carlk's modules [46 articles] Export

Recent papers added to carlk's library classified by the tag modules. You can also see everyone's modules.

	Enumeration of condition-dependent dense modules in protein interaction networks [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 933-940. by Elisabeth Georgii, Sabine Dietmann, Takeaki Uno, Philipp Pagel, Koji Tsuda posted to networks modules moduledetection dense by carlk on 2009-10-24 00:04:56 as along with 6 people arne hryk eesruiz imina grahamc mhamada
	Analysis of the structure of complex networks at different resolution levels [My Copy] (15 Jan 2008) by Alex Arenas, Alberto Fernandez, Sergio Gomez posted to networks modules moduledetection modularity clustering by carlk on 2009-10-09 22:16:05 as along with 4 people snow_dragon kubyaddi sato-ryu bruno
	Structure discovery in PPI networks using pattern-based network decomposition [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1814-1821. by Philip Bachman, Ying Liu posted to networks modules moduledetection modularity model-based clustering by carlk on 2009-10-03 00:41:20 as along with 5 people colm ess30 apocapoc grahamc colmryan
	A structural approach for finding functional modules from large biological networks. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S19. by M. Mete, F. Tang, X. Xu, N. Yuruk posted to moduledetection modules networks by carlk on 2009-07-20 23:14:01 as along with 2 people cgaugain kluck
	Module identification in bipartite and directed networks. [My Copy] Physical review. E, Statistical, nonlinear, and soft matter physics, Vol. 76, No. 3 Pt 2. (September 2007) by R. Guimerà, M. Sales-Pardo, L. A. Amaral posted to modularity modules network networks by carlk on 2009-06-10 19:53:09 as along with 1 person kubyaddi
	Modularity and community detection in bipartite networks [My Copy] (5 Nov 2007) by Michael J. Barber posted to modularity modules networks by carlk on 2009-06-10 19:52:50 as along with 1 person kubyaddi
	Modular decomposition of protein-protein interaction networks. [My Copy] Genome Biol, Vol. 5, No. 8. (2004) by J. Gagneur, R. Krause, T. Bouwmeester, G. Casari posted to moduledetection modules networks by carlk on 2009-04-25 23:31:09 as along with 4 people schwartzjmc ezotenko AbnerCYH tmmurali
	CFinder: locating cliques and overlapping modules in biological networks [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 1021-1023. by Balazs Adamcsek, Gergely Palla, Illes J. Farkas, Imre Derenyi, Tamas Vicsek posted to complexes moduledetection modules networks by carlk on 2009-04-25 23:30:38 as along with 2 people lawraga ellakat
	Detection of functional modules from protein interaction networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 54, No. 1. (1 January 2004), pp. 49-57. by Jose B. Pereira-Leal, Anton J. Enright, Christos A. Ouzounis posted to complexes moduledetection modules networks by carlk on 2009-04-25 23:30:05 as along with 4 people saket ujh opheliav wnpx
	Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations [My Copy] Algorithms for Molecular Biology, Vol. 1, No. 1. (26 April 2006), 7. by Elena Zotenko, Katia S. Guimarães, Raja Jothi, Teresa M. Przytycka posted to moduledetection modules networks overlapping by carlk on 2009-04-25 23:18:15 as along with 4 people and 1 group saket lfriedl chad_davis AbnerCYH kdl
	Mapping the Structural Core of Human Cerebral Cortex [My Copy] PLoS Biol, Vol. 6, No. 7. (1 July 2008), e159. by Patric Hagmann, Leila Cammoun, Xavier Gigandet, et al.Reto Meuli, Christopher J. Honey, Van J. Wedeen, Olaf Sporns posted to brain modules networks by carlk on 2008-10-19 22:22:52 as along with 28 people and 4 groups knuu bbuchsbaum josepe isami markoffkin Bolozna flieder sdaehne yonghe ysq wei_tang telnet2 ganden muraken birdyyo pbellec krokicki bangyuzhou shoshin kristina jclau fcummins Borelli Takayuki fbaroni ackman mbolding sherdim Complex_Brain_Networks VisionLab EPLab resting-state_networks
	Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network [My Copy] Genome Biology, Vol. 5, No. 1. (2003) by Christine Brun, Francois Chevenet, David Martin, Jerome Wojcik, Alain Guenoche, Bernard Jacq posted to moduledetection modules by carlk on 2008-08-01 23:21:35 as along with 3 people gcalda jiny maralena
	Protein complex prediction via cost-based clustering [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3013-3020. by A. D. King, N. Przulj, I. Jurisica posted to moduledetection modules by carlk on 2008-08-01 21:41:43 as along with 7 people and 1 group adking80 jiny lfriedl maralena hryk cerca ethkim kdl
