carlk's complex [20 articles] Export

Recent papers added to carlk's library classified by the tag complex. You can also see everyone's complex.

	A Complex-based Reconstruction of the Saccharomyces cerevisiae Interactome [My Copy] Mol Cell Proteomics, Vol. 8, No. 6. (1 June 2009), pp. 1361-1381. by Haidong Wang, Boyko Kakaradov, Sean R. Collins, et al.Lena Karotki, Dorothea Fiedler, Michael Shales, Kevan M. Shokat, Tobias C. Walther, Nevan J. Krogan, Daphne Koller posted to yeast networks complexes complex by carlk on 2009-10-24 00:04:00 as along with 2 people ptrobajo anf
	Growing functional modules from a seed protein via integration of protein interaction and gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (23 October 2007), 408. by Ioannis A. Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to networks moduledetection complexes complex clustering by carlk on 2009-10-10 00:26:05 as along with 3 people dragonrez jfr iris_2001
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted to ppi networks interaction complexes complex clustering by carlk on 2009-10-07 19:11:24 as along with 4 people saket zwang guhjy chad_davis
	A complex-centric view of protein network evolution. [My Copy] Nucleic acids research, Vol. 37, No. 12. (1 July 2009), e88. by Nir Yosef, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to protein ppi networks complexes complex by carlk on 2009-10-07 19:08:57 as along with 11 people and 1 group chica saket dakelley tomhebbron davidalee leemond31 druvus kiekyon neils tmmurali grahamc Orengo Group Journal Picks
	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 6. (g 2005), pp. 835-846. by Roded Sharan, Trey Ideker, Brian Kelley, Ron Shamir, Richard M. Karp posted to yeast network complexes complex comparison alignment by carlk on 2009-09-10 18:23:17 as along with 3 people and 1 group chica okarsligil nuke2005 Bioinformatics
	Ultra-Fast Evaluation of Protein Energies Directly from Sequence [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006), e63. by Gevorg Grigoryan, Fei Zhou, Steve R. Lustig, Gerbrand Ceder, Dane Morgan, Amy E. Keating posted to complex complexes energy structure by carlk on 2009-04-27 22:42:07 as along with 3 people kevinchannon wouterboomsma chgjb
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to complex complexes macromolecular review structure by carlk on 2009-04-17 15:28:06 as along with 10 people dgront bmduggan choonpeng mijam kgutwin phoenixzxl krapnik flbarroso saunders gisle
	CORUM: the comprehensive resource of mammalian protein complexes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D646-650. by Andreas Ruepp, Barbara Brauner, Irmtraud Dunger-Kaltenbach, et al.Goar Frishman, Corinna Montrone, Michael Stransky, Brigitte Waegele, Thorsten Schmidt, Octave Noubibou N. Doudieu, Volker Stümpflen, H. Werner Mewes posted to complex complexes databases by carlk on 2009-04-12 04:09:08 as along with 6 people dragonrez poirel tmmurali chad_davis guhjy shung
	Protein complex identification by supervised graph local clustering [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i250-268. by Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph posted to community complex networks by carlk on 2009-01-22 23:55:36 as along with 3 people adking80 saket neils
	Predicting co-complexed protein pairs from heterogeneous data. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by J. Qiu, W. S. Noble posted to complex complexes integration networks steiner by carlk on 2008-06-30 14:50:19 as along with 5 people guhjy roys bootsy mingzhi penpen926
	A "seed-refine" algorithm for detecting protein complexes from protein interaction data. [My Copy] IEEE transactions on nanobioscience, Vol. 6, No. 1. (March 2007), pp. 43-50. by P. Pei, A. Zhang posted to complex complexes networks steiner by carlk on 2008-06-17 03:46:53 as
	Discovering protein complexes in dense reliable neighborhoods of protein interaction networks. [My Copy] Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 157-168. by Xiao-Li L. Li, Chuan-Sheng S. Foo, See-Kiong K. Ng posted to complex complexes networks steiner by carlk on 2008-06-17 03:45:11 as
	Reconstructing the Topology of Protein Complexes [My Copy] Research in Computational Molecular Biology (2007), pp. 32-46. by Allister Bernard, David Vaughn, Alexander Hartemink posted to algorithms complex networks by carlk on 2008-05-23 18:26:47 as
	Predicting interactions in protein networks by completing defective cliques. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 7. (1 April 2006), pp. 823-829. by Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein posted to complex linkprediction networks by carlk on 2008-05-23 18:20:03 as along with 4 people and 2 groups paccanarolab jiny Borelli lfriedl Paccanaro Lab kdl
	Transcriptional regulation of protein complexes within and across species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 4. (23 January 2007), pp. 1283-1288. by K. Tan, T. Shlomi, H. Feizi, T. Ideker, R. Sharan posted to complex networks regulation transcription by carlk on 2008-05-23 18:11:21 as along with 6 people and 2 groups HawkinsJohnC kaarsinogen icases nickluscombe zwang dylan77 EBI-regulation TNT
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, Josã© M. Peregrãn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, James C. Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to complex networks yeast by carlk on 2008-05-23 18:01:37 as along with 30 people and 5 groups aceol mpotamias paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike hplatero chasmand mapplab ethkim Paccanaro Lab kdl EBI-regulation BioinfoCIPF SGU-CIPF
	Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis. [My Copy] Nature, Vol. 436, No. 7052. (11 August 2005), pp. 861-865. by Kristin C. Gunsalus, Hui Ge, Aaron J. Schetter, et al.Debra S. Goldberg, Jing-Dong D. Han, Tong Hao, Gabriel F. Berriz, Nicolas Bertin, Jerry Huang, Ling-Shiang S. Chuang, Ning Li, Ramamurthy Mani, Anthony A. Hyman, Birte Sönnichsen, Christophe J. Echeverri, Frederick P. Roth, Marc Vidal, Fabio Piano posted to celegans complex dynamics networks by carlk on 2008-05-23 17:46:15 as along with 11 people and 1 group bpcusack Dangerfc thegoose2 tharris nirfriedman koller patrycja_missiuro mingzhi jiny Doug ksiek C. elegans / WormBase
	Dynamic complex formation during the yeast cell cycle. [My Copy] Science (New York, N.Y.), Vol. 307, No. 5710. (4 February 2005), pp. 724-727. by U. de Lichtenberg, L. J. Jensen, S. Brunak, P. Bork posted to complex dynamics networks yeast by carlk on 2008-05-23 17:41:44 as along with 12 people and 1 group chica mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne phoenixzxl larsjuhljensen gjuggler dIEMoSIRIS
	Predicting co-complexed protein pairs using genomic and proteomic data integration. [My Copy] BMC Bioinformatics, Vol. 5 (16 April 2004) by L. V. Zhang, S. L. Wong, O. D. King, F. P. Roth posted to complex integration linkprediction networks protein by carlk on 2008-05-20 20:12:40 as along with 3 people and 1 group lfriedl reidy nedwards kdl
	Predicting protein complex membership using probabilistic network reliability. [My Copy] Genome Res, Vol. 14, No. 6. (June 2004), pp. 1170-1175. by S. Asthana, O. D. King, F. D. Gibbons, F. P. Roth posted to complex linkprediction networks noise by carlk on 2008-05-20 20:12:00 as along with 1 person iris_2001

