carlescorbi's library 42 articles Export

	Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain. [My Copy] PLoS Comput Biol, Vol. 2, No. 1. (January 2006) by T. Hou, K. Chen, W. A. McLaughlin, B. Lu, W. Wang posted to no-tag by carlescorbi on 2008-04-04 17:43:42 as along with 4 people neils Evangelia biehl jteyra
	The role of backbone motions in ligand binding to the c-Src SH3 domain [My Copy] Journal of Molecular Biology, Vol. 313, No. 4. (2 November 2001), pp. 873-887. by Chunyu Wang, Norma H. Pawley, Linda K. Nicholson posted to dynamics molecular project1 by carlescorbi on 2008-03-28 11:53:08 as
	Bayesian Model Based Clustering Analysis: Application to a Molecular Dynamics Trajectory of the HIV-1 Integrase Catalytic Core [My Copy] J. Chem. Inf. Model., Vol. 46, No. 4. (24 July 2006), pp. 1742-1750. by Y. Li posted to analisis dynamics md by carlescorbi on 2008-01-28 12:34:08 as
	Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations. [My Copy] J Mol Biol, Vol. 320, No. 2. (5 July 2002), pp. 369-387. by R. Guerois, J. E. Nielsen, L. Serrano posted to project1 by carlescorbi on 2008-01-23 21:03:35 as along with 4 people apaydin aalibes chad_davis hmk
	The Structure of the Alzheimer Amyloid [beta] 10-35 Peptide Probed through Replica-Exchange Molecular Dynamics Simulations in Explicit Solvent [My Copy] Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 275-285. by Andrij Baumketner, Joan-Emma Shea posted to replica-exchange simulations by carlescorbi on 2008-01-21 18:24:06 as along with 1 person cactus
	Dynamic Coupling between the SH2 and SH3 Domains of c-Src and Hck Underlies Their Inactivation by C-Terminal Tyrosine Phosphorylation [My Copy] Cell, Vol. 105, No. 1. (06 April 2001), pp. 115-126. by Matthew A. Young, Stefania Gonfloni, Giulio Superti-Furga, Benoit Roux, John Kuriyan posted to no-tag by carlescorbi on 2007-12-12 09:12:50 as along with 2 people saravan choonpeng
	The application of thermodynamic methods in drug design [My Copy] Thermochimica Acta, Vol. 380, No. 2. (14 December 2001), pp. 217-227. by Adrian Velazquez-Campoy, Irene Luque, Ernesto Freire posted to project1 by carlescorbi on 2007-12-11 10:17:20 as
	Structural parameterization of the binding enthalpy of small ligands. [My Copy] Proteins, Vol. 49, No. 2. (1 November 2002), pp. 181-190. by I. Luque, E. Freire posted to project1 by carlescorbi on 2007-12-11 10:17:14 as along with 2 people apaydin lillekatt
	Structure-based prediction of binding affinities and molecular design of peptide ligands. [My Copy] Methods Enzymol, Vol. 295 (1998), pp. 100-127. by I. Luque, E. Freire posted to project1 by carlescorbi on 2007-12-11 10:17:09 as
	Three-dimensional holographic vector of atomic interaction field for quantitative structure- activity relationship of Aza-bioisosteres of anthrapyrazoles (Aza-APs) [My Copy] Journal of Molecular Graphics and Modelling, Vol. In Press, Accepted Manuscript by Xu Luo-Nan, Li Zhi-Liang, Zhou Peng posted to project1 by carlescorbi on 2007-12-04 12:29:23 as
	Large scale analysis of protein-binding cavities using self-organizing maps and wavelet-based surface patches to describe functional properties, selectivity discrimination, and putative cross-reactivity. [My Copy] Proteins, Vol. 71, No. 3. (15 May 2008), pp. 1288-1306. by Katrin Kupas, Alfred Ultsch, Gerhard Klebe posted to project1 by carlescorbi on 2007-11-28 16:03:11 as along with 4 people and 1 group rschulz nickolay sobolevnrm higueruelo baker-group