	Resolution limit in community detection [My Copy] Proc. Natl. Acad. Sci. USA, Vol. 104, No. 1. (2 January 2007), pp. 36-41. by Santo Fortunato, Marc Barthelemy edited by David O. Siegmund posted to moduledetection modules by carlk on 2008-08-01 21:13:14 as
	Relating whole-genome expression data with protein-protein interactions. [My Copy] Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46. by R. Jansen, D. Greenbaum, M. Gerstein posted to bicriteria expression linkprediction moduledetection modules networks by carlk on 2008-06-26 22:01:37 as along with 10 people saket Robinder gurkanbebek gespim grahamc cjeans iris_2001 kintoki paolomarcatili nedwards
	Co-clustering of biological networks and gene expression data [My Copy] Bioinformatics, Vol. 18, No. suppl_1. (1 July 2002), pp. S145-154. by Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer posted to bicriteria clustering expression moduledetection modules networks by carlk on 2008-06-20 17:20:17 as along with 5 people meanerelk poirel saket chad_davis srp33
	Functional topology in a network of protein interactions. [My Copy] Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 340-348. by N. Przulj, D. A. Wigle, I. Jurisica posted to functionprediction modules networks by carlk on 2008-06-16 21:59:07 as along with 8 people and 1 group liaofeng cerca sergiun jiny dragonrez kuhn lfriedl maralena kdl
	Comparing clusterings—an information based distance [My Copy] Journal of Multivariate Analysis, Vol. 98, No. 5. (May 2007), pp. 873-895. by M. Meila posted to algorithms modules networks by carlk on 2008-06-16 20:31:53 as along with 8 people lptolik rumig zchen singhsh sterovetta saket amac vlachmore
	Topological structure analysis of the protein-protein interaction network in budding yeast [My Copy] Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450. by Dongbo Bu, Yi Zhao, Lun Cai, et al.Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen posted to algorithms functionprediction moduledetection modules tmpcite1 yeast by carlk on 2008-06-15 18:48:28 as along with 6 people and 1 group jmenche lfriedl cjeans iris_2001 minostro ellakat kdl
	The art of gene function prediction [My Copy] Nature Biotechnology, Vol. 24, No. 12. (2006), pp. 1474-1475. by T. M. Murali, Chang-Jiun Wu, Simon Kasif posted to functionprediction moduledetection modules networks tmpcite1 by carlk on 2008-06-15 17:50:54 as along with 2 people mitko j3xucite
	Functional cartography of complex metabolic networks [My Copy] Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900. by Roger Guimera, Luis A. Nunes Amaral posted to moduledetection modules networks tmpcite1 by carlk on 2008-06-15 17:34:02 as along with 23 people and 4 groups schwartzjmc tomt21 lawraga Scis0000002 vtraag cgaugain pdelosri cswinburne camster dbk BioGeek Borelli lfriedl balajis alexg eweaver tny wnpx cjeans kdang RobMills Diego_Prada marcio streptomyces dbk-lab kdl Bioinformatics
	Consistent dissection of the protein interaction network by combining global and local metrics [My Copy] Genome Biology, Vol. 8, No. 12. (21 December 2007), R271. by Chunlin Wang, Chris Ding, Qiaofeng Yang, Stephen Holbrook posted to moduledetection modules network tmpcite1 by carlk on 2008-06-14 19:46:34 as along with 3 people grahamc cjeans barriot
	Defining and identifying communities in networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 2658-2663. by Filippo Radicchi, Claudio Castellano, Federico Cecconi, Vittorio Loreto, Domenico Parisi posted to algorithms moduledetection modules networks by carlk on 2008-06-14 19:05:50 as along with 19 people and 2 groups akavipat mussi almadana christiand vtraag kremso kubyaddi fabianavernero haewoon castellano shivaram jfr yas merazzle gcalda ltabourier sparikh tnhh Diego_Prada smc-infm T_lab
	Annotating proteins by mining protein interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 14. (15 July 2006) by M. Kirac, G. Ozsoyoglu, J. Yang posted to functionprediction go modules networks tmpcite1 by carlk on 2008-06-14 04:21:18 as along with 1 person jiny
	Functional modules by relating protein interaction networks and gene expression [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 31, No. 21. (1 November 2003), pp. 6283-6289. by Sabine Tornow, H. W. Mewes posted to bicriteria moduledetection modules networks by carlk on 2008-06-12 21:32:17 as along with 4 people yaredo saket bertelsen jiny
	Spontaneous evolution of modularity and network motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted to dynamics evolution modules networks by carlk on 2008-06-12 20:56:35 as along with 22 people and 7 groups karthikraman roys rsantana vtraag anphony ocs saket mcphee marimo monod Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina Modularity in evolutionary algorithms MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
