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burkey's library [60 articles]

Recent papers added to burkey's library.
  • Caspase-6 is the direct activator of caspase-8 in the cytochrome c-induced apoptosis pathway: absolute requirement for removal of caspase-6 prodomain
    Cell Death and Differentiation, Vol. 9, No. 10. (2002), pp. 1046-1056.
    by V Cowling, J Downward
    posted to no-tag by burkey on 2008-07-29 21:04:03 as **
  • BCL-2, BCL-XL Sequester BH3 Domain-Only Molecules Preventing BAX- and BAK-Mediated Mitochondrial Apoptosis
    Molecular Cell, Vol. 8, No. 3. (September 2001), pp. 705-711.
    by Emily H Cheng, Michael C Wei, Solly Weiler, Richard A Flavell, Tak W Mak, Tullia Lindsten, Stanley J Korsmeyer
    posted to no-tag by burkey on 2008-07-29 20:43:25 as **
  • BAR: An apoptosis regulator at the intersection of caspases and Bcl-2 family proteins.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 6. (14 March 2000), pp. 2597-2602.
    by H Zhang, Q Xu, S Krajewski, M Krajewska, Z Xie, S Fuess, S Kitada, K Pawlowski, A Godzik, JC Reed
    posted to no-tag by burkey on 2008-07-29 20:38:19 as **
  • Cleavage of BID by Caspase 8 Mediates the Mitochondrial Damage in the Fas Pathway of Apoptosis
    Cell, Vol. 94, No. 4. (21 August 1998), pp. 491-501.
    by Honglin Li, Hong Zhu, Chi-Jie Xu, Junying Yuan
    posted to no-tag by burkey on 2008-07-29 20:33:30 as **
  • Bistability Analyses of a Caspase Activation Model for Receptor-induced Apoptosis
    J. Biol. Chem., Vol. 279, No. 35. (27 August 2004), pp. 36892-36897.
    by Thomas Eissing, Holger Conzelmann, Ernst D Gilles, Frank Allgower, Eric Bullinger, Peter Scheurich
    posted to no-tag by burkey on 2008-07-29 20:25:53 as **
  • Bid, a Bcl2 Interacting Protein, Mediates Cytochrome c Release from Mitochondria in Response to Activation of Cell Surface Death Receptors
    Cell, Vol. 94, No. 4. (21 August 1998), pp. 481-490.
    by Xu Luo, Imawati Budihardjo, Hua Zou, Clive Slaughter, Xiaodong Wang
    posted to no-tag by burkey on 2008-07-29 20:17:47 as **
  • X-linked IAP is a direct inhibitor of cell-death proteases
    Nature, Vol. 388, No. 6639. (17 July 1997), pp. 300-304.
    by Quinn L Deveraux, Ryosuke Takahashi, Guy S Salvesen, John C Reed
    posted to no-tag by burkey on 2008-07-29 19:58:41 as **
  • Cytochrome c and dATP-Dependent Formation of Apaf-1/Caspase-9 Complex Initiates an Apoptotic Protease Cascade
    Cell, Vol. 91, No. 4. (14 November 1997), pp. 479-489.
    by Peng Li, Deepak Nijhawan, Imawati Budihardjo, Srinivasa M Srinivasula, Manzoor Ahmad, Emad S Alnemri, Xiaodong Wang
    posted to no-tag by burkey on 2008-07-29 19:36:03 as **
  • Yama/CPP32[beta], a mammalian homolog of CED-3, is a CrmA-inhibitable protease that cleaves the death substrate poly(ADP-ribose) polymerase
    Cell, Vol. 81, No. 5. (2 June 1995), pp. 801-809.
    by Muneesh Tewari, Long T Quan, Karen O'Rourke, Serge Desnoyers, Zhi Zeng, David R Beidler, Guy G Poirier, Guy S Salvesen, Vishva M Dixit
    posted to no-tag by burkey on 2008-07-29 19:28:10 as **
  • Identification of DIABLO, a Mammalian Protein that Promotes Apoptosis by Binding to and Antagonizing IAP Proteins
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 43-53.
    by Anne M Verhagen, Paul G Ekert, Miha Pakusch, John Silke, Lisa M Connolly, Gavin E Reid, Robert L Moritz, Richard J Simpson, David L Vaux
    posted to no-tag by burkey on 2008-07-29 19:23:58 as **
  • Smac, a Mitochondrial Protein that Promotes Cytochrome c-Dependent Caspase Activation by Eliminating IAP Inhibition
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 33-42.
    by Chunying Du, Min Fang, Yucheng Li, Lily Li, Xiaodong Wang
    posted to no-tag by burkey on 2008-07-29 19:13:23 as **
  • TNF-alpha signals apoptosis through a bid-dependent conformational change in Bax that is inhibited by E1B 19K.