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networks	301
structure	71
protein	67
functionprediction	57
scp	51
algorithms	48
modules	46
databases	38
clustering	37
moduledetection	35
linkprediction	29
review	29
go	28
yeast	28
network	26
dynamics	20
complex	20
integration	18
alignment	17
complexes	17
tmpcite1	16
brain	16
disease	16
domains	14
ssl	13
evolution	13
ppi	12
steiner	12
diseaseppi	11
flu	11
expression	11
noise	10
comparison	10
signaling	10
motifs	9
regulation	9
genomics	8
experimental	7
modularity	7
rgrg	7
regulatory	7
doe	7
reassortment	6
metabolic	6
design	6
transcription	6
human	6
energy	6
fly	6
phylogeny	5
bicliques	5
search	5
population	5
visualization	5
theory	5
diseases	4
worm	4
pathways	4
interactions	4
metagenomics	4
interspecies	4
reviews	4
connectivity	3
influenza	3
model-based	3
machinelearning	3
bicriteria	3
decisiontrees	3
bacteria	3
1918	3
docking	3
hubs	3
assembly	3
graphtheory	3
pathogen	3
standard	2
kernels	2
ontology	2
crossspecies	2
local	2
community	2
simulated_data	2
interaction	2
historical	2
genetic	2
imaging	2
disorder	2
bad	2
scores	2
celegans	2
graph_theory	2
timemachine	2
protein_protein_interactions	2
overlapping	2
distance	2
graphs	1
geography	1
emap	1
termination	1
statistics	1
reliability_estmations	1
optimization	1
wiki	1
dense	1
tandem_affinity_purification	1
neighborhoods	1
tap	1
text_mining	1
domain	1
edgeweights	1
mouse	1
orthologs	1
yeast2hybrid	1
linkprediciton	1
homology	1
spatial	1
massspec	1
mcl	1
localized	1
virus	1
sequence	1
file-import-09-01-29	1
phylogenetics	1
foodweb	1
geometry	1
gas_vessicle	1
duplications	1
ranking	1
random_graphs	1
paleodiktyology	1
alzheimer	1
sat	1
macromolecular	1
detection	1
database	1
function	1
intereaction	1
clustering_algorithms	1
integrated_network	1
multicell	1
lattice	1

carlk's complex [20 articles] Export

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