capitall's library 54 articles Export

	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted to bioinformatics book-chapter cytoscape by capitall on 2009-03-24 17:18:41 as along with 33 people and 3 groups daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 higueruelo shikin daforerog cswinburne thomaskelder nolodie giovenko Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
	DAVID: Database for Annotation, Visualization, and Integrated Discovery [My Copy] Genome Biology, Vol. 4, No. 5. (2003), P3. by Glynn Dennis, Brad Sherman, Douglas Hosack, et al.Jun Yang, Wei Gao, H. Clifford Lane, Richard Lempicki posted to chapter ease mev microarray by capitall on 2009-02-22 16:07:30 as along with 6 people ipark-kaist VGreiff bertelsen incovoma beete guhjy
	GeneNet: a gene network database and its automated visualization. [My Copy] Bioinformatics (Oxford, England), Vol. 14, No. 6. (1998), pp. 529-537. by F. A. Kolpakov, E. A. Ananko, G. B. Kolesov, N. A. Kolchanov posted to genenet statistics by capitall on 2009-01-17 20:10:03 as
	Using regularized dynamic correlation to infer gene dependency networks from time-series microarray data. [My Copy] 4th International Workshop on Computational Systems Biology, WCSB 2006 (June 2006), pp. 73-76. by R. Opgen-Rhein, K. Strimmer edited by Pekka Ruusuvuori, Tiina Manninen, Heikki Huttunen, Marja-Leena Linne, Olli Yli-Harja posted to genenet by capitall on 2009-01-17 20:08:33 as
	A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics. [My Copy] Statistical applications in genetics and molecular biology, Vol. 4 (2005) by J. Schäfer, K. Strimmer posted to bioinformatics genenet statistics by capitall on 2009-01-17 20:04:00 as along with 3 people tonamswish sona mayercd
	An empirical Bayes approach to inferring large-scale gene association networks [My Copy] Bioinformatics, Vol. 21, No. 6. (15 March 2005), pp. 754-764. by Juliane Schafer, Korbinian Strimmer posted to bioinformatics genenet microarray networks by capitall on 2009-01-17 20:01:41 as along with 5 people abhishek_tiwari mqbphcw3 jo_davies srp33 Borelli
	Inferring gene dependency networks from genomic longitudinal data: a functional data approach. [My Copy] Revstat, Vol. 4, No. 1. (March 2006), pp. 53-56. by Rainer Opgen-Rhein, Korbinian Strimmer posted to bioinformatics genenet networks by capitall on 2009-01-17 19:55:57 as
	Reverse Engineering Genetic Networks using the GeneNet Package [My Copy] R News, Vol. 6/5 (December 2006), pp. 50-53. by Juliane Schaefer, Rainer Opgen-Rhein, Korbinian Strimmer posted to bioinformatics genenet r by capitall on 2009-01-17 19:52:35 as
	From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 37. by Rainer O. Rhein, Korbinian Strimmer posted to bioinformatics correlation genenet networks statistics by capitall on 2009-01-17 19:47:27 as along with 8 people mqbphcw3 roys nolodie druvus wnpx GeeSharpMinor jo_davies heliopais
	Least angle Regression [My Copy] Annals of Statistics, Vol. 32, No. 2. (2004), pp. 407-499. by Bradley Efron, Trevor Hastie, Iain Johnstone, Robert Tibshirani posted to bioinformatics regression statistics by capitall on 2009-01-17 19:20:53 as along with 2 people BrianTomasik casutton
	Least angle and L1 penalized regression: A review [My Copy] Statistics Surveys by Tim C. Hesterberg, Nam H. Choi, Lukas Meier, Chris Fraley posted to bioinformatics glasso lasso regression statistics by capitall on 2009-01-17 19:12:49 as
	Sparse inverse covariance estimation with the graphical lasso [My Copy] Biostat, Vol. 9, No. 3. (1 July 2008), pp. 432-441. by Jerome Friedman, Trevor Hastie, Robert Tibshirani posted to bioinformatics glasso statistics by capitall on 2009-01-17 19:07:07 as along with 5 people roys Borelli kliger cjeans tresch
