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	Genome-Wide Survey for Biologically Functional Pseudogenes [My Copy] PLoS Comput Biol, Vol. 2, No. 5. (5 May 2006), e46. by Örjan Svensson, Lars Arvestad, Jens Lagergren posted to function genomics pseudogene survey by bsmagic on 2006-07-20 13:44:57 as along with 3 people and 2 groups cjeans renatomilani smbe2008 Bioinformatics bioinplant
	A genome-wide survey of R gene polymorphisms in Arabidopsis. [My Copy] Plant Cell, Vol. 18, No. 8. (August 2006), pp. 1803-1818. by E. G. Bakker, C. Toomajian, M. Kreitman, J. Bergelson posted to arabidopsis gene plant polymorphisms r_gene resistance rga by bsmagic on 2006-11-27 14:15:13 as along with 2 people and 2 groups maren saru Bioinformatics bioinplant
	A New Twist on Transposons: The Maize Genome Harbors Helitron Insertion [My Copy] Plant Cell, Vol. 15, No. 2. (1 February 2003), pp. 293-295. by Nancy A. Eckardt posted to evolution genomics helitron plant transposon by bsmagic on 2006-07-28 04:55:34 as along with 2 groups Bioinformatics bioinplant
	Statistical signals in bioinformatics. [My Copy] Proc Natl Acad Sci U S A (12 September 2005) by Samuel Karlin posted to algorithm analysis bioinformatics review sequence statistics by bsmagic on 2006-07-21 08:04:09 as along with 5 people and 2 groups aalibes Ayest aaronsmith quianominorleo ardalby Bioinformatics bioinplant
	In silico selection of active siRNA. [My Copy] Drug Discov Today, Vol. 12, No. 3-4. (February 2007), pp. 139-148. by V. Patzel posted to sirna by bsmagic on 2007-11-24 07:19:13 as along with 4 people puranjoy_b guhjy tardigrade mtagaya
	Construction of a YAC library from barley cultivar Franka and identification of YAC-derived markers linked to the Rh2 gene conferring resistance to scald (Rhynchosporium secalis) [My Copy] pp. 1031-1040. by D. Schmidt posted to item rga by bsmagic on 2007-05-25 02:28:24 as along with 2 groups Bioinformatics bioinplant
	Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis. [My Copy] Plant J, Vol. 38, No. 6. (June 2004), pp. 898-909. by E. Sinapidou, K. Williams, L. Nott, et al.S. Bahkt, M. Tör, I. Crute, P. Bittner-Eddy, J. Beynon posted to arabidopsis gene plant r_gene resistance rga by bsmagic on 2006-11-27 14:23:42 as along with 1 person and 2 groups saru Bioinformatics bioinplant
	Genome-Wide Analysis of NBS-LRR-Encoding Genes in Arabidopsis [My Copy] Plant Cell, Vol. 15, No. 4. (1 April 2003), pp. 809-834. by Blake C. Meyers, Alexander Kozik, Alyssa Griego, Hanhui Kuang, Richard W. Michelmore posted to arabidopsis gene plant r_gene resistance rga by bsmagic on 2006-11-27 14:23:26 as along with 2 people and 2 groups saru talponer Bioinformatics bioinplant
	The Arabidopsis thaliana TIR-NB-LRR R-protein, RPP1A; protein localization and constitutive activation of defence by truncated alleles in tobacco and Arabidopsis [My Copy] The Plant Journal, Vol. 47, No. 6. (September 2006), pp. 829-840. by Michael Weaver, L., Swiderski, et al.R. Michal, Li, Yan, Jones, D. G. Jonathan posted to arabidopsis gene plant r_gene resistance rga by bsmagic on 2006-11-27 14:23:00 as along with 1 person and 2 groups saru Bioinformatics bioinplant
	An ICE pattern crystallizes [My Copy] Nat Genet, Vol. 35, No. 1. (2003), pp. 11-12. by Laura Spahn, Denise P. Barlow posted to ncrna promoter by bsmagic on 2006-11-16 13:32:50 as along with 2 groups Bioinformatics bioinplant
	Molecular evolution of a microRNA cluster in the PWS/AS region among mammals. [My Copy] Gene (1 March 2005) by Keisuke Onishi, Shintaroh Ueda posted to microrna ncrna evolution by bsmagic on 2006-11-16 13:31:06 as along with 1 person and 2 groups mtagaya Bioinformatics bioinplant
