation in vivo [My Copy] Procedings of the National Academy of Sciences, Vol. 105, No. 41. (October 2008) by Hao, Jonathan, Michael, et al. Katherine, Scott, Jeffrey, Walid, Zhiguo, Yeon-Joo, 10, 11, 12, 13, 14 posted to binding mefc2 mycn by bryankr on 2008-10-21 11:52:47 as
	Distinct transcriptional MYCN/c-MYC activities are associated with spontaneous regression or malignant progression in neuroblastomas [My Copy] Genome Biology, Vol. 9 (13 October 2008), R150. by Frank Westermann, Daniel Muth, Axel Benner, et al.Tobias Bauer, Kai-Oliver Henrich, Andre Oberthur, Benedikt Brors, Tim Beissbarth, Jo Vandesompele, Filip Pattyn, Barbara Hero, Rainer Konig, Matthias Fischer, Manfred Schwab posted to c-myc mycn transcription by bryankr on 2008-10-20 10:02:09 as
	Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition. [My Copy] The EMBO journal, Vol. 16, No. 15. (1 August 1997), pp. 4689-4697. by T. Shimizu, A. Toumoto, K. Ihara, et al.M. Shimizu, Y. Kyogoku, N. Ogawa, Y. Oshima, T. Hakoshima posted to e-box helix-loop-helix by bryankr on 2008-10-07 13:27:30 as
	Global Regulation of Nucleotide Biosynthetic Genes by c-Myc [My Copy] PLoS ONE, Vol. 3, No. 7. (16 July 2008), e2722. by Yen-Chun Liu, Feng Li, Jesse Handler, et al.Cheng R. Huang, Yan Xiang, Nicola Neretti, John M. Sedivy, Karen I. Zeller, Chi V. Dang posted to c-myc chip-seq e-box immunoprecipitation by bryankr on 2008-10-07 13:05:00 as
	Integrating quantitative information from ChIP-chip experiments into motif finding. [My Copy] Biostatistics (28 May 2007) by Heejung Shim, Sündüz Keles posted to chip motif by bryankr on 2008-09-29 13:22:03 as along with 5 people and 1 group sebastien_vigneau kt kengg nklee maximilianh Plantandetc
	Binding of myc proteins to canonical and noncanonical DNA sequences. [My Copy] Molecular and cellular biology, Vol. 13, No. 9. (September 1993), pp. 5216-5224. by T. K. Blackwell, J. Huang, A. Ma, et al.L. Kretzner, F. W. Alt, R. N. Eisenman, H. Weintraub posted to binding comsensus motif myc by bryankr on 2008-09-24 16:52:56 as
	Myc goes global: new tricks for an old oncogene. [My Copy] Cancer Res, Vol. 67, No. 11. (1 June 2007), pp. 5061-5063. by P. S. Knoepfler posted to global myc oncogene regulation by bryankr on 2008-09-22 16:56:12 as along with 1 person guhjy
	Myc influences global chromatin structure [My Copy] The EMBO Journal, Vol. aop, No. current. (15 June 2006) by Paul S. Knoepfler, Xiao-Yong Zhang, Pei F. Cheng, Philip R. Gafken, Steven B. Mcmahon, Robert N. Eisenman posted to factor myc mycn regulation transcription by bryankr on 2008-09-22 16:52:44 as
	Hypomethylation of CpG Sites and <i>c-myc</i> Gene Overexpression in Hepatocellular Carcinomas, but Not Hyperplastic Nodules, Induced by a Choline-deficient L-Amino Acid-defined Diet in Rats [My Copy] Cancer Science, Vol. 90, No. 9. (1999), pp. 909-913. by Toshifumi Tsujiuchi, Masahiro Tsutsumi, Yasutaka Sasaki, Makoto Takahama, Yoichi Konishi posted to c-myc methylation by bryankr on 2008-09-22 10:47:46 as
	Determination of the DNA sequence recognized by the bHLH-zip domain of the N-Myc protein. [My Copy] Nucleic acids research, Vol. 20, No. 9. (11 May 1992), pp. 2257-2263. by R. Alex, O. Sözeri, S. Meyer, R. Dildrop posted to binding mycn n-myc sites tfbs by bryankr on 2008-09-20 16:40:56 as
	Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11484-11489. by W. James Kent, Robert Baertsch, Angie Hinrichs, Webb Miller, David Haussler posted to alignment browser chained genome net by bryankr on 2008-09-02 18:32:26 as along with 11 people and 2 groups gdb daveGerrard ilyashl hrogers semrich polivares pcahan1 djkt gjuggler nuin Auger BergmanLab Dead 60's