	An Efficient Approach to Detect a Protein Community from a Seed [My Copy] Computational Intelligence in Bioinformatics and Computational Biology, 2005. CIBCB '05. Proceedings of the 2005 IEEE Symposium on (2005), pp. 1-7. by D. D. Wu, Xiaohua Hu posted to moduledetection modules networks steiner by carlk on 2008-06-12 18:33:58 as along with 1 person iris_2001
	Modular organization of cellular networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133. by Alexander W. Rives, Timothy Galitski posted to moduledetection modules networks by carlk on 2008-06-12 18:19:23 as along with 9 people lawraga ycho0610 diamantis jiny karfunkel Evangelia stefanoallesina ellakat roys
	Development and implementation of an algorithm for detection of protein complexes in large interaction networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006) by Md, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya posted to moduledetection modules networks by carlk on 2008-06-12 18:17:21 as along with 2 people jiny maralena
	An automated method for finding molecular complexes in large protein interaction networks. [My Copy] BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003) by G. D. Bader, C. W. Hogue posted to moduledetection modules networks by carlk on 2008-06-12 18:15:53 as along with 10 people and 2 groups zufar dswan waqaralikeble cswinburne jiny dragonrez lfriedl nirfriedman massivemayhem ethkim Bioinformatics kdl
	An information-theoretic framework for resolving community structure in complex networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 18. (1 May 2007), pp. 7327-7331. by Martin Rosvall, Carl T. Bergstrom posted to moduledetection modules networks by carlk on 2008-06-12 16:58:36 as along with 10 people andreassorge AaronMcDaid vtraag cgaugain Kovanen dakelley saket paultr AbnerCYH marcio
	Modular organization in the reductive evolution of protein-protein interaction networks [My Copy] Genome Biology, Vol. 8 (28 May 2007), R94. by Javier Tamames, Andres Moya, Alfonso Valencia posted to evolution modules networks by carlk on 2008-06-11 06:15:37 as along with 1 person grahamc
	Computing Communities in Large Networks Using Random Walks [My Copy] Computer and Information Sciences - ISCIS 2005 (2005), pp. 284-293. by Pascal Pons, Matthieu Latapy posted to algorithms modules networks by carlk on 2008-06-01 03:33:10 as along with 1 person studentx
	Finding and evaluating community structure in networks [My Copy] Physical Review E, Vol. 69, No. 2. (Feb 2004), 026113. by M. E. J. Newman, M. Girvan posted to moduledetection modules networks by carlk on 2008-05-29 21:25:28 as along with 19 people and 1 group AaronMcDaid almadana lawraga senseable-urb diamantis rsantana panisson vtraag jyew muraken cgaugain davidecellai lshaw gcalda RobMills hannu Diego_Prada ilkert ddahlem ThinkTank
	Modularity and community structure in networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582. by M. E. J. Newman posted to modules networks by carlk on 2008-05-23 18:23:09 as along with 34 people and 4 groups Sergey_gerbek RayRa houniao007 gagliol spool jago thegoose tnhh daforerog pdlug senseable-urb tomhebbron dakelley rsantana orahcio vtraag dartar aqeel ChaTo jfr yas balicea ddahlem cmm fukken kubyaddi adriandefroment gcalda hannu marcio phreeza Diego_Prada ellakat jjray complex networks T_lab FAB-lab ThinkTank
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to functionprediction integration moduledetection modules networks by carlk on 2008-05-23 18:13:26 as along with 18 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar roys frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat
	Identification and analysis of evolutionarily cohesive functional modules in protein networks. [My Copy] Genome Res (31 January 2006) by Mónica Campillos, Christian von Mering, Lars Juhl J. Jensen, Peer Bork posted to functionprediction modules networks by carlk on 2008-05-23 18:10:32 as along with 8 people and 2 groups Garamonfok lfriedl balajis nirfriedman nickluscombe koller dbgoodman larsjuhljensen kdl EBI-regulation
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to modules networks yeast by carlk on 2008-05-23 18:01:03 as along with 31 people and 10 groups aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to modules networks regulatory by carlk on 2008-05-23 17:59:07 as along with 17 people and 1 group meanerelk stharward myzhang wangbo Borelli ggrot dragonrez bayesian wnpx nickluscombe koller frohike karfunkel roys dquest balicea tvdbulck EBI-regulation