	MicroRNA targets in Drosophila. [My Copy] Genome Biol, Vol. 5, No. 1. (2003) by A. J. Enright, B. John, U. Gaul, T. Tuschl, C. Sander, D. S. Marks posted to microrna miranda software by capitall on 2008-12-08 21:16:29 as along with 8 people and 1 group wrowell alessandroparini heliopais eckart_bindewald mortenlindow dsm Garamonfok maralena microRNA
	Inhibition of Translational Initiation by Let-7 MicroRNA in Human Cells [My Copy] Science, Vol. 309, No. 5740. (02 September 2005), pp. 1573-1576. by Ramesh S. Pillai, Suvendra N. Bhattacharyya, Caroline G. Artus, et al.Tabea Zoller, Nicolas Cougot, Eugenia Basyuk, Edouard Bertrand, Witold Filipowicz posted to mechanisms microrna by capitall on 2008-11-30 23:59:42 as along with 4 people and 2 groups daforerog dayjm dchughes faion G4ID Genetics-of-Gambling
	Tethered-function analysis reveals that elF4E can recruit ribosomes independent of its binding to the cap structure. [My Copy] RNA (New York, N.Y.), Vol. 7, No. 1. (January 2001), pp. 106-113. by E. De Gregorio, J. Baron, T. Preiss, M. W. Hentze posted to ires microrna by capitall on 2008-11-30 23:57:10 as
	Natural selection on human microRNA binding sites inferred from SNP data. [My Copy] Nat Genet (29 October 2006) by Kevin Chen, Nikolaus Rajewsky posted to microrna by capitall on 2008-11-28 23:07:53 as along with 13 people and 3 groups emptyhb provero lp2 jfr tardigrade andersbj mtagaya ealloza plofje Garamonfok heliopais bpcusack ramensky Bioinformatics microRNA BioinfoCIPF
	MicroRNA Inhibition of Translation Initiation in Vitro by Targeting the Cap-Binding Complex eIF4F. [My Copy] Science (26 July 2007) by Géraldine Mathonnet, Marc R R. Fabian, Yuri V V. Svitkin, et al.Armen Parsyan, Laurent Huck, Takayuki Murata, Stefano Biffo, William C C. Merrick, Edward Darzynkiewicz, Ramesh S S. Pillai, Thomas F F. Duchaine, Nahum Sonenberg posted to mechanisms microrna by capitall on 2008-11-28 23:07:04 as along with 2 people and 1 group andersbj sebastien_vigneau microRNA
	miRNAs in cancer: approaches, aetiology, diagnostics and therapy. [My Copy] Hum Mol Genet, Vol. 16 Spec No 1 (15 April 2007) by C. Blenkiron, E. A. Miska posted to cancer microrna review by capitall on 2008-11-28 23:04:08 as along with 3 people OKA Stew guhjy
	Microarray analysis and tumor classification. [My Copy] N Engl J Med, Vol. 354, No. 23. (8 June 2006), pp. 2463-2472. by J. Quackenbush posted to cancer compbio microarray by capitall on 2008-11-28 22:39:02 as along with 3 people and 1 group maryee jeremymiller frohike GeschwindLab
	miRecords: an integrated resource for microRNA-target interactions [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D105-110. by Feifei Xiao, Zhixiang Zuo, Guoshuai Cai, Shuli Kang, Xiaolian Gao, Tongbin Li posted to bioinformatics database mirna by capitall on 2008-11-26 17:03:33 as along with 8 people and 3 groups Zephyrus jfr nuin heliopais ealloza yyby moleopard guhjy Roswell Cancer Crosstalk microRNA microRNA database
	Mechanisms of microRNA deregulation in human cancer. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 7, No. 17. (1 September 2008), pp. 2643-2646. by S. Deng, G. A. Calin, C. M. Croce, G. Coukos, L. Zhang posted to cancer mirna ovarian-cancer by capitall on 2008-11-23 22:32:03 as along with 2 people valeriehilgers jsnowdon
	Role of microRNAs in drug-resistant ovarian cancer cells. [My Copy] Gynecologic oncology (25 September 2008) by Antonio Sorrentino, Chang-Gong G. Liu, Antonio Addario, Cesare Peschle, Giovanni Scambia, Cristiano Ferlini posted to microrna ovarian-cancer platinum by capitall on 2008-11-23 22:30:26 as along with 1 person and 1 group tonamswish microRNA
