cajunsushi's library 50 articles Export

	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to transcription combinatorial by cajunsushi on 2009-11-23 23:21:25 as along with 11 people emptyhb toszko roys inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten pedrobeltrao
	Exome sequencing identifies the cause of a mendelian disorder [My Copy] Nature Genetics, Vol. advance online publication (13 November 2009) by Sarah B. Ng, Kati J. Buckingham, Choli Lee, et al.Abigail W. Bigham, Holly K. Tabor, Karin M. Dent, Chad D. Huff, Paul T. Shannon, Ethylin W. Jabs, Deborah A. Nickerson, Jay Shendure, Michael J. Bamshad posted to sequencing postdoc miller_syndrome genetic exome by cajunsushi on 2009-11-18 19:59:36 as along with 5 people pst seb1 daforerog Peiyong psique
	Cooperative-Binding and Splicing-Repressive Properties of hnRNP A1 [My Copy] Mol. Cell. Biol., Vol. 29, No. 20. (15 October 2009), pp. 5620-5631. by Hazeem L. Okunola, Adrian R. Krainer posted to spreading hnrnp cooperative_binding a1 by cajunsushi on 2009-11-17 02:53:58 as
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to rna-seq review chip-seq by cajunsushi on 2009-11-17 02:50:25 as along with 23 people and 2 groups urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations [My Copy] RNA (22 October 2009) by Tadashi Kawashima, Matteo Pellegrini, Guillaume F. Chanfreau posted to splice_factor nmd double_knockdown by cajunsushi on 2009-11-17 02:44:19 as
	Next-generation SELEX identifies sequence and structural determinants of splicing factor binding in human pre-mRNA sequence [My Copy] RNA (27 October 2009) by Daniel C. Reid, Brian L. Chang, Samuel I. Gunderson, Lauren Alpert, William A. Thompson, William G. Fairbrother posted to u1snrnp selex ptb ip by cajunsushi on 2009-11-17 02:42:40 as
	Computational prediction of splicing regulatory elements shared by Tetrapoda organisms [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 508. by Alexander Churbanov, Igor Vorechovsky, Chindo Hicks posted to srs computational_prediction by cajunsushi on 2009-11-17 02:38:20 as
	Genome-wide mapping of alternative splicing in Arabidopsis thaliana [My Copy] Genome Research (26 October 2009) by Sergei A. Filichkin, Henry D. Priest, Scott A. Givan, et al.Rongkun Shen, Douglas W. Bryant, Samuel E. Fox, Weng-Keen Wong, Todd C. Mockler posted to rust rna-seq nmd arabidopsis by cajunsushi on 2009-11-17 02:29:39 as along with 4 people bpcusack kshameer GeeSharpMinor natstreet
	High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R101. by Arun Ramani, Andrew Nelson, Philipp Kapranov, Ian Bell, Thomas Gingeras, Andrew Fraser posted to worm transcriptome nmd development by cajunsushi on 2009-11-17 00:57:27 as along with 1 group Journal picks
	Epistasis and its implications for personal genetics. [My Copy] American journal of human genetics, Vol. 85, No. 3. (11 September 2009), pp. 309-320. by Jason H. Moore, Scott M. Williams posted to high_throughput genetic_association_studies epistasis by cajunsushi on 2009-10-06 23:43:18 as along with 7 people chriswillmott daveGerrard guhjy daed pkonings daforerog jdbowes
	The Significance of Digital Gene ExpressionâProfiles [My Copy] Genome Research, Vol. 7, No. 10. (1 October 1997), pp. 986-995. by StÃ©phane Audic, Jean-Michel Claverie posted to gene expression differential by cajunsushi on 2009-10-01 01:53:45 as along with 5 people heliopais jmeppley dandaman fhalbrit gpappas
	Multiple and Specific mRNA Processing Targets for the Major Human hnRNP Proteins [My Copy] Mol. Cell. Biol., Vol. 28, No. 19. (1 October 2008), pp. 6033-6043. by Julian P. Venables, Chu-Shin Koh, Ulrike Froehlich, et al.Elvy Lapointe, Sonia Couture, Lyna Inkel, Anne Bramard, Eric R. Paquet, Valerie Watier, Mathieu Durand, Jean-Francois Lucier, Julien Gervais-Bird, Karine Tremblay, Panagiotis Prinos, Roscoe Klinck, Sherif A. Elela, Benoit Chabot posted to hnrnp by cajunsushi on 2009-09-29 19:57:13 as