	Highly conserved non-coding sequences are associated with vertebrate development. [My Copy] PLoS Biol, Vol. 3, No. 1. (January 2005) by A. Woolfe, M. Goodson, D. K. Goode, et al.P. Snell, G. K. McEwen, T. Vavouri, S. F. Smith, P. North, H. Callaway, K. Kelly, K. Walter, I. Abnizova, W. Gilks, Y. J. Edwards, J. E. Cooke, G. Elgar posted to conserved dna non-coding regulatory sequences by bryankr on 2008-09-02 15:18:23 as along with 12 people and 3 groups daveGerrard aprasad diamantis nklee awoolfe djkt sujaikumar Stew maximilianh cisevol rrhudson gelgar BergmanLab EisenLab cis-regulatory-evolution
	What are DNA sequence motifs? [My Copy] Nature Biotechnology, Vol. 24, No. 4., pp. 423-425. by Patrik D'Haeseleer posted to dna motifs sequence by bryankr on 2008-09-02 14:56:03 as along with 4 people and 1 group okarsligil rlhsiao ekoenig isimpson Bioinformatics
	RgS-Miner: A Biological Data Warehousing, Analyzing and Mining System for Identifying Transcriptional Regulatory Sites in Human Genome [My Copy] Database and Expert Systems Applications (2004), pp. 751-760. by Yi-Ming Sun, Hsien-Da Huang, Jorng-Tzong Horng, Shir-Ly Huang, Ann-Ping Tsou posted to discovery motif by bryankr on 2008-09-02 13:16:21 as
	How does DNA sequence motif discovery work? [My Copy] Nature Biotechnology, Vol. 24, No. 8., pp. 959-961. by Patrik D'Haeseleer posted to no-tag by bryankr on 2008-09-02 13:00:43 as along with 9 people and 1 group Dulce wowalz cambray okarsligil Evangelia antonkratz xi03 idonaldson isimpson Bioinformatics
	Regulatory Circuit of Human MicroRNA Biogenesis [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e67. by Ji Lee, Zhihua Li, Rachel Brower-Sinning, Bino John posted to biogenesis microrna regulation by bryankr on 2008-09-02 12:57:38 as along with 2 people and 2 groups heliopais jianrong microRNA Bioinformatics
	Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (2006) by Bertrand R. Huber, Martha L. Bulyk posted to binding factor motifs multifinder specific tfbs tissue transcription by bryankr on 2008-09-02 12:50:24 as along with 4 people and 2 groups Stew indigoviolet gpalidwor nklee Bioinformatics - CRUK EisenLab
	FOOTER: a web tool for finding mammalian DNA regulatory regions using phylogenetic footprinting. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by D. L. Corcoran, E. Feingold, P. V. Benos posted to dna footprinting phylogenetic regions regulatory by bryankr on 2008-09-02 12:46:41 as along with 1 person wowalz
	A generic motif discovery algorithm for sequential data [My Copy] Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 21-28. by Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, Gregory N. Stephanopoulos posted to discovery factor motif tfbs transcription by bryankr on 2008-09-02 12:35:24 as along with 3 people wowalz windman83 thaliana
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to divergence factor species tfbs transcription yeast by bryankr on 2008-09-02 12:27:42 as along with 23 people and 2 groups provero pradiptaray gdb fenghezi dbensasson caseybrown aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	MEME: discovering and analyzing DNA and protein sequence motifs. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006), pp. W369-373. by Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li posted to binding dna factor meme motifs protein sequence site tfbs transcription by bryankr on 2008-09-02 12:16:17 as along with 8 people stharward wowalz coldmeadow yevishere pansapiens nklee dquest isimpson
	Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W199-203. by Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole posted to binding discovery factor motif transcription by bryankr on 2008-08-26 19:13:14 as along with 8 people farhat Dulce wowalz coldmeadow djkt dquest xiaobeizhao dandaman

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