carlk's clustering [37 articles] Export

Recent papers added to carlk's library classified by the tag clustering. You can also see everyone's clustering.

	Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics [My Copy] PLoS Biol, Vol. 7, No. 10. (6 October 2009), e1000213. by Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte posted to network clustering by carlk on 2009-11-02 23:07:09 as along with 4 people tmmurali djkt lp2 ptrobajo
	Information-based clustering. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 51. (20 December 2005), pp. 18297-18302. by Noam Slonim, Gurinder, Gasper Tkacik, William Bialek posted to clustering by carlk on 2009-10-10 00:26:46 as along with 11 people and 1 group saket tmmurali kuhn textoris okarsligil bayesian balicea jdiggans dylan77 nklee quianominorleo Bioinformatics
	Growing functional modules from a seed protein via integration of protein interaction and gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (23 October 2007), 408. by Ioannis A. Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to networks moduledetection complexes complex clustering by carlk on 2009-10-10 00:26:05 as along with 3 people dragonrez jfr iris_2001
	Analysis of the structure of complex networks at different resolution levels [My Copy] (15 Jan 2008) by Alex Arenas, Alberto Fernandez, Sergio Gomez posted to networks modules moduledetection modularity clustering by carlk on 2009-10-09 22:16:05 as along with 4 people snow_dragon kubyaddi sato-ryu bruno
	How and when should interactome-derived clusters be used to predict functional modules and protein function? [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3143-3150. by Jimin Song, Mona Singh posted to network clustering_algorithms clustering by carlk on 2009-10-07 19:14:19 as along with 5 people and 1 group jperkins TRHvidsten grahamc jsuchit saket Orengo Group Journal Picks
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted to ppi networks interaction complexes complex clustering by carlk on 2009-10-07 19:11:24 as along with 4 people saket zwang guhjy chad_davis
	Network Analysis Tools: from biological networks to clusters and pathways [My Copy] Nature Protocols, Vol. 3, No. 10. (18 September 2008), pp. 1616-1629. by Sylvain Brohee, Karoline Faust, Gipsi Lima-Mendez, Gilles Vanderstocken, Jacques van Helden posted to review network clustering by carlk on 2009-10-03 00:43:57 as along with 9 people and 1 group mingzhi Stew daforerog pauldobson Zephyrus natstreet guhjy druvus dullhunk Bioinformatics - CRUK
	Structure discovery in PPI networks using pattern-based network decomposition [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1814-1821. by Philip Bachman, Ying Liu posted to networks modules moduledetection modularity model-based clustering by carlk on 2009-10-03 00:41:20 as along with 5 people colm ess30 apocapoc grahamc colmryan
	A method for finding communities of related genes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. Suppl 1. (6 April 2004), pp. 5241-5248. by Dennis M. Wilkinson, Bernardo A. Huberman posted to text_mining networks clustering by carlk on 2009-10-03 00:40:10 as along with 3 people shivaram pcahan1 iris_2001
	The modularity of pollination networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 50. (11 December 2007), pp. 19891-19896. by Jens M. Olesen, Jordi Bascompte, Yoko L. Dupont, Pedro Jordano posted to networks moduledetection modularity clustering by carlk on 2009-10-03 00:39:00 as along with 1 person kubyaddi
	Modulated modularity clustering as an exploratory tool for functional genomic inference. [My Copy] PLoS genetics, Vol. 5, No. 5. (8 May 2009), e1000479. by Eric A. Stone, Julien F. Ayroles posted to networks modularity clustering by carlk on 2009-10-03 00:38:02 as along with 4 people and 1 group rdiaz theodorejmorgan roys tmmurali Morgan Lab-KSU
	NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by S. Brohée, K. Faust, G. Lima-Mendez, et al.O. Sand, R. Janky, G. Vanderstocken, Y. Deville, J. van Helden posted to clustering databases moduledetection networks by carlk on 2009-07-20 23:19:48 as along with 7 people ptrobajo natstreet druvus jfr bootsy Borelli guhjy
	Clustering by common friends finds locally significant proteins mediating modules [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1124-1131. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michalis Faloutsos, Michael Schroeder posted to clustering moduledetection networks by carlk on 2009-07-20 23:19:09 as along with 2 people saket zwang
	Model-Based Clustering for Image Segmentation and Large Datasets via Sampling [My Copy] Journal of Classification, Vol. 21, No. 2. (1 September 2004), pp. 231-253. by Ron Wehrens, Lutgarde M. C. Buydens, Chris Fraley, Adrian E. Raftery posted to clustering model-based by carlk on 2009-07-19 02:11:41 as
	Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (09 September 2008), 365. by E. Andres Houseman, Brock Christensen, Ru F. Yeh, et al.Carmen Marsit, Margaret Karagas, Margaret Wrensch, Heather Nelson, Joseph Wiemels, Shichun Zheng, John Wiencke, Karl Kelsey posted to clustering model-based by carlk on 2009-07-19 02:11:20 as along with 1 person dolchan
	Inference of structure in subdivided populations at low levels of genetic differentiation--the correlated allele frequencies model revisited. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2222-2228. by G. Guillot posted to clustering genomics population by carlk on 2009-06-22 21:35:09 as along with 2 people druvus renewang