	Revealing static and dynamic modular architecture of the eukaryotic protein interaction network [My Copy] Mol Syst Biol, Vol. 3 (24 April 2007) by Kakajan Komurov, Michael White posted to dynamics modules networks protein rgrg yeast by carlk on 2008-05-23 17:46:55 as along with 8 people Borelli tomhebbron massivemayhem nicoleq zwang mingzhi phoenixzxl ellakat
	Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction [My Copy] PLoS Biology, Vol. 5, No. 6. (1 June 2007), e154. by Nizar N. Batada, Teresa Reguly, Ashton Breitkreutz, et al.Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D. Hurst, Mike Tyers posted to modules networks yeast by carlk on 2008-05-23 17:44:18 as along with 4 people lawraga winterschlaefer antonkratz cdeane
	Stratus Not Altocumulus: A New View of the Yeast Protein Interaction Network [My Copy] PLoS Biol, Vol. 4, No. 10. (19 September 2006), e317. by Nizar N. Batada, Teresa Reguly, Ashton Breitkreutz, et al.Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D. Hurst, Mike Tyers posted to modules networks by carlk on 2008-05-23 17:43:50 as along with 8 people mgomes lawraga aswin jpoyatos iris_2001 winterschlaefer Evangelia cdeane
	Protein complexes and functional modules in molecular networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128. by Victor Spirin, Leonid A. Mirny posted to moduledetection modules networks by carlk on 2008-05-23 17:43:11 as along with 15 people and 4 groups lawraga ycho0610 diamantis jiny camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou Evangelia grahamc biehl ellakat dbk-lab biophysics HIV_DR bioNetwork_sysBio
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted to modules networks review by carlk on 2008-05-23 17:42:43 as along with 27 people and 8 groups antonkratz dagmar biomcgary poirel bertelsen Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori awooga tvdbulck vsausg dragonrez EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
	Information-theoretic approach to network modularity [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 71, No. 4. (2005) by Etay Ziv, Manuel Middendorf, Chris H. Wiggins posted to moduledetection modules by carlk on 2008-05-20 20:32:42 as along with 1 person jwhitney
	Evaluation of clustering algorithms for protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 488. by Sylvain Brohee, Jacques van Helden posted to moduledetection modules networks tmpcite1 by carlk on 2008-05-20 20:30:48 as along with 16 people and 1 group kaarsinogen pdelosri jfr chad_davis balajis nirfriedman dquest grahamc cjeans hpaces Pao-Yang oktie Borelli AbnerCYH cerca ethkim EPFL_SB_ITP_LBS

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networks	301
structure	71
protein	67
functionprediction	57
scp	51
algorithms	48
modules	46
databases	38
clustering	37
moduledetection	35
linkprediction	29
review	29
go	28
yeast	28
network	26
dynamics	20
complex	20
integration	18
alignment	17
complexes	17
tmpcite1	16
brain	16
disease	16
domains	14
ssl	13
evolution	13
ppi	12
steiner	12
diseaseppi	11
flu	11
expression	11
noise	10
comparison	10
signaling	10
motifs	9
regulation	9
genomics	8
experimental	7
modularity	7
rgrg	7
regulatory	7
doe	7
reassortment	6
metabolic	6
design	6
transcription	6
human	6
energy	6
fly	6
phylogeny	5
bicliques	5
search	5
population	5
visualization	5
theory	5
diseases	4
worm	4
pathways	4
interactions	4
metagenomics	4
interspecies	4
reviews	4
connectivity	3
influenza	3
model-based	3
machinelearning	3
bicriteria	3
decisiontrees	3
bacteria	3
1918	3
docking	3
hubs	3
assembly	3
graphtheory	3
pathogen	3
standard	2
kernels	2
ontology	2
crossspecies	2
local	2
community	2
simulated_data	2
interaction	2
historical	2
genetic	2
imaging	2
disorder	2
bad	2
scores	2
celegans	2
graph_theory	2
timemachine	2
protein_protein_interactions	2
overlapping	2
distance	2
graphs	1
geography	1
emap	1
termination	1
statistics	1
reliability_estmations	1
optimization	1
wiki	1
dense	1
tandem_affinity_purification	1
neighborhoods	1
tap	1
text_mining	1
domain	1
edgeweights	1
mouse	1
orthologs	1
yeast2hybrid	1
linkprediciton	1
homology	1
spatial	1
massspec	1
mcl	1
localized	1
virus	1
sequence	1
file-import-09-01-29	1
phylogenetics	1
foodweb	1
geometry	1
gas_vessicle	1
duplications	1
ranking	1
random_graphs	1
paleodiktyology	1
alzheimer	1
sat	1
macromolecular	1
detection	1
database	1
function	1
intereaction	1
clustering_algorithms	1
integrated_network	1
multicell	1
lattice	1

carlk's modules [46 articles] Export

carlk's tags