    Mol Cell, Vol. 6, No. 1. (July 2000), pp. 53-63.
    by D Perez, E White
    posted to no-tag by burkey on 2008-07-29 19:07:36 as **
  • Pro-apoptotic cascade activates BID, which oligomerizes BAK or BAX into pores that result in the release of cytochrome c
    Cell Death Differ, Vol. 7, No. 12. (December 2000), pp. 1166-1175.
    by SJ Korsmeyer, MC Wei, M Saito, S Weiler, KJ Oh, PH Schlesinger
    posted to no-tag by burkey on 2008-07-29 18:00:36 as **
  • Distinct BH3 domains either sensitize or activate mitochondrial apoptosis, serving as prototype cancer therapeutics
    Cancer Cell, Vol. 2, No. 3. (September 2002), pp. 183-192.
    by A Letai, MC Bassik, LD Walensky, MD Sorcinelli, S Weiler, SJ Korsmeyer
    posted to no-tag by burkey on 2008-07-29 16:36:35 as **
  • Crystal Structure of MC159 Reveals Molecular Mechanism of DISC Assembly and FLIP Inhibition
    Molecular Cell, Vol. 20, No. 6. (22 December 2005), pp. 939-949.
    by Jin K Yang, Liwei Wang, Lixin Zheng, Fengyi Wan, Misonara Ahmed, Michael J Lenardo, Hao Wu
    posted to no-tag by burkey on 2008-07-29 16:28:33 as **
  • Single-cell Fluorescence Resonance Energy Transfer Analysis Demonstrates That Caspase Activation during Apoptosis Is a Rapid Process. ROLE OF CASPASE-3
    J. Biol. Chem., Vol. 277, No. 27. (28 June 2002), pp. 24506-24514.
    by Markus Rehm, Heiko Dussmann, Reiner U Janicke, Jeremy M Tavare, Donat Kogel, Jochen H Prehn
    posted to no-tag by burkey on 2008-07-29 16:23:19 as **
  • Apoptotic Stimuli Initiate MLL-AF9 Translocations that Are Transcribed in Cells Capable of Division
    Cancer Res, Vol. 63, No. 6. (15 March 2003), pp. 1377-1381.
    by Christopher J Betti, Michael J Villalobos, Manuel O Diaz, Andrew T Vaughan
    posted to no-tag by burkey on 2008-07-29 16:15:48 as **
  • Real-time single cell analysis of Smac/DIABLO release during apoptosis
    J. Cell Biol., Vol. 162, No. 6. (15 September 2003), pp. 1031-1043.
    by Markus Rehm, Heiko Dussmann, Jochen H Prehn
    posted to no-tag by burkey on 2008-04-21 19:50:07 as **
  • Quantitative Analysis of Pathways Controlling Extrinsic Apoptosis in Single Cells
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 11-25.
    by John G Albeck, John M Burke, Bree B Aldridge, Mingsheng Zhang, Douglas A Lauffenburger, Peter K Sorger
    posted to no-tag by burkey on 2008-04-21 19:42:40 as ** along with 1 person brianb
  • TRAIL-induced apoptosis requires Bax-dependent mitochondrial release of Smac/DIABLO
    Genes Dev., Vol. 16, No. 1. (1 January 2002), pp. 33-45.
    by Yibin Deng, Yahong Lin, Xiangwei Wu
    posted to no-tag by burkey on 2008-04-21 19:36:39 as **
  • Cytotoxicity-dependent APO-1 (Fas/CD95)-associated proteins form a death-inducing signaling complex (DISC) with the receptor.
    The EMBO journal, Vol. 14, No. 22. (15 November 1995), pp. 5579-5588.
    by FC Kischkel, S Hellbardt, I Behrmann, M Germer, M Pawlita, PH Krammer, ME Peter
    posted to no-tag by burkey on 2008-04-21 19:32:57 as **
  • Modeling and Simulation in Medicine and the Life Sciences
    (2002)
    by FC Hoppensteadt, CS Peskin
    posted to no-tag by burkey on 2008-04-21 18:25:33 as **
  • Weakly Connected Neural Networks
    by FC Hoppensteadt, EM Izhikevich
    posted to no-tag by burkey on 2008-04-21 18:19:15 as **
  • Nonlinear oscillations, dynamical systems, and bifurcations of vector fields
    (1983)
    by J Guckenheimer, P Holmes
    posted to ms2007 by burkey on 2008-02-20 23:39:19 as **
  • Multiple cusp bifurcations.