	Clines, Clusters, and the Effect of Study Design on the Inference of Human Population Structure. [My Copy] PLoS Genet, Vol. 1, No. 6. (9 December 2005) by Noah A A. Rosenberg, Saurabh Mahajan, Sohini Ramachandran, Chengfeng Zhao, Jonathan K K. Pritchard, Marcus W W. Feldman posted to clustering genomics population by carlk on 2009-06-22 21:34:38 as along with 4 people ccots larios ryanraaum pcarbo
	Human population structure detection via multilocus genotype clustering [My Copy] BMC Genetics, Vol. 8 (25 June 2007), 34. by Xiaoyi Gao, Joshua Starmer posted to clustering genomics population by carlk on 2009-06-22 21:33:36 as along with 1 person ryanraaum
	Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data. [My Copy] BMC bioinformatics, Vol. 7 (2006) by T. A. Thornton-Wells, J. H. Moore, J. L. Haines posted to clustering genomics by carlk on 2009-06-22 21:32:41 as along with 1 person daforerog
	Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations [My Copy] BMC Bioinformatics, Vol. 9 (16 December 2008), 539. by Jukka, Jing Tang posted to clustering genomics population by carlk on 2009-06-22 21:32:14 as along with 1 person jmeppley
	CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1801-1806. by Mattias Jakobsson, Noah A. Rosenberg posted to alignment clustering by carlk on 2009-06-22 21:29:10 as along with 3 people saket scryrps ryanraaum
	Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies [My Copy] Genetics In Genetics, Vol. 164, No. 4. (1 August 2003), pp. 1567-1587. by Daniel Falush, Matthew Stephens, Jonathan K. Pritchard posted to clustering genomics population by carlk on 2009-06-22 21:28:48 as along with 9 people engelhardt Latimeria druvus cchurc1 sriram_s hms Xavier dmc pcarbo
	Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study [My Copy] Molecular Ecology Notes, Vol. 7, No. 5. (September 2007), pp. 747-756. by Chibiao Chen, Eric Durand, Florence Forbes, Olivier Francois posted to clustering genomics geography spatial by carlk on 2009-06-22 21:28:32 as
	Genetic Structure of Human Populations [My Copy] Science, Vol. 298, No. 5602. (20 December 2002), pp. 2381-2385. by Noah A. Rosenberg, Jonathan K. Pritchard, James L. Weber, et al.Howard M. Cann, Kenneth K. Kidd, Lev A. Zhivotovsky, Marcus W. Feldman posted to clustering genomics by carlk on 2009-06-22 21:28:03 as along with 5 people engelhardt daforerog ilyashl kentsis vplagnol
	distruct: a program for the graphical display of population structure [My Copy] Molecular Ecology Notes, Vol. 4, No. 1. (2004), pp. 137-138. by Noah A. Rosenberg posted to clustering visualization by carlk on 2009-06-22 21:27:23 as along with 2 people druvus pcarbo
	A comprehensive multi-local-world model for complex networks [My Copy] Physics Letters A, Vol. 373, No. 18-19. (20 April 2009), pp. 1601-1605. by Zhengping Fan, Guanrong Chen, Yunong Zhang posted to clustering networks random_graphs by carlk on 2009-06-10 20:34:39 as
	Model-Based Hierarchical Clustering [My Copy] In In Proc. 16th Conf. Uncertainty in Artificial Intelligence (2000), pp. 599-608. by Shivakumar Vaithyanathan, Byron Dom posted to algorithms clustering by carlk on 2009-06-10 20:32:28 as
	Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications [My Copy] Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2163-2173. by Haiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein posted to clustering by carlk on 2009-03-10 21:02:28 as along with 4 people mgomes sgoetz grahamc shigepong
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to clustering mcl by carlk on 2009-02-24 16:40:18 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen cgaugain johanviklund chad_davis camster operon knaseanka indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	Subgraph connectivity numbers of a graph [My Copy] Theory and Applications of Graphs (1978), pp. 371-383. by David Matula posted to clustering networks by carlk on 2009-01-29 19:30:00 as
	Ramsey theory for graph connectivity [My Copy] Journal of Graph Theory, Vol. 7, No. 1. (1983), pp. 95-103. by David W. Matula posted to clustering by carlk on 2009-01-29 19:29:36 as along with 1 person wiedenhoeft
	Cluster Analysis, Graph-Theoretic [My Copy] In Encyclopedia of Statistical Sciences by David W. Matula posted to clustering by carlk on 2009-01-29 19:28:46 as
	An Analysis of Some Graph Theoretical Cluster Techniques [My Copy] J. ACM, Vol. 17, No. 4. (1970), pp. 571-588. by Gary J. Augustson, Jack Minker posted to algorithms clustering networks by carlk on 2009-01-29 19:24:13 as
	HISSCLU: a hierarchical density-based method for semi-supervised clustering [My Copy] In EDBT '08: Proceedings of the 11th international conference on Extending database technology (2008), pp. 440-451. by Christian Böhm, Claudia Plant posted to clustering by carlk on 2008-10-24 17:04:49 as along with 1 person saket
	Hierarchical tree snipping: clustering guided by prior knowledge [My Copy] Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3335-3342. by Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif posted to clustering by carlk on 2008-10-19 22:04:49 as along with 2 people and 1 group nklee sobolevnrm baker-group
	Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Meng Tan, Erin Smith, James Broach, Christodoulos Floudas posted to clustering expression by carlk on 2008-10-19 21:55:09 as along with 5 people cswinburne jfr GeeSharpMinor chrisamiller guhjy
	Co-clustering of biological networks and gene expression data [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S145-154. by Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer posted to bicriteria clustering expression moduledetection modules networks by carlk on 2008-06-20 17:20:17 as along with 5 people meanerelk poirel saket chad_davis srp33