	Moment invariants as shape recognition technique for comparing protein binding sites [My Copy] Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3139-3146. by Ingolf Sommer, Oliver Muller, Francisco S. Domingues, Oliver Sander, Joachim Weickert, Thomas Lengauer posted to project1 by carlescorbi on 2007-11-28 15:56:10 as along with 1 person tjimenez
	A simple method for displaying the hydropathic character of a protein [My Copy] Journal of Molecular Biology, Vol. 157, No. 1. (05 May 1982), pp. 105-132. by J. Kyte, R. Doolittle posted to hydrophobicity project1 by carlescorbi on 2007-10-31 12:23:59 as along with 6 people jwm pjkiley nedwards BioNica twenta rph
	Comparative modeling without implicit sequence alignments [My Copy] Bioinformatics (27 July 2007), btm380. by Andrzej Kolinski, Dominik Gront posted to project1 by carlescorbi on 2007-10-31 12:21:14 as along with 2 people rabio sekmi
	Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. [My Copy] Nucleic Acids Res, Vol. 31, No. 24. (15 December 2003), pp. 7189-7198. by S. Jones, H. P. Shanahan, H. M. Berman, J. M. Thornton posted to project1 by carlescorbi on 2007-10-21 18:13:05 as along with 2 people kaarsinogen medic0747
	A method for simultaneous alignment of multiple protein structures. [My Copy] Proteins, Vol. 56, No. 1. (1 July 2004), pp. 143-156. by M. Shatsky, R. Nussinov, H. J. Wolfson posted to project1 protein structures by carlescorbi on 2007-10-21 17:48:14 as along with 5 people tomjad nachtalp analogAI j3xucite kgutwin
	Three-dimensional profiles: a new tool to identify protein surface similarities [My Copy] Journal of Molecular Biology, Vol. 284, No. 4. (11 December 1998), pp. 1211-1221. by Manuel de Rinaldis, Gabriele Ausiello, Gianni Cesareni, Manuela Helmer-Citterich posted to 3d comparation project1 surface by carlescorbi on 2007-10-20 11:58:26 as along with 2 people nickolay Evangelia
	Protein-ligand docking: Current status and future challenges. [My Copy] Proteins (21 July 2006) by Sérgio Filipe F. Sousa, Pedro Alexandrino A. Fernandes, Maria João J. Ramos posted to docking review by carlescorbi on 2007-10-17 17:30:05 as along with 10 people and 2 groups flbarroso ramensky BragilMassoud yongzhao peprovy kazemi sergio_fms robert boris_aguilar qaiser_fatmi TSRI_MGL Chang group
	Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions [My Copy] Protein Sci, Vol. 14, No. 2. (1 February 2005), pp. 316-328. by Yuhua Duan, Boojala V. Reddy, Yiannis N. Kaznessis posted to 3d binding docking project1 by carlescorbi on 2007-10-16 17:50:59 as along with 3 people mkotlyar bicko ameetsoni
	Comparing protein-ligand docking programs is difficult. [My Copy] Proteins (3 June 2005) by Jason C C. Cole, Christopher W W. Murray, J Willem M W. Nissink, Richard D D. Taylor, Robin Taylor posted to docking project1 by carlescorbi on 2007-10-16 11:18:23 as along with 8 people and 3 groups flbarroso BragilMassoud dgruiz thaliana yongzhao sangeetha kzfm peprovy Bioinformatics TSRI_MGL insilicodrug
	A semiempirical free energy force field with charge-based desolvation [My Copy] Journal of Computational Chemistry, Vol. 28, No. 6. (1 February 2007), pp. 1145-1152. by Ruth Huey, Garrett M. Morris, Arthur J. Olson, David S. Goodsell posted to docking project1 by carlescorbi on 2007-10-16 09:33:44 as along with 6 people and 1 group trishul nickolay joule oteri IrinaMoreira BragilMassoud Structural Biology Group TorVergata
	Docking and scoring protein complexes: CAPRI 3rd Edition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Marc F. Lensink, Raúl Méndez, Shoshana J. Wodak posted to no-tag by carlescorbi on 2007-10-13 21:07:11 as along with 9 people and 1 group mgomes flbarroso csrocha bicko ruvido cjeans yalexeev middledomain timg structural_bioinformatics