    Neural Netw, Vol. 11, No. 3. (April 1998), pp. 495-508.
    by Eugene M Izhikevich
    posted to cdp grant by burkey on 2007-10-11 23:38:13 as **
  • An uncleavable procaspase-3 mutant has a lower catalytic efficiency but an active site similar to that of mature caspase-3.
    Biochemistry, Vol. 42, No. 42. (28 October 2003), pp. 12298-12310.
    by K Bose, C Pop, B Feeney, AC Clark
    posted to ms2007 by burkey on 2007-10-02 20:26:29 as **
  • Structural basis for the activation of human procaspase-7.
    Proc Natl Acad Sci U S A, Vol. 98, No. 26. (18 December 2001), pp. 14790-14795.
    by SJ Riedl, P Fuentes-Prior, M Renatus, N Kairies, S Krapp, R Huber, GS Salvesen, W Bode
    posted to ms2007 by burkey on 2007-10-02 19:56:45 as **
  • Requirement of both the second and third BIR domains for the relief of X-linked inhibitor of apoptosis protein (XIAP)-mediated caspase inhibition by Smac.
    J Biol Chem, Vol. 278, No. 49. (5 December 2003), pp. 49517-49522.
    by Y Huang, RL Rich, DG Myszka, H Wu
    posted to ms2007 by burkey on 2007-10-02 19:49:15 as **
  • Elimination of Mcl-1 is required for the initiation of apoptosis following ultraviolet irradiation.
    Genes Dev, Vol. 17, No. 12. (15 June 2003), pp. 1475-1486.
    by D Nijhawan, M Fang, E Traer, Q Zhong, W Gao, F Du, X Wang
    posted to ms2007 by burkey on 2007-10-02 19:14:00 as **
  • Lab Ref, Volume 1A Handbook of Recipes, Reagents, and Other Reference Tools for Use at the Bench
    (2002)
    by J Roskams, R Rodgers
    edited by J Roskams, R Rodgers
    posted to ms2007 by burkey on 2007-09-21 20:41:53 as **
  • Analysis and simulation of chaotic systems
    (2000)
    by FC Hoppensteadt
    posted to ms2007 by burkey on 2007-08-24 20:48:04 as **
  • Mitochondrial growth and division during the cell cycle in HeLa cells.
    J Cell Biol, Vol. 74, No. 2. (August 1977), pp. 468-491.
    by JW Posakony, JM England, G Attardi
    posted to ms2007 by burkey on 2007-08-22 23:03:56 as **
  • Modeling snap-action, variable-delay switch controlling extrinsic cell death
    PLoS Biology (in preperation)
    by JG Albeck, JM Burke, S Spencer, DA Lauffenburger, PK Sorger
    posted to ms2007 by burkey on 2007-08-22 21:40:04 as **
  • Physicochemical modelling of cell signalling pathways
    Nature Cell Biology, Vol. 8, No. 11., pp. 1195-1203.
    by BB Aldridge, JM Burke, DA Lauffenburger, PK Sorger
    posted to ms2007 by burkey on 2007-08-22 20:51:17 as ** along with 5 people and 5 groups mattjb mhucka jaycopeland cdppublications shikin ComplexAdaptiveSystems DSTO-CAS SorgerLab CDP GeneGo
  • Many cuts to ruin: a comprehensive update of caspase substrates
    Cell Death Differ, Vol. 10, No. 1. (2003), pp. 76-76-100.
    by U Fischer, RU Janicke, K Schulze-Osthoff
    posted to ms2007 by burkey on 2007-08-22 20:25:15 as **
  • A matter of life and death.
    Cancer Cell, Vol. 1, No. 1. (February 2002), pp. 19-30.
    by DR Green, G Evan
    posted to ms2007 by burkey on 2007-08-22 17:14:37 as **
  • Molecular Biology of the Cell
    (2002)
    by B Alberts, A Johnson, J Lewis, M Raff, K Roberts, P Walter
    posted to ms2007 by burkey on 2007-08-21 22:51:08 as **
  • Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8.
    Biochem J, Vol. 350 Pt 2 (1 September 2000), pp. 563-568.
    by HR Stennicke, M Renatus, M Meldal, GS Salvesen
    posted to ms2007 by burkey on 2007-08-21 21:48:54 as **
  • Purification and catalytic properties of human caspase family members.