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networks	301
structure	71
protein	67
functionprediction	57
scp	51
algorithms	48
modules	46
databases	38
clustering	37
moduledetection	35
linkprediction	29
review	29
go	28
yeast	28
network	26
dynamics	20
complex	20
integration	18
alignment	17
complexes	17
tmpcite1	16
brain	16
disease	16
domains	14
ssl	13
evolution	13
ppi	12
steiner	12
diseaseppi	11
flu	11
expression	11
noise	10
comparison	10
signaling	10
motifs	9
regulation	9
genomics	8
experimental	7
modularity	7
rgrg	7
regulatory	7
doe	7
reassortment	6
metabolic	6
design	6
transcription	6
human	6
energy	6
fly	6
phylogeny	5
bicliques	5
search	5
population	5
visualization	5
theory	5
diseases	4
worm	4
pathways	4
interactions	4
metagenomics	4
interspecies	4
reviews	4
connectivity	3
influenza	3
model-based	3
machinelearning	3
bicriteria	3
decisiontrees	3
bacteria	3
1918	3
docking	3
hubs	3
assembly	3
graphtheory	3
pathogen	3
standard	2
kernels	2
ontology	2
crossspecies	2
local	2
community	2
simulated_data	2
interaction	2
historical	2
genetic	2
imaging	2
disorder	2
bad	2
scores	2
celegans	2
graph_theory	2
timemachine	2
protein_protein_interactions	2
overlapping	2
distance	2
graphs	1
geography	1
emap	1
termination	1
statistics	1
reliability_estmations	1
optimization	1
wiki	1
dense	1
tandem_affinity_purification	1
neighborhoods	1
tap	1
text_mining	1
domain	1
edgeweights	1
mouse	1
orthologs	1
yeast2hybrid	1
linkprediciton	1
homology	1
spatial	1
massspec	1
mcl	1
localized	1
virus	1
sequence	1
file-import-09-01-29	1
phylogenetics	1
foodweb	1
geometry	1
gas_vessicle	1
duplications	1
ranking	1
random_graphs	1
paleodiktyology	1
alzheimer	1
sat	1
macromolecular	1
detection	1
database	1
function	1
intereaction	1
clustering_algorithms	1
integrated_network	1
multicell	1
lattice	1

carlk's clustering [37 articles] Export

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