	Identifiability of isoform deconvolution from junction arrays and RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3056-3059. by David Hiller, Hui Jiang, Weihong Xu, Wing H. Wong posted to rna-seq microarrays isoform by cajunsushi on 2009-09-25 18:04:05 as along with 5 people and 2 groups jwfoley djkt hzoltan ghattem GeeSharpMinor Journal picks SIMR bioinformatics
	Splice site strength\|[ndash]\|dependent activity and genetic buffering by poly-G runs [My Copy] Nature Structural & Molecular Biology, Vol. advance online publication (13 September 2009) by Xinshu Xiao, Zefeng Wang, Minyoung Jang, Razvan Nutiu, Eric T. Wang, Christopher B. Burge posted to rna-seq hnrnp by cajunsushi on 2009-09-19 00:35:09 as
	Common Regulatory Variation Impacts Gene Expression in a Cell Type-Dependent Manner [My Copy] Science, Vol. 325, No. 5945. (4 September 2009), pp. 1246-1250. by Antigone S. Dimas, Samuel Deutsch, Barbara E. Stranger, et al.Stephen B. Montgomery, Christelle Borel, Homa Attar-Cohen, Catherine Ingle, Claude Beazley, Maria G. Arcelus, Magdalena Sekowska, Marilyne Gagnebin, James Nisbett, Panos Deloukas, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis posted to variation postdoc genetic gene expression by cajunsushi on 2009-09-15 17:58:17 as along with 12 people vplagnol ajbattle xianjun kintoki TRHvidsten djkt fenghezi rdiaz humburg guhjy frohike SeaBird
	Nucleosomes are well positioned in exons and carry characteristic histone modifications [My Copy] Genome Research, Vol. 19, No. 10. (18 October 2009), pp. 1732-1741. by Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski posted to splicing nucleosome histone by cajunsushi on 2009-09-08 18:11:06 as along with 7 people xianjun owhitney lp2 megraw djkt fenghezi inesdesantiago
	Studying alternative splicing regulatory networks through partial correlation analysis [My Copy] Genome Biology, Vol. 10, No. 1. (2009), R3. by Liang Chen, Sika Zheng posted to splicing networks by cajunsushi on 2009-09-04 18:29:32 as along with 3 people lptolik daforerog pengchy
	Modulation of alternative splicing by long-range RNA structures in Drosophila [My Copy] Nucl. Acids Res., Vol. 37, No. 14. (1 August 2009), pp. 4533-4544. by Veronica A. Raker, Andrei A. Mironov, Mikhail S. Gelfand, Dmitri D. Pervouchine posted to structure rna regulation drosophila by cajunsushi on 2009-08-28 17:12:59 as
	The CUGBP2 Splicing Factor Regulates an Ensemble of Branchpoints from Perimeter Binding Sites with Implications for Autoregulation [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000595. by Jill A. Dembowski, Paula J. Grabowski posted to splice_factor motif binding by cajunsushi on 2009-08-26 04:07:47 as
	Systematic analysis of alternative promoters correlated with alternative splicing in human genes [My Copy] Genomics, Vol. 93, No. 5. (May 2009), pp. 420-425. by Xiaojuan Ma, Jesse Li-Ling, Qianli Huang, Xi Chen, Lin Hou, Fei Ma posted to alternative human promoter splicing by cajunsushi on 2009-08-10 17:59:32 as
	Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing [My Copy] BMC Genomics, Vol. 10, No. Suppl 1. (2009), S4. by Xin Wang, Kejun Wang, Milan Radovich, et al.Yue Wang, Guohua Wang, Weixing Feng, Jeremy Sanford, Yunlong Liu posted to splicing srs tissue by cajunsushi on 2009-07-31 20:25:13 as
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted to regulation sequence transcription by cajunsushi on 2009-07-29 21:07:38 as along with 16 people and 1 group pkm ptrobajo rdiaz bborgeson guhjy sergiun emptyhb greg Borelli leliavski TRHvidsten jjray apocapoc fenghezi dswan daforerog Gene Regulation