	Genetic Analysis of Cancer-Implicated MicroRNA in Ovarian Cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 22. (15 November 2008), pp. 7246-7250. by J. L. Bearfoot, D. Y. Choong, K. L. Gorringe, I. G. Campbell posted to mirna ovarian-cancer somatic-mutation by capitall on 2008-11-23 22:28:25 as along with 1 person tonamswish
	Accumulation of pre-tRNA splicing '2/3' intermediates in a Saccharomyces cerevisiae mutant. [My Copy] The EMBO journal, Vol. 9, No. 4. (April 1990), pp. 1245-1252. by C. K. Ho, R. Rauhut, U. Vijayraghavan, J. Abelson posted to mirna by capitall on 2008-11-23 16:36:36 as
	Extensive post-transcriptional regulation of microRNAs and its implications for cancer [My Copy] Genes & Development, Vol. 20, No. 16. (15 August 2006), pp. 2202-2207. by J. Michael Thomson, Martin Newman, Joel S. Parker, Elizabeth M. Morin-Kensicki, Tricia Wright, Scott M. Hammond posted to cancer drosha mirna by capitall on 2008-11-23 16:32:34 as along with 6 people and 1 group heliopais natstreet tardigrade mtagaya bootsy maralena microRNA
	CpG Island Hypermethylation of Tumor Suppressor microRNAs in Human Cancer. [My Copy] Cell Cycle, Vol. 6, No. 12. (4 May 2007) by Amaia Lujambio, Manel Esteller posted to cancer dna-methylation mirna by capitall on 2008-11-22 18:38:29 as along with 1 person and 1 group andersbj microRNA
	Repression of protein synthesis by miRNAs: how many mechanisms? [My Copy] Trends Cell Biol (29 December 2006) by Ramesh S S. Pillai, Suvendra N N. Bhattacharyya, Witold Filipowicz posted to microrna review by capitall on 2008-11-22 17:58:28 as along with 8 people and 5 groups Lauren_Jones bala tardigrade andersbj dchughes cdawson heliopais maralena microRNA G4ID DictyosteliumGroup GIG Genetics-of-Gambling
	Surface epithelial-stromal tumor - Wikipedia, the free encyclopedia [My Copy] Wikipedia posted to ovarian-cancer by capitall on 2008-11-22 17:42:49 as
	Differential processing of neuropeptides influences Drosophila heart rate. [My Copy] Journal of neurogenetics, Vol. 13, No. 1-2. (June 1999), pp. 89-104. by R. Nichols, J. McCormick, M. Cohen, et al.E. Howe, C. Jean, K. Paisley, C. Rosario posted to mine by capitall on 2008-11-22 16:58:52 as
	MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms. [My Copy] Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3324-3326. by A. Djebbari, S. Karamycheva, E. Howe, J. Quackenbush posted to bioinformatics compbio mesher microarray mine by capitall on 2008-11-22 16:57:25 as along with 1 person guhjy
	Physiogenomic resources for rat models of heart, lung and blood disorders [My Copy] Nature Genetics, Vol. 38, No. 2. (15 January 2006), pp. 234-239. by Renae L. Malek, Hong-Ying Wang, Anne E. Kwitek, et al.Andrew S. Greene, Nirmal Bhagabati, Gretta Borchardt, Lisa Cahill, Tracey Currier, Bryan Frank, Xianping Fu, Michael Hasinoff, Eleanor Howe, Noah Letwin, Truong V. Luu, Alexander Saeed, Hedieh Sajadi, Steven L. Salzberg, Razvan Sultana, Mathangi Thiagarajan, Jennifer Tsai, Kathleen Veratti, Joseph White, John Quackenbush, Howard J. Jacob, Norman H. Lee posted to bioinformatics microarray mine by capitall on 2008-11-22 16:56:44 as
	MicroRNA epigenetic alterations in human cancer: one step forward in diagnosis and treatment. [My Copy] Int J Cancer, Vol. 122, No. 5. (1 March 2008), pp. 963-968. by N. Yang, G. Coukos, L. Zhang posted to mirna ovarian-cancer by capitall on 2008-11-17 01:42:25 as along with 4 people and 1 group valeriehilgers frohike srp33 maralena Bioinformatics
	Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 19. (13 May 2008), pp. 7004-7009. by Lin Zhang, Stefano Volinia, Tomas Bonome, et al.George A. Calin, Joel Greshock, Nuo Yang, Chang-Gong Liu, Antonis Giannakakis, Pangiotis Alexiou, Kosei Hasegawa, Cameron N. Johnstone, Molly S. Megraw, Sarah Adams, Heini Lassus, Jia Huang, Sippy Kaur, Shun Liang, Praveen Sethupathy, Arto Leminen, Victor A. Simossis, Raphael Sandaltzopoulos, Yoshio Naomoto, Dionyssios Katsaros, Phyllis A. Gimotty, Angela Demichele, Qihong Huang, Ralf Bützow, Anil K. Rustgi, Barbara L. Weber, Michael J. Birrer, Artemis G. Hatzigeorgiou, Carlo M. Croce, George Coukos posted to mirna ovarian-cancer by capitall on 2008-11-17 01:40:24 as along with 4 people and 1 group tonamswish ealloza maralena bootsy microRNA
	MicroRNA Expression Profiling in Human Ovarian Cancer: miR-214 Induces Cell Survival and Cisplatin Resistance by Targeting PTEN [My Copy] Cancer Res, Vol. 68, No. 2. (15 January 2008), pp. 425-433. by Hua Yang, William Kong, Lili He, et al.Jian-Jun Zhao, Joshua D. O'Donnell, Jiawang Wang, Robert M. Wenham, Domenico Coppola, Patricia A. Kruk, Santo V. Nicosia, Jin Q. Cheng posted to mirna ovarian-cancer by capitall on 2008-11-11 01:57:03 as along with 2 people and 1 group tonamswish valeriehilgers microRNA
	Ontology annotation: mapping genomic regions to biological function. [My Copy] Curr Opin Chem Biol, Vol. 11, No. 1. (February 2007), pp. 4-11. by P. D. Thomas, H. Mi, S. Lewis posted to bioinformatics go by capitall on 2008-06-24 21:22:23 as along with 1 person guhjy
	Computational methods for analysis of cellular functions and pathways collectively targeted by differentially expressed microRNA [My Copy] Methods In MicroRNAs: Part B, Vol. 44, No. 1. (January 2008), pp. 61-72. by Yuriy Gusev posted to bioinformatics cancer microarray mirna by capitall on 2008-06-23 18:37:44 as along with 3 people jfr guhjy maralena
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to bioinformatics go by capitall on 2008-06-23 18:22:00 as along with 36 people and 3 groups druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani marck rvosa bpcusack 8_01 logics of knowledge FAB-lab
	Functional classification analysis of somatically mutated genes in human breast and colorectal cancers. [My Copy] Genomics, Vol. 91, No. 6. (21 June 2008), pp. 508-511. by T. W. Chittenden, E. A. Howe, A. C. Culhane, et al.R. Sultana, J. M. Taylor, C. Holmes, J. Quackenbush posted to bioinformatics cancer classification microarray mine by capitall on 2008-06-23 18:14:28 as along with 2 people jfr fpattyn
	K-ary clustering with optimal leaf ordering for gene expression data [My Copy] Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1070-1078. by Ziv Bar-Joseph, Erik D. Demaine, David K. Gifford, Nathan Srebro, Angele M. Hamel, Tommi S. Jaakkola posted to bioinformatics clustering mev microarray by capitall on 2008-03-10 15:41:39 as along with 2 people isimpson tmmurali
	Fast optimal leaf ordering for hierarchical clustering. [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001) by Z. Bar-Joseph, D. K. Gifford, T. S. Jaakkola posted to bioinformatics clustering mev by capitall on 2008-03-10 15:41:15 as
	MicroRNA expression profiles classify human cancers. [My Copy] Nature, Vol. 435, No. 7043. (9 June 2005), pp. 834-838. by Jun Lu, Gad Getz, Eric A. Miska, et al.Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L. Ebert, Raymond H. Mak, Adolfo A. Ferrando, James R. Downing, Tyler Jacks, H. Robert Horvitz, Todd R. Golub posted to cancer classification mirna by capitall on 2008-03-07 02:56:13 as along with 14 people and 2 groups tibbitts abhattac cswinburne jfr tmmurali ajeffs tuck mtagaya ealloza frohike maralena giovenko srp33 zhouyu Bioinformatics microRNA
