bryankr's tfbs [11 articles] Export

Recent papers added to bryankr's library classified by the tag tfbs. You can also see everyone's tfbs.

	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to chip-chip motif tfbs by bryankr on 2009-01-16 12:28:07 as along with 25 people and 3 groups bsamal hzoltan fpattyn stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes [My Copy] Nucl. Acids Res., Vol. 33, No. 10. (2 June 2005), pp. 3154-3164. by Shannan J. Ho Sui, James R. Mortimer, David J. Arenillas, et al.Jochen Brumm, Christopher J. Walsh, Brian P. Kennedy, Wyeth W. Wasserman posted to motif opossum tfbs by bryankr on 2009-01-16 11:56:45 as along with 6 people and 1 group tonamswish avilella inesdesantiago heliopais tmmurali gpalidwor Ensembl Compara citations
	Determination of the DNA sequence recognized by the bHLH-zip domain of the N-Myc protein. [My Copy] Nucleic acids research, Vol. 20, No. 9. (11 May 1992), pp. 2257-2263. by R. Alex, O. Sözeri, S. Meyer, R. Dildrop posted to binding mycn n-myc sites tfbs by bryankr on 2008-09-20 16:40:56 as
	Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (2006) by Bertrand R. Huber, Martha L. Bulyk posted to binding factor motifs multifinder specific tfbs tissue transcription by bryankr on 2008-09-02 12:50:24 as along with 4 people and 2 groups Stew indigoviolet gpalidwor nklee Bioinformatics - CRUK EisenLab
	A generic motif discovery algorithm for sequential data [My Copy] Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 21-28. by Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, Gregory N. Stephanopoulos posted to discovery factor motif tfbs transcription by bryankr on 2008-09-02 12:35:24 as along with 3 people wowalz windman83 thaliana
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to divergence factor species tfbs transcription yeast by bryankr on 2008-09-02 12:27:42 as along with 23 people and 2 groups provero pradiptaray gdb fenghezi dbensasson caseybrown aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques [My Copy] Genome Research In Genome Research, Vol. 16, No. 12. (19 December 2006), pp. 1455-1464. by Laura Elnitski, Victor X. Jin, Peggy J. Farnham, Steven J. M. Jones posted to binding factor mammalian review site tfbs transcription by bryankr on 2008-09-02 12:24:02 as along with 12 people and 2 groups bsamal matted gdb wowalz Stew heliopais dquest giovanni lusk SeungjoonOh cabbagezs maximilianh Bioinformatics - CRUK GeschwindLab
	Practical Strategies for Discovering Regulatory DNA Sequence Motifs [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (28 April 2006), e36. by Kenzie D. MacIsaac, Ernest Fraenkel posted to binding dna factor motifs reulatory site tfbs transcription by bryankr on 2008-09-02 12:18:53 as along with 18 people and 2 groups bsamal Jporci leemond31 Dulce maximilianh heliopais daforerog natstreet druvus giovenko nuin ana chad_davis balicea hggr GustavoLacerda svdate kristallreiner structural_bioinformatics Bioinformatics
	MEME: discovering and analyzing DNA and protein sequence motifs. [My Copy] Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006), pp. W369-373. by Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li posted to binding dna factor meme motifs protein sequence site tfbs transcription by bryankr on 2008-09-02 12:16:17 as along with 8 people stharward wowalz coldmeadow yevishere pansapiens nklee dquest isimpson
	Limitations and potentials of current motif discovery algorithms [My Copy] Nucl. Acids Res., Vol. 33, No. 15. (2 September 2005), pp. 4899-4913. by Jianjun Hu, Bin Li, Daisuke Kihara posted to algortihms discovery motif tfbs by bryankr on 2008-09-02 12:11:40 as along with 6 people and 1 group Dulce farhat wowalz Stew gpalidwor dquest Bioinformatics - CRUK
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to analysis binding factor review site software tfbs transcription by bryankr on 2008-09-02 12:06:31 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT

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transcription	16
binding	14
factor	14
tfbs	11
motif	9
e-box	7
mycn	7
dna	7
c-myc	6
myc	5
site	5
motifs	4
review	4
n-myc	4
discovery	4
neuroblastoma	4
analysis	3
regulation	3
chip-seq	3
chip	2
cancer	2
helix-loop-helix	2
chip-chip	2
immunoprecipitation	2
sequence	2
regulatory	2
methylation	2
global	2
rb	2
localization	1
arraycgh	1
mutation	1
expression	1
sites	1
max	1
n	1
sequences	1
alignment	1
maz	1
cac	1
tissue	1
proteins	1
mammalian	1
chained	1
phylogenetic	1
footprinting	1
biogenesis	1
reulatory	1
regions	1
atf	1
microrna	1
macs	1
mrna	1
oncogene	1
nmyc	1
comsensus	1
repetitive	1
alk	1
net	1
significance	1
browser	1
chip-on-chip	1
e2f	1
repeats	1
multifinder	1
non-coding	1
clustering	1
software	1
hypermethylation	1
mefc2	1
meme	1
mapping	1
ringo	1
species	1
algortihms	1
protein	1
yeast	1
e2f-1	1
opossum	1
bhlh	1
divergence	1
aurora	1
gene	1
conserved	1
genome	1
specific	1
methyl-dna	1
hypersomatic	1

bryankr's tfbs [11 articles] Export

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