	Experimental approaches to identify non-coding RNAs. [My Copy] Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 635-646. by A. Hüttenhofer, J. Vogel posted to ncrna prediction experimental by bsmagic on 2006-11-16 13:30:56 as along with 9 people and 7 groups dayjm myrtilus marcius eweaver perrywoo dchughes tabu mtagaya cdawson Bioinformatics G4ID BioinfoCIPF bioinplant SGU-CIPF GIG Genetics-of-Gambling
	ddbRNA: detection of conserved secondary structures in multiple alignments. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 13. (1 September 2003), pp. 1606-1611. by D. di Bernardo, T. Down, T. Hubbard posted to algorithm structure alignment secondary by bsmagic on 2006-11-16 13:30:41 as along with 3 people and 2 groups timhubbard eckart_bindewald arcticrasta Bioinformatics bioinplant
	Mass spectrometry of RNA: linking the genome to the proteome. [My Copy] Brief Funct Genomic Proteomic, Vol. 5, No. 1. (March 2006), pp. 87-95. by Z. Meng, P. A. Limbach posted to genomics protemics ncrna spectrometry transcriptomics by bsmagic on 2006-11-16 13:30:00 as along with 1 person and 2 groups jayster4 Bioinformatics bioinplant
	A comparison of RNA folding measures [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (3 October 2005), 241. by Eva Freyhult, Paul Gardner, Vincent Moulton posted to ncrna review folding by bsmagic on 2006-11-16 13:28:17 as along with 7 people and 4 groups homonecloco druvus imouthesmp marcius eckart_bindewald mtagaya Kiarostami Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Non-coding RNA [My Copy] Hum. Mol. Genet., Vol. 15 Spec No 1, No. suppl_1. (15 April 2006), pp. R17-29. by John S. Mattick, Igor V. Makunin posted to ncrna review by bsmagic on 2006-11-16 13:28:00 as along with 16 people and 7 groups GeeSharpMinor danaiancu rb_india zanexu myrtilus tuck marcius eckart_bindewald tardigrade andersbj dchughes mtagaya scroft cabbagezs bertelsen robertkofler Bioinformatics microRNA G4ID BioinfoCIPF bioinplant SGU-CIPF Genetics-of-Gambling
	Evolution of small nucleolar RNAs in nematodes. [My Copy] Nucleic Acids Res, Vol. 34, No. 9. (2006), pp. 2676-2685. by A. Zemann, A. op de Bekke, M. Kiefmann, J. Brosius, J. Schmitz posted to evolution ncrna by bsmagic on 2006-11-16 13:27:50 as along with 3 people and 3 groups thegoose2 tharris mtagaya C. elegans / WormBase Bioinformatics bioinplant
	Evolutionary patterns of non-coding RNAs [My Copy] Theory in Biosciences, Vol. 123, No. 4. (15 April 2005), pp. 301-369. by Athanasius F. Bompfunewerer, Christoph Flamm, Claudia Fried, et al.Guido Fritzsch, Ivo L. Hofacker, Jorg Lehmann, Kristin Missal, Axel Mosig, Bettina Muller, Sonja J. Prohaska posted to evolution ncrna by bsmagic on 2006-11-16 13:27:43 as along with 3 people and 2 groups evaf Eonwe ilh Bioinformatics bioinplant
	Clusters of internally primed transcripts reveal novel long noncoding RNAs. [My Copy] PLoS Genet, Vol. 2, No. 4. (April 2006) by M. Furuno, K. C. Pang, N. Ninomiya, et al.S. Fukuda, M. C. Frith, C. Bult, C. Kai, J. Kawai, P. Carninci, Y. Hayashizaki, J. S. Mattick, H. Suzuki posted to ncrna promoter prediction by bsmagic on 2006-11-16 13:27:33 as along with 3 people and 4 groups dchughes mtagaya jayster4 Bioinformatics G4ID bioinplant Genetics-of-Gambling
	StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time [My Copy] Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1593-1599. by Dalli, Deniz, Wilm, et al. Andreas, Mainz, Indra, Steger, Gerhard posted to algorithm motif ncrna alignment by bsmagic on 2006-11-16 13:27:19 as along with 4 people and 4 groups marcius eckart_bindewald ilh papamicd Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	The regulatory architecture of the human genome. [My Copy] Asia Pac J Clin Nutr, Vol. 13, No. Suppl. (2004) by J. S. Mattick posted to genomics network regulation by bsmagic on 2006-11-16 13:26:01 as along with 1 person and 2 groups snuppepuppan Bioinformatics bioinplant