	Essential dynamics of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 17, No. 4. (December 1993), pp. 412-425. by Andrea Amadei, Antonius B. M. Linssen, Herman J. C. Berendsen posted to corex docking dynamics molecular by carlescorbi on 2007-10-09 19:26:54 as along with 10 people and 1 group kazemi Diego_Prada baaden aqeel yongzhao ttjoseph ffranca allmensch dimka nigham TSRI_MGL
	Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function [My Copy] Journal of Computational Chemistry, Vol. 19, No. 14. (6 January 1998), pp. 1639-1662. by Garrett M. Morris, David S. Goodsell, Robert S. Halliday, et al.Ruth Huey, William E. Hart, Richard K. Belew, Arthur J. Olson posted to no-tag by carlescorbi on 2007-10-08 20:58:32 as along with 23 people and 2 groups trishul nickolay npt11tpn jamalex joule lna Lombardo_7 karinaecomp oteri A_Coletta_Thesis arlam dgruiz nachtalp P2324548 yongzhao peprovy tovrstra papatonyhill schlauchi middledomain LamBras andreramme UVA_mag_res Chang group TSRI_MGL
	Sequence, Structure and Energetic Determinants of Phosphopeptide Selectivity of SH2 Domains [My Copy] Journal of Molecular Biology, Vol. 334, No. 4. (5 December 2003), pp. 823-841. by Felix B. Sheinerman, Bissan Al-Lazikani, Barry Honig posted to electrostatic by carlescorbi on 2007-10-04 11:44:04 as along with 1 person Evangelia
	Electrostatic aspects of protein–protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 10, No. 2. (1 April 2000), pp. 153-159. by F. Sheinerman posted to electrostatic interactions protein-protein by carlescorbi on 2007-10-04 11:42:20 as along with 4 people flbarroso charris5 cjeans mikaellund
	On the Role of Electrostatic Interactions in the Design of Protein–Protein Interfaces [My Copy] Journal of Molecular Biology, Vol. 318, No. 1. (19 April 2002), pp. 161-177. by F. Sheinerman posted to design electrostatic interfaces protein-protein by carlescorbi on 2007-10-04 11:41:11 as along with 3 people flbarroso boris_aguilar higueruelo
	Molecular dynamics simulation study for LRH-1: Interaction with fragments of SHP and function of phospholipid ligand [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Tao Zhang, Jun-Hong Zhou, Liang-Wei Shi, Rui-Xin Zhu, Min-Bo Chen posted to dynamics molecular simulation by carlescorbi on 2007-10-02 18:07:14 as
	Automated prediction of ligand-binding sites in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Rodney Harris, Arthur J. Olson, David S. Goodsell posted to ligand-binding prediction by carlescorbi on 2007-10-02 17:24:41 as along with 4 people iaolier oteri tjimenez RamuAnandakrishnan
	Rational design of affinity peptide ligand by flexible docking simulation [My Copy] Journal of Chromatography A, Vol. 1146, No. 1. (30 March 2007), pp. 41-50. by Fu-Feng Liu, Tao Wang, Xiao-Yan Dong, Yan Sun posted to binding bioinformatics docking flexible by carlescorbi on 2007-09-21 13:22:46 as along with 1 person and 1 group oteri Structural Biology Group TorVergata
	Phage display for engineering and analyzing protein interaction interfaces [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Sachdev S. Sidhu, Shohei Koide posted to display phage by carlescorbi on 2007-09-20 17:01:23 as along with 2 people GeeSharpMinor higueruelo
	Predicting the equilibrium protein folding pathway: structure-based analysis of staphylococcal nuclease. [My Copy] Proteins, Vol. 27, No. 2. (February 1997), pp. 171-183. by V. J. Hilser, E. Freire posted to corex by carlescorbi on 2007-09-20 16:15:43 as