	Identification of mRNA binding proteins that regulate the stability of LDL receptor mRNA through AU-rich elements. [My Copy] Journal of lipid research, Vol. 50, No. 5. (May 2009), pp. 820-831. by H. Li, W. Chen, Y. Zhou, et al.P. Abidi, O. Sharpe, W. H. Robinson, F. B. Kraemer, J. Liu posted to hnrnp srs by cajunsushi on 2009-07-10 21:45:00 as
	Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA. [My Copy] The Journal of biological chemistry, Vol. 284, No. 21. (22 May 2009), pp. 14303-14315. by B. Heinrich, Z. Zhang, O. Raitskin, et al.M. Hiller, N. Benderska, A. M. Hartmann, L. Bracco, D. Elliott, S. Ben-Ari, H. Soreq, J. Sperling, R. Sperling, S. Stamm posted to alternative cluster hnrnp splice_factor by cajunsushi on 2009-07-10 21:35:54 as
	Noncanonical RNAs From Transcripts of the Drosophila muscleblind Gene [My Copy] J Hered, Vol. 97, No. 3. (1 May 2006), pp. 253-260. by Jonathan M. Houseley, Zaida Garcia-Casado, Maya Pascual, et al.Nuria Paricio, Kevin M. C. O'Dell, Darren G. Monckton, Ruben D. Artero posted to no-tag by cajunsushi on 2009-07-09 01:32:07 as
	Evolution of Alternative Splicing Regulation: Changes in Predicted Exonic Splicing Regulators Are Not Associated with Changes in Alternative Splicing Levels in Primates [My Copy] PLoS ONE, Vol. 4, No. 6. (4 June 2009), e5800. by Manuel Irimia, Jakob L. Rukov, Scott W. Roy posted to evolution srs by cajunsushi on 2009-06-12 21:42:18 as
	A physical and functional link between splicing factors promotes pre-mRNA 3' end processing [My Copy] Nucl. Acids Res. (8 June 2009), gkp470. by Stefania Millevoi, Adrien Decorsiere, Clarisse Loulergue, et al.Jason Iacovoni, Sandra Bernat, Michael Antoniou, Stephan Vagner posted to polya ptb by cajunsushi on 2009-06-12 21:41:29 as
	Transcript length bias in RNA-seq data confounds systems biology. [My Copy] Biology direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew J. Wakefield posted to bias length rna-seq by cajunsushi on 2009-04-24 22:55:35 as along with 14 people and 1 group hzoltan manduca jwfoley juokcho debasis stubrown dswan jmcq guhjy woodson8 n00c ghattem xingxu bandrewfox SIMR bioinformatics
	Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes [My Copy] PLoS Biol, Vol. 7, No. 3. (3 March 2009), e1000048. by Sabine P. Schrimpf, Manuel Weiss, Lukas Reiter, et al.Christian H. Ahrens, Marko Jovanovic, Johan Malmström, Erich Brunner, Sonali Mohanty, Martin J. Lercher, Peter E. Hunziker, Ruedi Aebersold, Christian von Mering, Michael O. Hengartner posted to drosophila proteome by cajunsushi on 2009-03-20 17:09:51 as along with 10 people and 1 group aktas robfsouza ogishima coela gurprit_raunu biomcgary gerodono idoerg renatomilani bpcusack Marcotte_Lab
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to chip-seq conservation enhancer specific tissue by cajunsushi on 2009-02-27 16:06:33 as along with 23 people and 2 groups hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to finder motif phylogibbs by cajunsushi on 2009-02-19 19:13:11 as along with 17 people and 3 groups farhat wowalz aprasad treangen druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson yevishere isimpson structural_bioinformatics Bioinformatics EBI-regulation
	Sexual Back Talk With Evolutionary Implications: Stimulation of the Drosophila Sex-Determination Gene Sex-lethal by Its Target transformer [My Copy] Genetics, Vol. 180, No. 4. (1 December 2008), pp. 1963-1981. by Scott G. Siera, Thomas W. Cline posted to drosophila motif regulation splicing sxl tra by cajunsushi on 2009-02-06 20:07:22 as along with 1 person CharlesM