	CMfinder--a covariance model based RNA motif finding algorithm. [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 445-452. by Z. Yao, Z. Weinberg, W. L. Ruzzo posted to algorithm motif ncrna by bsmagic on 2006-11-16 13:25:30 as along with 1 person and 2 groups arcticrasta Bioinformatics bioinplant
	Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae. [My Copy] J Exp Zoolog B Mol Dev Evol, Vol. 306, No. 4. (15 July 2006), pp. 379-392. by K. Missal, X. Zhu, D. Rose, et al.W. Deng, G. Skogerbø, R. Chen, P. F. Stadler posted to ncrna prediction by bsmagic on 2006-11-16 13:22:59 as along with 3 people and 3 groups NicholasErho thegoose2 tharris C. elegans / WormBase Bioinformatics bioinplant
	Distinguishing protein-coding from non-coding RNAs through support vector machines. [My Copy] PLoS Genet, Vol. 2, No. 4. (April 2006) by J. Liu, J. Gough, B. Rost posted to algorithm ncrna prediction svm by bsmagic on 2006-11-16 13:22:51 as along with 1 person and 2 groups ilh Bioinformatics bioinplant
	The functional genomics of noncoding RNA. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1527-1528. by John S. Mattick posted to functional genomics ncrna by bsmagic on 2006-11-16 13:22:23 as along with 12 people and 8 groups GeeSharpMinor coela biozhang2001 lyongu marcius alexg eckart_bindewald dchughes mtagaya cmm neveaire jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant SGU-CIPF
	Noncoding regulatory RNAs database [My Copy] Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 429-431. by Maciej Szymanski, Volker A. Erdmann, Jan Barciszewski posted to database ncrna regulatory by bsmagic on 2006-11-16 13:22:11 as along with 2 people and 2 groups arcticrasta mtagaya Bioinformatics bioinplant
	Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model. [My Copy] Gene, Vol. 372 (10 May 2006), pp. 171-181. by N. Yachie, K. Numata, R. Saito, A. Kanai, M. Tomita posted to algorithm ncrna prediction by bsmagic on 2006-11-16 13:21:14 as along with 1 person and 2 groups nzm Bioinformatics bioinplant
	NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by T. Wu, J. Wang, C. Liu, et al.Y. Zhang, B. Shi, X. Zhu, Z. Zhang, G. Skogerbø, L. Chen, H. Lu, Y. Zhao, R. Chen posted to database interaction ncrna protein by bsmagic on 2006-11-16 13:20:29 as along with 1 person and 2 groups mtagaya Bioinformatics bioinplant
	Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray [My Copy] Nucl. Acids Res., Vol. 34, No. 10. (31 May 2006), pp. 2976-2983. by Housheng He, Lun Cai, Geir Skogerbo, et al.Wei Deng, Tao Liu, Xiaopeng Zhu, Yudong Wang, Dong Jia, Zhihua Zhang, Yong Tao, Haipan Zeng, Muhammad N. Aftab, Yan Cui, Guozhen Liu, Runsheng Chen posted to expression transcriptome ncrna microarray profiling by bsmagic on 2006-11-16 13:19:45 as along with 5 people and 4 groups thegoose2 tharris tardigrade mtagaya cdawson C. elegans / WormBase Bioinformatics bioinplant GIG
	Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression. [My Copy] Genome Res, Vol. 16, No. 1. (January 2006), pp. 20-29. by W. Deng, X. Zhu, G. Skogerbø, et al.Y. Zhao, Z. Fu, Y. Wang, H. He, L. Cai, H. Sun, C. Liu, B. Li, B. Bai, J. Wang, D. Jia, S. Sun, H. He, Y. Cui, Y. Wang, D. Bu, R. Chen posted to function ncrna transcriptome by bsmagic on 2006-11-16 13:18:54 as along with 4 people and 5 groups thegoose2 tharris imouthesmp marcius C. elegans / WormBase Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	PSoL: a positive sample only learning algorithm for finding non-coding RNA genes. [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2590-2596. by C. Wang, C. Ding, R. F. Meraz, S. R. Holbrook posted to algorithm ncrna prediction by bsmagic on 2006-11-16 13:16:54 as along with 2 people and 2 groups NicholasErho plofje Bioinformatics bioinplant
