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	Exploration of Uncharted Regions of the Protein Universe [My Copy] PLoS Biol, Vol. 7, No. 9. (29 September 2009), e1000205. by Lukasz Jaroszewski, Zhanwen Li, Sri S. Krishna, et al.Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik posted to structure protein by carlk on 2009-10-05 18:13:20 as along with 5 people and 2 groups kiekyon CorinYeats bpcusack ppgardne druvus Orengo Group Journal Picks Journal picks
	Ultra-Fast Evaluation of Protein Energies Directly from Sequence [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006), e63. by Gevorg Grigoryan, Fei Zhou, Steve R. Lustig, Gerbrand Ceder, Dane Morgan, Amy E. Keating posted to complex complexes energy structure by carlk on 2009-04-27 22:42:07 as along with 3 people kevinchannon wouterboomsma chgjb
	Structural Polymorphism of 441-Residue Tau at Single Residue Resolution [My Copy] PLoS Biol, Vol. 7, No. 2. (17 February 2009), e1000034. by Marco D. Mukrasch, Stefan Bibow, Jegannath Korukottu, et al.Sadasivam Jeganathan, Jacek Biernat, Christian Griesinger, Eckhard Mandelkow, Markus Zweckstetter posted to disorder protein structure by carlk on 2009-04-27 22:29:13 as along with 4 people saxstau robfsouza kintoki ForestAngstrom
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to complex complexes macromolecular review structure by carlk on 2009-04-17 15:28:06 as along with 10 people dgront bmduggan choonpeng mijam kgutwin phoenixzxl krapnik flbarroso saunders gisle
	Design of protein-interaction specificity gives selective bZIP-binding peptides [My Copy] Nature, Vol. 458, No. 7240. (16 April 2009), pp. 859-864. by Gevorg Grigoryan, Aaron W. Reinke, Amy E. Keating posted to design structure by carlk on 2009-04-17 15:17:43 as along with 7 people kgutwin kevinchannon pablocarb twatanab absterga phoenixzxl jbhiatt
	PROTCOM: searchable database of protein complexes enhanced with domain-domain structures. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by Petras J. Kundrotas, Emil Alexov posted to databases protein structure by carlk on 2009-04-12 04:42:33 as along with 3 people higueruelo bicko chad_davis
	RNA polymerase II structure: from core to functional complexes [My Copy] Current Opinion in Genetics & Development, Vol. 14, No. 2. (April 2004), pp. 218-226. by Patrick Cramer posted to protein structure by carlk on 2009-04-12 04:40:08 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Feature-preserving adaptive mesh generation for molecular shape modeling and simulation [My Copy] Journal of Molecular Graphics and Modelling, Vol. In Press, Corrected Proof by Zeyun Yu, Michael J. Holst, Yuhui Cheng, Mccammon posted to protein structure by carlk on 2009-04-12 04:09:30 as along with 2 people and 1 group choonpeng sobolevnrm baker-group
	Complex molecular assemblies at hand via interactive simulations. [My Copy] Journal of computational chemistry (7 April 2009) by Olivier Delalande, Nicolas Férey, Gilles Grasseau, Marc Baaden posted to protein structure by carlk on 2009-04-10 18:09:59 as
	Protein-protein interaction and quaternary structure. [My Copy] Quarterly reviews of biophysics, Vol. 41, No. 2. (May 2008), pp. 133-180. by J. Janin, R. P. Bahadur, P. Chakrabarti posted to networks reviews structure by carlk on 2009-04-10 18:09:41 as along with 2 people flbarroso higueruelo
	Multiscale methods for macromolecular simulations [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 5. (October 2008), pp. 630-640. by P. Sherwood, B. Brooks, M. Sansom posted to protein review structure by carlk on 2009-04-10 18:05:44 as along with 6 people and 1 group jonathancooper xavierprat flbarroso aqeel choonpeng jmccammon McCammon