	Ab initio identification of functionally interacting pairs of cis-regulatory elements — Genome Research [My Copy] posted to no-tag by cajunsushi on 2009-02-05 01:33:58 as
	Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. [My Copy] Genome Biol, Vol. 5, No. 9. (2004) by B. P. Berman, B. D. Pfeiffer, T. R. Laverty, et al.S. L. Salzberg, G. M. Rubin, M. B. Eisen, S. E. Celniker posted to cluster conservation drosophila transcription by cajunsushi on 2009-02-05 01:29:10 as along with 9 people and 3 groups emptyhb mbeisen indigoviolet adepace Stew nklee cisevol maximilianh Auger EisenLab cis-regulatory-evolution Dead 60's
	Genome-wide analysis of transcript isoform variation in humans [My Copy] Nat Genet, Vol. 40, No. 2. (13 February 2008), pp. 225-231. by Tony Kwan, David Benovoy, Christel Dias, et al.Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J. Hudson, Rob Sladek, Jacek Majewski posted to human snp splicing variation by cajunsushi on 2009-01-26 08:21:18 as along with 11 people ericrpaquet athma inesdesantiago GeeSharpMinor nicholso jo_davies caseybrown stoffreg meiklej vplagnol guhjy
	Posttranscriptional regulation of miRNAs harboring conserved terminal loops. [My Copy] Molecular cell, Vol. 32, No. 3. (7 November 2008), pp. 383-393. by G. Michlewski, S. Guil, C. A. Semple, J. F. Cáceres posted to hnrnp micrornas by cajunsushi on 2009-01-23 16:46:50 as along with 2 people bmduggan valeriehilgers
	Evolution of Regulatory Sequences in 12 Drosophila Species [My Copy] PLoS Genet, Vol. 5, No. 1. (January 2009), e1000330. by Jaebum Kim, Xin He, Saurabh Sinha posted to binding conservation drosophila evolution transcription by cajunsushi on 2009-01-09 23:00:18 as along with 12 people and 3 groups daveGerrard kevinemamy dpollard caseybrown druvus WanderingAengus JustinCrocker cisevol djkt emptyhb cabbagesofdoom Stew RockmanLab BergmanLab cis-regulatory-evolution
	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif — Genome Research [My Copy] posted to binding conservation motif transcription by cajunsushi on 2008-12-17 19:34:42 as
	Splicing Factors Facilitate RNAi-Directed Silencing in Fission Yeast [My Copy] Science, Vol. 322, No. 5901. (24 October 2008), pp. 602-606. by Elizabeth H. Bayne, Manuela Portoso, Alexander Kagansky, et al.Isabelle C. Kos-Braun, Takeshi Urano, Karl Ekwall, Flavia Alves, Juri Rappsilber, Robin C. Allshire posted to rnai splice_factor by cajunsushi on 2008-11-18 18:24:33 as along with 1 person gfliustu
	Conservation of the protein composition and electron microscopy structure of Drosophila melanogaster and human spliceosomal complexes. [My Copy] Molecular and cellular biology, Vol. 29, No. 1. (3 January 2009), pp. 281-301. by Nadine Herold, Cindy L. Will, Elmar Wolf, Berthold Kastner, Henning Urlaub, Reinhard Lührmann posted to em fly hnrnp intron length spliceosome sr by cajunsushi on 2008-11-07 20:36:50 as along with 1 person ongenetics
	Regions of extreme synonymous codon selection in mammalian genes [My Copy] Nucleic Acids Research, Vol. 34, No. 6. (2006), pp. 1700-1710. by Peter Schattner, Mark Diekhans posted to codon conservation exon motif synonymous by cajunsushi on 2008-11-06 19:33:38 as
	Widespread changes in protein synthesis induced by microRNAs [My Copy] Nature, Vol. 455, No. 7209. (30 July 2008), pp. 58-63. by Matthias Selbach, Bjorn Schwanhausser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky posted to jc micrornas translation by cajunsushi on 2008-10-21 18:32:45 as along with 26 people and 2 groups dandaman framancuso inesdesantiago lwaldron danaiancu fishtank dswan TRHvidsten pengchy valeriehilgers druvus guhjy martin-novak heliopais vertikalist jfr caizhiqiang psique megraw neils j_rodriguez erel10 maralena reyez mtagaya gdb microRNA BTS-PT-AS-CS
	Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF [My Copy] PLoS ONE, Vol. 3, No. 10. (October 2008), e3369. by Jeremy R. Sanford, Pedro Coutinho, Jamie A. Hackett, Xin Wang, William Ranahan, Javier F. Caceres posted to binding clip splice_factor sr by cajunsushi on 2008-10-16 23:51:06 as
	On/off regulation of gene expression at the level of splicing [My Copy] Trends in Genetics, Vol. 4, No. 5. (May 1988), pp. 134-138. by Paul M. Bingham, Tze-Bin Chou, Inka Mims, Zuzana Zachar posted to drosophila intron length rust by cajunsushi on 2008-09-11 23:59:51 as
	Global analysis of patterns of gene expression during Drosophila embryogenesis [My Copy] Genome Biology, Vol. 8 (23 July 2007), R145. by Pavel Tomancak, Benjamin P. Berman, Amy Beaton, et al.Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E. Celniker, Gerald M. Rubin posted to expression gene in-situ microarray by cajunsushi on 2008-09-10 20:00:47 as along with 4 people and 1 group emptyhb benlansdel dpollard caseybrown EisenLab
	Tissue-specific splicing factor gene expression signatures [My Copy] Nucl. Acids Res. (24 July 2008), gkn463. by Ana R. Grosso, Anita Q. Gomes, Nuno L. Barbosa-Morais, et al.Sandra Caldeira, Natalie P. Thorne, Godfrey Grech, Marieke von Lindern, Maria Carmo-Fonseca posted to expression profile splice_factor by cajunsushi on 2008-09-10 17:56:52 as along with 4 people burak inesdesantiago jfr aconesa
	Conserved RNA secondary structures promote alternative splicing -- Shepard and Hertel 14 (8): 1463 -- RNA [My Copy] posted to no-tag by cajunsushi on 2008-08-15 22:03:01 as
	Intron definition in splicing of small Drosophila introns. [My Copy] Mol. Cell. Biol., Vol. 14, No. 5. (1 May 1994), pp. 3434-3445. by M. Talerico, S. M. Berget posted to intron length pyrimidine-rich small spliceosome splice_site by cajunsushi on 2008-08-14 03:14:17 as
	Regulation of CD45 Alternative Splicing by Heterogeneous Ribonucleoprotein, hnRNPLL [My Copy] Science, Vol. 321, No. 5889. (1 August 2008), pp. 686-691. by Shalini Oberdoerffer, Luis F. Moita, Daniel Neems, Rui P. Freitas, Nir Hacohen, Anjana Rao posted to affy array exon factor hnrnp knockdown splicing by cajunsushi on 2008-08-08 20:25:41 as along with 2 people arthurkoestler austin
	DEDB: a database of Drosophila melanogaster exons in splicing graph form. [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (7 December 2004) by B. T. Lee, T. W. Tan, S. Ranganathan posted to alternative common database dedb drosophila splicing by cajunsushi on 2008-07-18 23:01:07 as along with 2 people greg setar

Note: You may cite this page as: http://www.citeulike.org/user/cajunsushi

hnrnp	8
splicing	8
drosophila	7
splice_factor	6
conservation	5
motif	5
rna-seq	5
transcription	5
binding	4
expression	4
length	4
srs	4
alternative	3
gene	3
intron	3
nmd	3
regulation	3
chip-seq	2
cluster	2
evolution	2
exon	2
genetic	2
human	2
micrornas	2
postdoc	2
ptb	2
rust	2
spliceosome	2
sr	2
tissue	2
variation	2
a1	1
affy	1
arabidopsis	1
array	1
bias	1
clip	1
codon	1
combinatorial	1
common	1
computational_prediction	1
cooperative_binding	1
database	1
dedb	1
development	1
differential	1
double_knockdown	1
em	1
enhancer	1
epistasis	1
exome	1
factor	1
finder	1
fly	1
genetic_association_studies	1
high_throughput	1
histone	1
in-situ	1
ip	1
isoform	1
jc	1
knockdown	1
microarray	1
microarrays	1
miller_syndrome	1
networks	1
nucleosome	1
phylogibbs	1
polya	1
profile	1
promoter	1
proteome	1
pyrimidine-rich	1
review	1
rna	1
rnai	1
selex	1
sequence	1
sequencing	1
small	1
snp	1
specific	1
splice_site	1
spreading	1
structure	1
sxl	1
synonymous	1
tra	1
transcriptome	1
translation	1
u1snrnp	1
worm	1

cajunsushi's library 50 articles Export

cajunsushi's tags