	Computational identification of noncoding RNAs in E. coli by comparative genomics. [My Copy] Curr Biol, Vol. 11, No. 17. (4 September 2001), pp. 1369-1373. by E. Rivas, R. J. Klein, T. A. Jones, S. R. Eddy posted to comparative genomics ncrna prediction by bsmagic on 2006-11-16 13:12:45 as along with 7 people and 4 groups NicholasErho myrtilus evaf marcius eckart_bindewald arcticrasta dquest Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Non\|[ndash]\|coding RNA genes and the modern RNA world [My Copy] Nature Reviews Genetics, Vol. 2, No. 12. (01 December 2001), pp. 919-929. by Sean R. Eddy posted to ncrna review by bsmagic on 2006-11-16 13:11:54 as along with 6 people and 2 groups GeeSharpMinor heliopais reyez evaf eckart_bindewald arcticrasta Bioinformatics bioinplant
	Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming. [My Copy] Nucleic Acids Res, Vol. 33, No. 10. (2005), pp. 3263-3270. by P. Saetrom, R. Sneve, K. I. Kristiansen, et al.O. Snøve, T. Grünfeld, T. Rognes, E. Seeberg posted to algorithm genetic_programming ncrna prediction by bsmagic on 2006-11-16 13:10:07 as along with 2 people and 2 groups ujh numata Bioinformatics bioinplant
	A split promoter for a eucaryotic tRNA gene. [My Copy] Cell, Vol. 24, No. 2. (May 1981), pp. 573-585. by H. Hofstetter, A. Kressman, M. L. Birnstiel posted to ncrna promoter special by bsmagic on 2006-11-16 13:03:27 as along with 1 person and 2 groups mtagaya Bioinformatics bioinplant
	A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin Signaling [My Copy] Science, Vol. 312, No. 5772. (21 April 2006), pp. 436-439. by Lionel Navarro, Patrice Dunoyer, Florence Jay, et al.Benedict Arnold, Nihal Dharmasiri, Mark Estelle, Olivier Voinnet, Jonathan D. G. Jones posted to microrna mirna ncrna plant resistance by bsmagic on 2006-11-16 12:53:43 as along with 3 people and 2 groups vprieto rjlawren tardigrade Bioinformatics bioinplant
	Functional annotation and network reconstruction through cross-platform integration of microarray data [My Copy] Nat Biotech, Vol. 23, No. 2. (16 February 2005), pp. 238-243. by Xianghong J. Zhou, Ming-Chih J. Kao, Haiyan Huang, et al.Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M. Aparicio, Caleb E. Finch, Todd E. Morgan, Wing H. Wong posted to algorithm expression microarray modeling network networks omics reconstruction regulatory by bsmagic on 2006-08-11 03:26:26 as along with 8 people and 2 groups Borelli cswinburne setar andytseng imouthesmp lyongu wnpx rdiaz Bioinformatics bioinplant
	A gene fusion network in human neoplasia [My Copy] Oncogene, Vol. aop, No. current. by M. Höglund, A. Frigyesi, F. Mitelman posted to cancer fusion gene hubs human network by bsmagic on 2006-08-11 03:03:15 as along with 2 people and 3 groups ealloza Garamonfok Bioinformatics BioinfoCIPF bioinplant
	Why do Hubs Tend to be Essential in Protein Networks? [My Copy] PLoS Genetics, Vol. preprint, No. 2006. (1 April 2006), e88.eor. by Xionglei He, Jianzhi Zhang posted to hubs networks protein systems by bsmagic on 2006-08-11 03:01:55 as along with 2 people and 2 groups dylanwalker annacarina07 Bioinformatics bioinplant
	Modeling Lactococcus lactis using a genome-scale flux model [My Copy] BMC Microbiology, Vol. 5, No. 1. (2005), 39. by Ana Oliveira, Jens Nielsen, Jochen Forster posted to flux metabolic microbe model network reconstruction by bsmagic on 2006-08-01 21:32:20 as along with 2 people and 3 groups schwartzjmc athleem Bioinformatics bioinplant JJJ
	Computational prediction of human metabolic pathways from the complete human genome. [My Copy] Genome Biol, Vol. 6, No. 1. (2005) by P. Romero, J. Wagg, M. L. Green, D. Kaiser, M. Krummenacker, P. D. Karp posted to bioinformatics computational genome human metabolic network pathways prediction reconstruction systems by bsmagic on 2006-08-01 21:29:58 as along with 5 people and 2 groups ilyashl andytseng tmmurali okarsligil eweaver Bioinformatics bioinplant
