carlk's yeast [28 articles] Export

Recent papers added to carlk's library classified by the tag yeast. You can also see everyone's yeast.

	Uncovering the rules for protein-protein interactions from yeast genomic data. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 10. (10 March 2009), pp. 3752-3757. by Jin Wang, Chunhe Li, Erkang Wang, Xidi Wang posted to yeast networks network linkprediction by carlk on 2009-10-24 00:05:32 as along with 8 people and 1 group guhjy AbnerCYH sobolevnrm mariap3636 mstumpf grahamc zwang phoenixzxl baker-group
	A Complex-based Reconstruction of the Saccharomyces cerevisiae Interactome [My Copy] Mol Cell Proteomics, Vol. 8, No. 6. (1 June 2009), pp. 1361-1381. by Haidong Wang, Boyko Kakaradov, Sean R. Collins, et al.Lena Karotki, Dorothea Fiedler, Michael Shales, Kevan M. Shokat, Tobias C. Walther, Nevan J. Krogan, Daphne Koller posted to yeast networks complexes complex by carlk on 2009-10-24 00:04:00 as along with 2 people ptrobajo anf
	Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 12, No. 6. (g 2005), pp. 835-846. by Roded Sharan, Trey Ideker, Brian Kelley, Ron Shamir, Richard M. Karp posted to yeast network complexes complex comparison alignment by carlk on 2009-09-10 18:23:17 as along with 3 people and 1 group chica okarsligil nuke2005 Bioinformatics
	Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae [My Copy] Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11. by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, et al.Bobby J. Breitkreutz, Gary Hon, Chad Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga Troyanskya, Trey Ideker, Kara Dolinski, Nizar Batada, Mike Tyers posted to databases networks yeast by carlk on 2009-07-16 22:13:06 as along with 18 people and 3 groups snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 sgoetz shikin s041629 pmendes mtruksa chasmand kdl EBI-regulation GeneGo
	Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. [My Copy] Genome research, Vol. 14, No. 6. (June 2004), pp. 1107-1118. by Haiyuan Yu, Nicholas M. Luscombe, Hao Xin X. Lu, et al.Xiaowei Zhu, Yu Xia, Jing-Dong D. Han, Nicolas Bertin, Sambath Chung, Marc Vidal, Mark Gerstein posted to crossspecies fly functionprediction worm yeast by carlk on 2009-03-10 20:54:17 as along with 12 people and 1 group kiekyon rsaito thegoose2 robfsouza tharris bicko dragonrez chad_davis balajis koller cjeans cerca C. elegans / WormBase
	Global analysis of protein localization in budding yeast [My Copy] Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691. by Won-Ki Huh, James V. Falvo, Luke C. Gerke, et al.Adam S. Carroll, Russell W. Howson, Jonathan S. Weissman, Erin K. O'Shea posted to localized networks yeast by carlk on 2008-12-14 04:55:43 as along with 15 people and 2 groups Shibby MarcJungbluth thegoose2 mmcclean tharris Cortel lfriedl opheliav rebeccahainess nirfriedman hplatero gurkanbebek koller raiyar iris_2001 C. elegans / WormBase kdl
	An in Vivo Map of the Yeast Protein Interactome [My Copy] Science, Vol. 320, No. 5882. (13 June 2008), pp. 1465-1470. by Kirill Tarassov, Vincent Messier, Christian R. Landry, et al.Stevo Radinovic, Mercedes M. Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W. Michnick posted to databases network networks protein yeast by carlk on 2008-12-14 01:44:52 as along with 8 people semin roys ocs thomaskelder Petersarkies renatomilani zwang balicea
	Global Mapping of the Yeast Genetic Interaction Network [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 808-813. by Amy H. Tong, Guillaume Lesage, Gary D. Bader, et al.Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F. Berriz, Renee L. Brost, Michael Chang, YiQun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S. Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N. Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B. Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L. Wong, Lan V. Zhang, Hongwei Zhu, Christopher G. Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P. Roth, Grant W. Brown, Brenda Andrews, Howard Bussey, Charles Boone posted to experimental ssl yeast by carlk on 2008-08-11 23:36:44 as along with 30 people and 2 groups kentz colmryan meanerelk rdowell TheresaNiederberger dakelley kinop nzm roys ajbattle czeller ldfu pcahan1 lfriedl lyongu luispedro opheliav tabu Chue nirfriedman nickluscombe koller raiyar patrycjam patrycja_missiuro jiny chasmand tresch Takayuki ksiek kdl EBI-regulation
	A novel genetic system to detect protein-protein interactions. [My Copy] Nature, Vol. 340, No. 6230. (20 July 1989), pp. 245-246. by S. Fields, O. Song posted to experimental networks tmpcite1 yeast by carlk on 2008-06-15 19:11:16 as along with 9 people lpfernandes caldavis shivaram helenc gurkanbebek Dualsystems grahamc selrac bicko
	Topological structure analysis of the protein-protein interaction network in budding yeast [My Copy] Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450. by Dongbo Bu, Yi Zhao, Lun Cai, et al.Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen posted to algorithms functionprediction moduledetection modules tmpcite1 yeast by carlk on 2008-06-15 18:48:28 as along with 6 people and 1 group jmenche lfriedl cjeans iris_2001 minostro ellakat kdl
	MPact: the MIPS protein interaction resource on yeast. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by U. Güldener, M. Münsterkötter, M. Oesterheld, et al.P. Pagel, A. Ruepp, H. W. Mewes, V. Stümpflen posted to databases networks yeast by carlk on 2008-06-12 20:53:25 as along with 2 people chad_davis raiyar
	A network of protein-protein interactions in yeast. [My Copy] Nat Biotechnol, Vol. 18, No. 12. (December 2000), pp. 1257-1261. by B. Schwikowski, P. Uetz, S. Fields posted to databases experimental networks yeast by carlk on 2008-06-12 17:22:40 as along with 7 people and 1 group nolodie fisherp davidecellai dragonrez ichbins81 winterschlaefer jiny Network Analysis of Genes Regulated in Renal Diseases
	A comprehensive two-hybrid analysis to explore the yeast protein interactome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574. by T. Ito, T. Chiba, R. Ozawa, M. Yoshida, M. Hattori, Y. Sakaki posted to databases networks yeast by carlk on 2008-06-12 14:59:47 as along with 20 people and 2 groups aceol MarcJungbluth chica lawraga semin kristallreiner adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda lpfernandes shikin hplatero csanford kdl Bioinformatics
	A comprehensive analysis of protein\|[ndash]\|protein interactions in Saccharomyces cerevisiae [My Copy] Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627. by Peter Uetz, Loic Giot, Gerard Cagney, et al.Traci A. Mansfield, Richard S. Judson, James R. Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M. Rothberg posted to databases networks yeast by carlk on 2008-06-12 14:57:47 as along with 20 people and 1 group aceol mtaschuk nzm mgomes lawraga semin dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre ruvido gcalda grahamc laughcry hplatero csanford kdl
	The MoVIN server for the analysis of protein interaction networks. [My Copy] BMC bioinformatics, Vol. 9 Suppl 2 (2008) by P. Marcatili, G. Bussotti, A. Tramontano posted to databases domains networks yeast by carlk on 2008-06-10 16:47:57 as along with 3 people kluck maralena guhjy
	Gene Ontology annotations at SGD: new data sources and annotation methods. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (3 January 2008), gkm909. by Eurie L. Hong, Rama Balakrishnan, Qing Dong, et al.Karen R. Christie, Julie Park, Gail Binkley, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kathy K. Zhu, Kara Dolinski, David Botstein, J. Michael Cherry posted to go yeast by carlk on 2008-06-03 16:09:27 as along with 5 people fgibson michaelbarton taroleo dullhunk hplatero
	Functional Analysis of Gene Duplications in Saccharomyces cerevisiae [My Copy] Genetics, Vol. 175, No. 2. (1 February 2007), pp. 933-943. by Yuanfang Guan, Maitreya J. Dunham, Olga G. Troyanskaya posted to duplications functionprediction networks yeast by carlk on 2008-05-29 19:52:43 as along with 4 people and 1 group pradiptaray TaqSys csaveanu cisevol cis-regulatory-evolution
	A global view of the selection forces in the evolution of yeast cis-regulation. [My Copy] Genome Res, Vol. 14, No. 5. (May 2004), pp. 829-834. by A. Tanay, I. Gat-Viks, R. Shamir posted to networks regulation yeast by carlk on 2008-05-23 18:03:04 as along with 2 people briann koller
	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae [My Copy] Nature, Vol. 440, No. 7084. (22 March 2006), pp. 637-643. by Nevan J. Krogan, Gerard Cagney, Haiyuan Yu, et al.Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P. Tikuisis, Thanuja Punna, Josã© M. Peregrãn-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D. Robinson, Alberto Paccanaro, James E. Bray, Anthony Sheung, Bryan Beattie, Dawn P. Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M. Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R. Collins, Shamanta Chandran, Robin Haw, Jennifer J. Rilstone, Kiran Gandi, Natalie J. Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy H. Y. Lam, Gareth Butland, Amin M. Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S. Weissman, James C. Ingles, Timothy R. Hughes, John Parkinson, Mark Gerstein, Shoshana J. Wodak, Andrew Emili, Jack F. Greenblatt posted to complex networks yeast by carlk on 2008-05-23 18:01:37 as along with 30 people and 5 groups aceol mpotamias paccanarolab ajbattle mgomes jxl bicko cerca jiny Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar cjeans nicoleq Evangelia csaveanu frohike hplatero chasmand mapplab ethkim Paccanaro Lab kdl EBI-regulation BioinfoCIPF SGU-CIPF
	Proteome survey reveals modularity of the yeast cell machinery [My Copy] Nature, Vol. 440, No. 7084. (22 January 2006), pp. 631-636. by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, et al.Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J. Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M. Rick, Bernhard Kuster, Peer Bork, Robert B. Russell, Giulio Superti-Furga posted to modules networks yeast by carlk on 2008-05-23 18:01:03 as along with 31 people and 10 groups aceol tomhebbron ajbattle mgomes Scis0000002 lawraga bicko saket Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl larsjuhljensen ellakat frohike ethkim structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
	Evolution and topology in the yeast protein interaction network. [My Copy] Genome Res, Vol. 14, No. 7. (July 2004), pp. 1310-1314. by S. Wuchty posted to dynamics evolution networks protein yeast by carlk on 2008-05-23 17:58:33 as along with 2 people koller friendpine
	Target hub proteins serve as master regulators of development in yeast. [My Copy] Genes Dev, Vol. 20, No. 4. (15 February 2006), pp. 435-448. by A. R. Borneman, J. A. Leigh-Bell, H. Yu, P. Bertone, M. Gerstein, M. Snyder posted to hubs networks regulation yeast by carlk on 2008-05-23 17:55:48 as along with 3 people and 1 group nickluscombe aswin koller EBI-regulation
	Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network [My Copy] Journal of Biology, Vol. 4, No. 2. (2005), 6. by Lan Zhang, Oliver King, Sharyl Wong, et al.Debra Goldberg, Amy Tong, Guillaume Lesage, Brenda Andrews, Howard Bussey, Charles Boone, Frederick Roth posted to motifs networks yeast by carlk on 2008-05-23 17:53:59 as along with 11 people and 1 group colmryan lfriedl marcora jjray ssb benny nirfriedman koller iris_2001 gwcarter ksiek kdl
	Global analysis of protein phosphorylation in yeast [My Copy] Nature, Vol. 438, No. 7068., pp. 679-684. by Jason Ptacek, Geeta Devgan, Gregory Michaud, et al.Heng Zhu, Xiaowei Zhu, Joseph Fasolo, