carlk's linkprediction [29 articles] Export

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	STRING 8--a global view on proteins and their functional interactions in 630 organisms. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D412-416. by Lars J. Jensen, Michael Kuhn, Manuel Stark, et al.Samuel Chaffron, Chris Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering posted to networks network linkprediction doe database by carlk on 2009-10-24 00:06:28 as along with 16 people and 1 group dfdong mitko ilyashl hagechouchin443 lptolik kshameer allysonlister chad_davis larsjuhljensen druvus guhjy renatomilani grahamc behindtherabbit kgutwin biehl Bioinformatics
	Uncovering the rules for protein-protein interactions from yeast genomic data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 10. (10 March 2009), pp. 3752-3757. by Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang posted to yeast networks network linkprediction by carlk on 2009-10-24 00:05:32 as along with 8 people and 1 group guhjy AbnerCYH sobolevnrm mariap3636 mstumpf grahamc zwang phoenixzxl baker-group
	PRINCESS, a Protein Interaction Confidence Evaluation System with Multiple Data Sources [My Copy] Mol Cell Proteomics, Vol. 7, No. 6. (1 June 2008), pp. 1043-1052. by Dong Li, Wanlin Liu, Zhongyang Liu, et al.Jian Wang, Qijun Liu, Yunping Zhu, Fuchu He posted to network linkprediction doe by carlk on 2009-10-24 00:01:00 as along with 4 people anf guhjy kluck phoenixzxl
	An assessment of the uses of homologous interactions [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 689-695. by Ramazan Saeed, Charlotte Deane posted to networks linkprediction homology by carlk on 2009-10-24 00:00:25 as along with 11 people snow_dragon lawraga winterschlaefer chad_davis grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
	AtPID: Arabidopsis thaliana protein interactome database an integrative platform for plant systems biology [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D999-1008. by Jian Cui, Peng Li, Guang Li, et al.Feng Xu, Chen Zhao, Yuhua Li, Zhongnan Yang, Guang Wang, Qingbo Yu, Yixue Li, Tieliu Shi posted to networks network linkprediction doe databases by carlk on 2009-10-23 23:59:56 as along with 1 person cjeans
	Current progress in network research: toward reference networks for key model organisms [My Copy] Brief Bioinform, Vol. 8, No. 5. (1 September 2007), pp. 318-332. by Balaji S. Srinivasan, Nigam H. Shah, Jason A. Flannick, Eduardo Abeliuk, Antal F. Novak, Serafim Batzoglou posted to reviews review linkprediction doe by carlk on 2009-10-23 23:59:06 as along with 10 people and 1 group abhishek_tiwari akshayk ptrobajo pengchy guhjy grahamc nedwards roys daed marck Bioinformatics
	Computational Identification of Potential Molecular Interactions in Arabidopsis [My Copy] Plant Physiol., Vol. 151, No. 1. (1 September 2009), pp. 34-46. by Mingzhi Lin, Bin Hu, Lijuan Chen, et al.Peng Sun, Yi Fan, Ping Wu, Xin Chen posted to networks linkprediction doe by carlk on 2009-10-23 23:58:14 as
	Hierarchical structure and the prediction of missing links in networks [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 98-101. by Aaron Clauset, Cristopher Moore, M. E. J. Newman posted to networks linkprediction by carlk on 2009-10-07 19:08:28 as along with 46 people ipark-kaist gtgt15 saket wei_tang Kovanen diamantis cfelipesp orahcio rcrane kubyaddi pbull Ema jago cmor balicea kengg jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis guhjy craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
	Sequence patches on MAPK surfaces define protein-protein interactions. [My Copy] Genome biology, Vol. 10, No. 6. (5 June 2009) by Gary L. Johnson, Shawn M. Gomez posted to protein_protein_interactions protein network linkprediction intereaction by carlk on 2009-10-03 00:42:03 as along with 1 person higueruelo
	Learning signaling network structures with sparsely distributed data. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 201-212. by K. Sachs, S. Itani, J. Carlisle, G. P. Nolan, D. Pe'er, D. A. Lauffenburger posted to linkprediction networks rgrg signaling by carlk on 2009-03-30 20:44:23 as along with 3 people mstumpf frohike brianb