	Reconstructing the metabolic network of a bacterium from its genome. [My Copy] Trends in microbiology, Vol. 13, No. 11. (November 2005), pp. 550-558. by C. Francke, R. J. Siezen, B. Teusink posted to bacterium genome metabolic network reconstruction template by bsmagic on 2006-08-01 21:27:02 as along with 6 people and 2 groups neilswainston kuhn jmeppley JeremyZucker gurkanbebek shung Bioinformatics bioinplant
	metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella [My Copy] Nucleic Acids Research, Vol. 33, No. 4., pp. 1399-1409. by W. Pinney, W. Shirley, A. Mcconkey, R. Westhead posted to metabolic network prediction reconstruction sequence software systems by bsmagic on 2006-08-01 21:24:10 as along with 4 people and 2 groups jmeppley eweaver shung hryk Bioinformatics bioinplant
	Genome-Scale Reconstruction of the Saccharomyces cerevisiae Metabolic Network [My Copy] Genome Research In Genome Research, Vol. 13, No. 2. (1 February 2003), pp. 244-253. by Jochen FÃ¶rster, Iman Famili, Patrick Fu, Bernhard Palsson, Jens Nielsen posted to biology genome genome-scale metabolic model network organism reconstruction systems template yeast by bsmagic on 2006-08-01 21:13:46 as along with 12 people and 3 groups dadiamah sergiun schwartzjmc michaelbarton csanford opheliav wnpx nirfriedman JeremyZucker gcalda jpoyatos edwardmorrissey Bioinformatics bioinplant MetabolicModeling
	Advances in flux balance analysis. [My Copy] Curr Opin Biotechnol, Vol. 14, No. 5. (October 2003), pp. 491-496. by K. J. Kauffman, P. Prakash, J. S. Edwards posted to advance algorithm balance biochemical flux gene metabolic method network review by bsmagic on 2006-07-28 20:00:56 as along with 5 people and 5 groups winterstream beapen wnpx nirfriedman edwardmorrissey Bioinformatics Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics bioinplant
	Programming of reasoning and planning agents with FLUX [My Copy] (2002) by M. Thielscher posted to ai flux method programming by bsmagic on 2006-07-28 19:54:18 as along with 1 person and 2 groups stavros Bioinformatics bioinplant
	What makes species unique? The contribution of proteins with obscure features [My Copy] Genome Biology, Vol. 7 (19 July 2006), R57. by Martin Gollery, Jeff Harper, John Cushman, et al.Taliah Mittler, Thomas Girke, Jian-Kang Zhu, Julia Bailey-Serres, Ron Mittler posted to comparative evolution genomics unique by bsmagic on 2006-07-28 19:49:32 as along with 2 people and 2 groups tny jsnoddy Bioinformatics bioinplant
	Structured motifs search. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 8. (October 2005), pp. 1065-1082. by Michele Morgante, Alberto Policriti, Nicola Vitacolonna, Andrea Zuccolo posted to algorithm bioinformatics motif search sequence structure by bsmagic on 2006-07-28 06:15:19 as along with 2 people and 2 groups maximilianh yoanjacquemin Bioinformatics bioinplant
	Searching RNA motifs and their intermolecular contacts with constraint networks. [My Copy] Bioinformatics (4 July 2006) by P Thébault, S de Givry, T Schiex, C Gaspin posted to algorithm constraint intermolecular motif network rna search structure by bsmagic on 2006-07-28 06:12:09 as along with 3 people and 4 groups marcius tardigrade dquest Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
	Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 8. (15 April 2006), pp. 989-996. by H. Li, J. Li, L. Wong posted to algorithm bioinformatics interaction motif prediction proteome sequence site structure by bsmagic on 2006-07-28 06:12:01 as along with 1 person and 2 groups wowalz Bioinformatics bioinplant

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