	A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. [My Copy] Nature genetics, Vol. 40, No. 2. (27 February 2008), pp. 181-188. by Insuk Lee, Ben Lehner, Catriona Crombie, Wendy Wong, Andrew G. Fraser, Edward M. Marcotte posted to bioinformatics cancer networks by capitall on 2008-02-07 17:06:03 as along with 16 people and 1 group ptrobajo bertelsen thegoose2 AnzaA pegwang koller oryadna tharris guhjy tmmurali balicea roys jiny kintoki meiklej jfr C. elegans / WormBase
	Enrichment or depletion of a GO category within a class of genes: which test? [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 401-407. by Isabelle Rivals, Leon Personnaz, Lieng Taing, Marie-Claude Potier posted to bioinformatics ease mev nested-ease by capitall on 2008-01-31 19:59:58 as along with 12 people and 2 groups ipark-kaist phoenixzxl cisevol cmzmasek paszkows winterschlaefer guhjy ealloza grahamc zhouyu yas maralena BergmanLab BioinfoCIPF
	Using expression profiling data to identify human microRNA targets [My Copy] Nature Methods, Vol. 4, No. 12. (18 November 2007), pp. 1045-1049. by Jim C. Huang, Tomas Babak, Timothy W. Corson, et al.Gordon Chua, Sofia Khan, Brenda L. Gallie, Timothy R. Hughes, Benjamin J. Blencowe, Brendan J. Frey, Quaid D. Morris posted to mirna ovarian-cancer by capitall on 2008-01-18 18:14:01 as along with 14 people and 2 groups tonamswish daforerog megraw askrajiv gracio jfr tmmurali cjeans lp2 fpattyn Alexander_Kanitz guhjy heliopais giovenko BenosLab microRNA
	Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? [My Copy] Nature Reviews Genetics, Vol. 9, No. 2. (01 February 2008), pp. 102-114. by Witold Filipowicz, Suvendra N. Bhattacharyya, Nahum Sonenberg posted to mirna ovarian-cancer by capitall on 2008-01-18 18:11:20 as along with 16 people and 1 group danaiancu daforerog qfwills valeriehilgers inesdesantiago giovenko ealloza guhjy dchughes sebastien_vigneau bootsy heliopais emptyhb Alexander_Kanitz maralena rs microRNA
	Tissue Issues [My Copy] Nature, Vol. 448 (23 August 2007), pp. 959-962. by Nathan Blow posted to ovarian-cancer by capitall on 2008-01-18 18:09:01 as
	Accurate detection of aneuploidies in array CGH and gene expression microarray data. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3533-3543. by C. L. Myers, M. J. Dunham, S. Y. Kung, O. G. Troyanskaya posted to bioinformatics cgh mev microarray by capitall on 2007-12-12 21:05:47 as along with 2 people OscarRueda bioguru2000
	Independent Test Set Performance in the Prediction of Early Relapse in Ovarian Cancer with Gene Expression Profiles [My Copy] Clin Cancer Res, Vol. 11, No. 21. (1 November 2005), pp. 7958-7959. by Frank De Smet, Nathalie L. Pochet, Bart L. De Moor, et al.Toon Van Gorp, Dirk Timmerman, Ignace B. Vergote, Lynn C. Hartmann, Andrew I. Damokosh, Sebastian Hoersch posted to microarray ovarian-cancer platinum by capitall on 2007-11-13 03:11:10 as along with 1 person frohike
	TM4 microarray software suite. [My Copy] Methods Enzymol, Vol. 411 (2006), pp. 134-193. by A. I. Saeed, N. K. Bhagabati, J. C. Braisted, et al.W. Liang, V. Sharov, E. A. Howe, J. Li, M. Thiagarajan, J. A. White, J. Quackenbush posted to bioinformatics compbio mev microarray mine software tm4 by capitall on 2007-11-13 02:44:09 as
	Identifying biological themes within lists of genes with EASE. [My Copy] Genome biology, Vol. 4, No. 10. (2003) by D. A. Hosack, G. Dennis, B. T. Sherman, H. C. Lane, R. A. Lempicki posted to bioinformatics chapter ease mev microarray by capitall on 2007-11-10 22:16:39 as along with 3 people and 2 groups VGreiff irenas jeremymiller dbk-lab GeschwindLab

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capitall's library 54 articles Export

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