    Cell Death Differ, Vol. 6, No. 4. (April 1999), pp. 362-369.
    by M Garcia-Calvo, EP Peterson, DM Rasper, JP Vaillancourt, R Zamboni, DW Nicholson, NA Thornberry
    posted to ms2007 by burkey on 2007-08-21 21:42:54 as **
  • Analysis of the composition, assembly kinetics and activity of native Apaf-1 apoptosomes.
    EMBO J, Vol. 23, No. 10. (19 May 2004), pp. 2134-2145.
    by MM Hill, C Adrain, PJ Duriez, EM Creagh, SJ Martin
    posted to ms2007 by burkey on 2007-08-21 21:37:18 as **
  • Pro-apoptotic proteins released from the mitochondria regulate the protein composition and caspase-processing activity of the native Apaf-1/caspase-9 apoptosome complex.
    J Biol Chem, Vol. 279, No. 19. (7 May 2004), pp. 19665-19682.
    by D Twiddy, DG Brown, C Adrain, R Jukes, SJ Martin, GM Cohen, M Macfarlane, K Cain
    posted to ms2007 by burkey on 2007-08-21 21:28:35 as **
  • Formation of apoptosome is initiated by cytochrome c-induced dATP hydrolysis and subsequent nucleotide exchange on Apaf-1.
    Proc Natl Acad Sci U S A, Vol. 102, No. 49. (6 December 2005), pp. 17545-17550.
    by HE Kim, F Du, M Fang, X Wang
    posted to ms2007 by burkey on 2007-08-21 21:25:32 as **
  • Smac, a mitochondrial protein that promotes cytochrome c-dependent caspase activation by eliminating IAP inhibition.
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 33-42.
    by C Du, M Fang, Y Li, L Li, X Wang
    posted to ms2007 by burkey on 2007-08-21 21:16:42 as **
  • Identification of DIABLO, a mammalian protein that promotes apoptosis by binding to and antagonizing IAP proteins.
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 43-53.
    by AM Verhagen, PG Ekert, M Pakusch, J Silke, LM Connolly, GE Reid, RL Moritz, RJ Simpson, DL Vaux
    posted to ms2007 by burkey on 2007-08-21 21:09:00 as ** along with 1 person ea
  • Cytochrome c and dATP-dependent formation of Apaf-1/caspase-9 complex initiates an apoptotic protease cascade.
    Cell, Vol. 91, No. 4. (14 November 1997), pp. 479-489.
    by P Li, D Nijhawan, Budihardjo, SM Srinivasula, M Ahmad, ES Alnemri, X Wang
    posted to ms2007 by burkey on 2007-08-21 21:04:38 as ** along with 1 person ea
  • Bid, Bax, and lipids cooperate to form supramolecular openings in the outer mitochondrial membrane.
    Cell, Vol. 111, No. 3. (1 November 2002), pp. 331-342.
    by T Kuwana, MR Mackey, G Perkins, MH Ellisman, M Latterich, R Schneiter, DR Green, DD Newmeyer
    posted to ms2007 by burkey on 2007-08-21 20:50:05 as **
  • Bcl-2 prevents Bax oligomerization in the mitochondrial outer membrane.
    J Biol Chem, Vol. 276, No. 21. (25 May 2001), pp. 18361-18374.
    by V Mikhailov, M Mikhailova, DJ Pulkrabek, Z Dong, MA Venkatachalam, P Saikumar
    posted to ms2007 by burkey on 2007-08-21 20:46:05 as **
  • Bcl-2 heterodimerizes in vivo with a conserved homolog, Bax, that accelerates programmed cell death.
    Cell, Vol. 74, No. 4. (27 August 1993), pp. 609-619.
    by ZN Oltvai, CL Milliman, SJ Korsmeyer
    posted to ms2007 by burkey on 2007-08-21 20:39:42 as **
  • Bid induces the oligomerization and insertion of Bax into the outer mitochondrial membrane.
    Mol Cell Biol., Vol. 20, No. 3. (February 2000), pp. 929-935.
    by R Eskes, S Desagher, B Antonsson, JC Martinou
    posted to ms2007 by burkey on 2007-08-21 20:36:21 as **
  • Mcl-1 interacts with truncated Bid and inhibits its induction of cytochrome c release and its role in receptor-mediated apoptosis.
    J Biol Chem, Vol. 281, No. 9. (3 March 2006), pp. 5750-5759.
    by JG Clohessy, J Zhuang, J de Boer, G Gil-Gómez, Brady
    posted to ms2007 by burkey on 2007-08-21 20:30:54 as **
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