	Integrating Diverse Data for Structure Determination of Macromolecular Assemblies [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (4 March 2008), pp. 443-477. by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali posted to protein structure by carlk on 2009-04-10 18:05:32 as along with 5 people mijam kgutwin noraziz chad_davis phoenixzxl
	From the Cover: The network of sequence flow between protein structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 28. (10 July 2007), pp. 11627-11632. by Leonid Meyerguz, Jon Kleinberg, Ron Elber posted to networks ppi structure by carlk on 2009-03-11 04:15:41 as along with 2 people saket j3xucite
	Excluded volume in protein side-chain packing [My Copy] Journal of Molecular Biology, Vol. 311, No. 1. (03 August 2001), pp. 183-193. by E. Kussell posted to energy protein scp structure by carlk on 2008-06-30 14:47:13 as along with 2 people and 2 groups sebk ana structural_bioinformatics Bioinformatics
	Fitting protein chains to cubic lattice is NP-complete. [My Copy] Journal of bioinformatics and computational biology, Vol. 6, No. 1. (February 2008), pp. 93-106. by J. Manuch, D. R. Gaur posted to lattice protein scp structure by carlk on 2008-06-26 19:05:51 as
	A Merge-Decoupling Dead End Elimination algorithm for protein side-chain conformation. [My Copy] International journal of data mining and bioinformatics, Vol. 1, No. 4. (2007), pp. 372-388. by K. F. Chong, H. W. Leong posted to algorithms protein scp structure by carlk on 2008-06-26 19:04:21 as
	Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains. [My Copy] Protein engineering, Vol. 8, No. 8. (August 1995), pp. 815-822. by I. Lasters, M. De Maeyer, J. Desmet posted to algorithms protein scp structure by carlk on 2008-06-26 19:00:03 as along with 1 person dfgreen
	A graph-theoretic algorithm for comparative modeling of protein structure. [My Copy] Journal of molecular biology, Vol. 279, No. 1. (29 May 1998), pp. 287-302. by R. Samudrala, J. Moult posted to algorithms protein scp structure by carlk on 2008-06-26 18:59:24 as
	Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment. [My Copy] Journal of computational chemistry, Vol. 24, No. 15. (30 November 2003), pp. 1950-1961. by R. Gautier, P. Tufféry posted to algorithms protein scp structure by carlk on 2008-06-26 18:59:10 as
	A new approach to the rapid determination of protein side chain conformations. [My Copy] J Biomol Struct Dyn, Vol. 8, No. 6. (June 1991), pp. 1267-1289. by P. Tuffery, C. Etchebest, S. Hazout, R. Lavery posted to algorithms historical protein scp structure by carlk on 2008-06-26 18:58:46 as along with 1 person dgront
	Dead-end based modeling tools to explore the sequence space that is compatible with a given scaffold. [My Copy] Journal of protein chemistry, Vol. 16, No. 5. (July 1997), pp. 449-452. by I. Lasters, J. Desmet, M. De Maeyer posted to algorithms energy protein scp structure by carlk on 2008-06-26 18:58:26 as
	Protein design automation. [My Copy] Protein Sci, Vol. 5, No. 5. (May 1996), pp. 895-903. by B. I. Dahiyat, S. L. Mayo posted to algorithms energy protein scp structure by carlk on 2008-06-26 18:57:55 as along with 4 people and 1 group dfgreen jwm shuns nknii TCR_Signaling
	A new pairwise folding potential based on improved decoy generation and side-chain packing. [My Copy] Proteins, Vol. 54, No. 2. (1 February 2004), pp. 303-314. by C. Loose, J. L. Klepeis, C. A. Floudas posted to energy protein scp structure by carlk on 2008-06-26 18:57:20 as
	Prediction and evaluation of side-chain conformations for protein backbone structures. [My Copy] Proteins, Vol. 26, No. 3. (November 1996), pp. 323-352. by P. S. Shenkin, H. Farid, J. S. Fetrow posted to algorithms historical protein scp structure by carlk on 2008-06-26 18:56:52 as
	Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure. [My Copy] Biopolymers, Vol. 59, No. 2. (August 2001), pp. 72-86. by J. Mendes, H. A. Nagarajaram, C. M. Soares, T. L. Blundell, M. A. Carrondo posted to algorithms protein scp structure by carlk on 2008-06-26 18:56:29 as along with 1 person medic0747
	Point matching under non-uniform distortions and protein side chain packing based on an efficient maximum clique algorithm. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 13 (2002), pp. 143-152. by B. K. Dukka, T. Akutsu, E. Tomita, T. Seki, A. Fujiyama posted to algorithms protein scp structure by carlk on 2008-06-26 18:54:29 as
	Determinants of protein side-chain packing. [My Copy] Protein science : a publication of the Protein Society, Vol. 3, No. 12. (December 1994), pp. 2358-2365. by R. Tanimura, A. Kidera, H. Nakamura posted to protein scp structure by carlk on 2008-06-26 18:53:48 as along with 1 person carlosjavierna
	The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins. [My Copy] Protein science : a publication of the Protein Society, Vol. 4, No. 11. (November 1995), pp. 2300-2309. by S. Y. Chung, S. Subbiah posted to protein scp structure virus by carlk on 2008-06-26 18:52:59 as
	Analysis of side-chain rotamers in transmembrane proteins. [My Copy] Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469. by A. K. Chamberlain, J. U. Bowie posted to protein scp structure by carlk on 2008-06-26 18:51:26 as along with 1 person and 1 group xdeupi LabCompMed
	Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool [My Copy] Journal of Molecular Biology, Vol. 267, No. 5. (18 April 1997), pp. 1268-1282. by M. Bower posted to algorithms protein scp structure by carlk on 2008-06-26 18:50:21 as along with 6 people and 1 group carlosjavierna kaarsinogen nknii blackbart mijam jwm TCR_Signaling
	A graph-theory algorithm for rapid protein side-chain prediction. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2001-2014. by A. A. Canutescu, A. A. Shelenkov, R. L. Dunbrack posted to algorithms protein scp structure by carlk on 2008-06-26 18:50:04 as along with 11 people oceanwind mcbla karbak nigham bicko blackbart bluvsh1 rsantana mijam jwm newton1234
	A tree-decomposition approach to protein structure prediction. [My Copy] Proc IEEE Comput Syst Bioinform Conf (2005), pp. 247-256. by J. Xu, F. Jiao, B. Berger posted to algorithms protein scp structure by carlk on 2008-06-26 18:49:50 as along with 1 person j3xucite
	1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlap. [My Copy] J Comput Biol, Vol. 11, No. 1. (2004), pp. 27-52. by A. Caprara, R. Carr, S. Istrail, G. Lancia, B. Walenz posted to alignment protein structure by carlk on 2008-06-26 18:34:32 as along with 2 people and 2 groups ana vavi structural_bioinformatics Bioinformatics
	The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2008), NA. by Ivelin Georgiev, Ryan H. Lilien, Bruce R. Donald posted to design protein scp structure by carlk on 2008-06-26 18:33:10 as along with 2 people dfgreen RamuAnandakrishnan
	Dead-end elimination for multistate protein design. [My Copy] Journal of computational chemistry, Vol. 28, No. 13. (October 2007), pp. 2122-2129. by C. Yanover, M. Fromer, J. M. Shifman posted to design protein scp structure by carlk on 2008-06-26 18:31:58 as along with 1 person dfgreen
	Dead-end elimination with backbone flexibility. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007) by I. Georgiev, B. R. Donald posted to scp structure by carlk on 2008-06-26 18:31:28 as along with 1 person dfgreen
	A reduction-based exact algorithm for the contact map overlap problem. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 5. (June 2007), pp. 637-654. by W. Xie, N. V. Sahinidis posted to alignment protein structure by carlk on 2008-06-26 18:30:29 as