	Conserved patterns of protein interaction in multiple species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979. by Roded Sharan, Silpa Suthram, Ryan M. Kelley, et al.Tanja Kuhn, Scott McCuine, Peter Uetz, Taylor Sittler, Richard M. Karp, Trey Ideker posted to network linkprediction alignment by carlk on 2009-03-03 20:39:57 as along with 18 people and 2 groups chica kiekyon thegoose2 robfsouza tharris jiny sza dragonrez okarsligil balajis nuke2005 maryee gurkanbebek koller cjeans iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
	Relating whole-genome expression data with protein-protein interactions. [My Copy] Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46. by R. Jansen, D. Greenbaum, M. Gerstein posted to bicriteria expression linkprediction moduledetection modules networks by carlk on 2008-06-26 22:01:37 as along with 10 people saket Robinder gurkanbebek gespim grahamc cjeans iris_2001 kintoki paolomarcatili nedwards
	Integrative approach for computationally inferring protein domain interactions. [My Copy] Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 923-929. by S. K. Ng, Z. Zhang, S. H. Tan posted to domains linkprediction networks by carlk on 2008-06-26 20:59:34 as along with 4 people semin dyermd antonkratz phoenixzxl
	Predicting protein-protein interactions using signature products [My Copy] Bioinformatics, Vol. 21, No. 2. (15 January 2005), pp. 218-226. by Shawn Martin, Diana Roe, Jean-Loup Faulon posted to linkprediction networks by carlk on 2008-06-26 20:58:39 as along with 4 people pablocarb mdimmic ziquje cjeans
	Inferring domain-domain interactions from protein-protein interactions. [My Copy] Genome research, Vol. 12, No. 10. (October 2002), pp. 1540-1548. by Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen posted to expression linkprediction networks by carlk on 2008-06-26 16:02:34 as along with 7 people maryee opheliav wnpx neils Pao-Yang phoenixzxl zdai
	Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases [My Copy] PLoS Comput Biol, Vol. 3, No. 3. (30 March 2007), e42. by Benjamin A. Shoemaker, Anna R. Panchenko posted to linkprediction networks review tmpcite1 by carlk on 2008-06-15 19:09:56 as along with 12 people colmryan chica flbarroso kiekyon semin giovenko Yanno IbnBio zwang Evangelia higueruelo ethkim
	Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted to linkprediction networks review by carlk on 2008-06-15 19:09:19 as along with 25 people aceol colmryan timg cerca jperkins chica kiekyon kshameer zdai Robinder giovenko Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl Evangelia higueruelo phoenixzxl
	Protein interaction maps for complete genomes based on gene fusion events [My Copy] Nature, Vol. 402, No. 6757. (04 November 1999), pp. 86-90. by Anton J. Enright, Ioannis Iliopoulos, Nikos C. Kyrpides, Christos A. Ouzounis posted to linkprediction networks by carlk on 2008-06-12 22:29:01 as along with 6 people jperkins swp09 balajis ruvido selrac iris_2001
	Assessing the limits of genomic data integration for predicting protein networks [My Copy] Genome Research, Vol. 15, No. 7. (July 2005), pp. 945-953. by Long J. Lu, Yu Xia, Alberto Paccanaro, Haiyuan Yu, Mark Gerstein posted to linkprediction networks by carlk on 2008-06-12 20:58:54 as along with 17 people and 3 groups ashishanand paccanarolab jaimie aelef okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards brianb iris_2001 phoenixzxl Paccanaro Lab kdl Bioinformatics
	A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. [My Copy] Science, Vol. 295, No. 5553. (11 January 2002), pp. 321-324. by A. H. Tong, B. Drees, G. Nardelli, et al.G. D. Bader, B. Brannetti, L. Castagnoli, M. Evangelista, S. Ferracuti, B. Nelson, S. Paoluzi, M. Quondam, A. Zucconi, C. W. Hogue, S. Fields, C. Boone, G. Cesareni posted to integration linkprediction networks by carlk on 2008-06-12 17:55:10 as along with 5 people tomhebbron chad_davis balajis Evangelia roys
	A domain-based approach to predict protein-protein interactions [My Copy] BMC Bioinformatics, Vol. 8 (13 June 2007), 199. by Mudita Singhal, Haluk Resat posted to domains linkprediction networks by carlk on 2008-06-11 06:13:59 as along with 3 people and 1 group yas grahamc phoenixzxl T_lab
	Computational prediction of host-pathogen protein protein interactions [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i159-166. by Matthew D. Dyer, T. M. Murali, Bruno W. Sobral posted to pathogen networks linkprediction interspecies doe by carlk on 2008-06-10 20:41:06 as along with 6 people and 1 group phoenixzxl kshameer behindtherabbit operon GustavoLacerda cerca Bioinformatics
	Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service. [My Copy] BMC bioinformatics, Vol. 9 (2008) by J. G. Kim, D. Park, B. C. Kim, et al.S. W. Cho, Y. T. Kim, Y. J. Park, H. J. Cho, H. Park, K. B. Kim, K. O. Yoon, S. J. Park, B. M. Lee, J. Bhak posted to databases linkprediction networks by carlk on 2008-06-10 16:52:23 as
	A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453. by Ronald Jansen, Haiyuan Yu, Dov Greenbaum, et al.Yuval Kluger, Nevan J. Krogan, Sambath Chung, Andrew Emili, Michael Snyder, Jack F. Greenblatt, Mark Gerstein posted to integration linkprediction networks by carlk on 2008-05-23 18:20:27 as along with 23 people and 2 groups rsaito cerca hagechouchin443 aelef Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 frohike kdl EBI-regulation
	Predicting interactions in protein networks by completing defective cliques. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 7. (1 April 2006), pp. 823-829. by Haiyuan Yu, Alberto Paccanaro, Valery Trifonov, Mark Gerstein posted to complex linkprediction networks by carlk on 2008-05-23 18:20:03 as along with 4 people and 2 groups paccanarolab jiny Borelli lfriedl Paccanaro Lab kdl
	InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale [My Copy] Genome Biology, Vol. 8 (14 September 2007), R192. by Haidong Wang, Eran Segal, Asa Ben-Hur, Qianru Li, Marc Vidal, Daphne Koller posted to docking linkprediction networks protein by carlk on 2008-05-23 18:14:27 as along with 3 people Jporci cjeans zwang
	Predicting co-complexed protein pairs using genomic and proteomic data integration. [My Copy] BMC Bioinformatics, Vol. 5 (16 April 2004) by L. V. Zhang, S. L. Wong, O. D. King, F. P. Roth posted to complex integration linkprediction networks protein by carlk on 2008-05-20 20:12:40 as along with 3 people and 1 group lfriedl reidy nedwards kdl
	Predicting protein complex membership using probabilistic network reliability. [My Copy] Genome Res, Vol. 14, No. 6. (June 2004), pp. 1170-1175. by S. Asthana, O. D. King, F. D. Gibbons, F. P. Roth posted to complex linkprediction networks noise by carlk on 2008-05-20 20:12:00 as along with 1 person iris_2001
	Predicting phenotype from patterns of annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 19 Suppl 1 (2003) by O. D. King, J. C. Lee, A. M. Dudley, D. M. Janse, G. M. Church, F. P. Roth posted to linkprediction networks by carlk on 2008-05-20 20:05:33 as

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networks	301
structure	71
protein	67
functionprediction	57
scp	51
algorithms	48
modules	46
databases	38
clustering	37
moduledetection	35
linkprediction	29
review	29
go	28
yeast	28
network	26
dynamics	20
complex	20
integration	18
alignment	17
complexes	17
tmpcite1	16
brain	16
disease	16
domains	14
ssl	13
evolution	13
ppi	12
steiner	12
diseaseppi	11
flu	11
expression	11
noise	10
comparison	10
signaling	10
motifs	9
regulation	9
genomics	8
experimental	7
modularity	7
rgrg	7
regulatory	7
doe	7
reassortment	6
metabolic	6
design	6
transcription	6
human	6
energy	6
fly	6
phylogeny	5
bicliques	5
search	5
population	5
visualization	5
theory	5
diseases	4
worm	4
pathways	4
interactions	4
metagenomics	4
interspecies	4
reviews	4
connectivity	3
influenza	3
model-based	3
machinelearning	3
bicriteria	3
decisiontrees	3
bacteria	3
1918	3
docking	3
hubs	3
assembly	3
graphtheory	3
pathogen	3
standard	2
kernels	2
ontology	2
crossspecies	2
local	2
community	2
simulated_data	2
interaction	2
historical	2
genetic	2
imaging	2
disorder	2
bad	2
scores	2
celegans	2
graph_theory	2
timemachine	2
protein_protein_interactions	2
overlapping	2
distance	2
graphs	1
geography	1
emap	1
termination	1
statistics	1
reliability_estmations	1
optimization	1
wiki	1
dense	1
tandem_affinity_purification	1
neighborhoods	1
tap	1
text_mining	1
domain	1
edgeweights	1
mouse	1
orthologs	1
yeast2hybrid	1
linkprediciton	1
homology	1
spatial	1
massspec	1
mcl	1
localized	1
virus	1
sequence	1
file-import-09-01-29	1
phylogenetics	1
foodweb	1
geometry	1
gas_vessicle	1
duplications	1
ranking	1
random_graphs	1
paleodiktyology	1
alzheimer	1
sat	1
macromolecular	1
detection	1
database	1
function	1
intereaction	1
clustering_algorithms	1
integrated_network	1
multicell	1
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carlk's linkprediction [29 articles] Export

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