	Structure-based Calculation of the Equilibrium Folding Pathway of Proteins. Correlation with Hydrogen Exchange Protection Factors [My Copy] Journal of Molecular Biology, Vol. 262, No. 5. (11 October 1996), pp. 756-772. by V. Hilser posted to corex by carlescorbi on 2007-09-20 16:10:48 as along with 1 person fl
	HMMoC a compiler for hidden Markov models [My Copy] Bioinformatics, Vol. 23, No. 18. (15 September 2007), pp. 2485-2487. by Gerton Lunter posted to bioinformatics by carlescorbi on 2007-09-18 08:58:21 as along with 10 people aprasad druvus treangen alexeid guhjy operon AaronDarling rdiaz niallhaslam Alfie
	SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family [My Copy] Journal of Molecular Biology, Vol. 298, No. 2. (28 April 2000), pp. 313-328. by Barbara Brannetti, Allegra Via, Gianluca Cestra, Gianni Cesareni, Manuela H. Citterich posted to binding domains probability protein protein-protein recognition by carlescorbi on 2007-09-13 11:36:46 as along with 2 people Evangelia biehl
	Automatic generation of 3D motifs for classification of protein binding sites [My Copy] BMC Bioinformatics, Vol. 8 (30 August 2007), 321. by Jean-Christophe Nebel, Pawel Herzyk, David R. Gilbert posted to 3d binding classification motifs protein sites by carlescorbi on 2007-09-11 20:02:07 as along with 4 people iaolier shadowman Evangelia Minty
	The structure and function of proline-rich regions in proteins. [My Copy] Biochem J, Vol. 297 ( Pt 2) (15 January 1994), pp. 249-260. by M. P. Williamson posted to ppii structure by carlescorbi on 2007-09-11 18:52:14 as
	Recognition of Proline-Rich Motifs by Protein-Protein-Interaction Domains [My Copy] Angewandte Chemie International Edition, Vol. 44, No. 19. (2005), pp. 2852-2869. by Linda J. Ball, Ronald Kühne, Jens Schneider-Mergener, Hartmut Oschkinat posted to domains motifs proline-rich protein-protein recognition requeriments structure by carlescorbi on 2007-09-11 17:53:40 as along with 2 people roys Evangelia
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to bioinformatics prediction protein-protein by carlescorbi on 2007-09-11 14:03:20 as along with 14 people dfdong jinghu_fandm flbarroso timg phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam marti higueruelo kintoki
	Statistical methods for analyzing biological sequences - US Patent 7016786 [My Copy] by Ranagthan posted to no-tag by carlescorbi on 2007-09-10 16:41:58 as
	Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5772-5777. by B. Ma, T. Elkayam, H. Wolfson, R. Nussinov posted to interactions project1 protein-protein by carlescorbi on 2007-09-10 13:40:12 as along with 10 people and 2 groups tbinbal dkoveal mdimmic barry bicko lyongu nickolay choonpeng cjeans ladab structural_bioinformatics Bioinformatics
	Evolutionarily conserved networks of residues mediate allosteric communication in proteins [My Copy] Nature Structural & Molecular Biology, Vol. 10, No. 1. (16 December 2002), pp. 59-69. by Gurol M. Suel, Steve W. Lockless, Mark A. Wall, Rama Ranganathan posted to allosteric communication large-scale mediate residues by carlescorbi on 2007-09-09 14:51:25 as along with 20 people and 3 groups mgomes qluo arjun_citeulike RebeccaHamer ynaito lna dimka marcius eckart_bindewald gbart analogAI nirfriedman dgront caporaso choonpeng efge mingzhi yalexeev weisblum ca3295 biomedical-nlp BioinfoCIPF SGU-CIPF

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domains	2
interactions	2
motifs	2
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hydrophobicity	1
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carlescorbi's library 42 articles Export

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