	Matt: Local Flexibility Aids Protein Multiple Structure Alignment. [My Copy] PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008) by Matthew Menke, Bonnie Berger, Lenore Cowen posted to alignment structure by carlk on 2008-06-26 18:29:44 as along with 3 people sebk dimka marti
	Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 14. (15 July 2006) by I. Georgiev, R. H. Lilien, B. R. Donald posted to algorithms protein scp structure by carlk on 2008-06-26 18:29:07 as along with 1 person dfgreen
	Protein side-chain packing problem: a maximum edge-weight clique algorithmic approach. [My Copy] Journal of bioinformatics and computational biology, Vol. 3, No. 1. (February 2005), pp. 103-126. by K. C. Dukka Bahadur, E. Tomita, J. Suzuki, T. Akutsu posted to algorithms protein scp structure by carlk on 2008-06-26 18:27:44 as
	Residue-rotamer-reduction algorithm for the protein side-chain conformation problem [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 188-194. by Wei Xie, Nikolaos V. Sahinidis posted to algorithms protein scp structure by carlk on 2008-06-26 18:26:40 as along with 4 people and 2 groups dfgreen bicko marcius bluvsh1 BioinfoCIPF SGU-CIPF
	Exploring conformational space using a mean field technique with MOLS sampling. [My Copy] Journal of biosciences, Vol. 32, No. 5. (August 2007), pp. 909-920. by P. A. Prasad, V. Kanagasabai, J. Arunachalam, N. Gautham posted to algorithms energy protein scp structure by carlk on 2008-06-26 18:25:42 as
	IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models. [My Copy] Protein science : a publication of the Protein Society, Vol. 16, No. 7. (July 2007), pp. 1294-1307. by C. Hartmann, I. Antes, T. Lengauer posted to algorithms protein scp search structure by carlk on 2008-06-26 18:24:57 as
	Analysis of side-chain orientations in homologous proteins. [My Copy] J Mol Biol, Vol. 196, No. 1. (5 July 1987), pp. 175-198. by N. L. Summers, W. D. Carlson, M. Karplus posted to scp structure by carlk on 2008-06-26 18:23:35 as along with 1 person blackbart
	Rotamers: To be or not to be? An Analysis of Amino Acid Side-chain Conformations in Globular Proteins [My Copy] Journal of Molecular Biology, Vol. 230, No. 2. (20 March 1993), pp. 592-612. by H. Schrauber posted to protein scp structure by carlk on 2008-06-26 18:23:08 as along with 3 people carlosjavierna aqeel blackbart
	Efficient rotamer elimination applied to protein side-chains and related spin glasses. [My Copy] Biophys J, Vol. 66, No. 5. (May 1994), pp. 1335-1340. by R. F. Goldstein posted to algorithms protein scp structure by carlk on 2008-06-26 18:22:22 as along with 6 people dfgreen dgront bluvsh1 kazemi rsantana mijam
	Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures. [My Copy] Proteins, Vol. 26, No. 4. (December 1996), pp. 363-376. by R. W. Hooft, C. Sander, G. Vriend posted to scp structure by carlk on 2008-06-26 18:21:59 as along with 1 person lna
	Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods. [My Copy] Proteins, Vol. 33, No. 2. (1 November 1998), pp. 204-217. by E. S. Huang, P. Koehl, M. Levitt, R. V. Pappu, J. W. Ponder posted to scp structure by carlk on 2008-06-26 18:21:17 as
	Flexible docking allowing induced fit in proteins: insights from an open to closed conformational isomers. [My Copy] Proteins, Vol. 32, No. 2. (1 August 1998), pp. 159-174. by B. Sandak, H. J. Wolfson, R. Nussinov posted to docking structure by carlk on 2008-06-26 18:20:39 as along with 1 person blackbart
	Strain in protein structures as viewed through nonrotameric side chains: I. their position and interaction. [My Copy] Proteins, Vol. 37, No. 1. (1 October 1999), pp. 30-43. by J. Heringa, P. Argos posted to scp structure by carlk on 2008-06-26 18:20:08 as along with 1 person blackbart

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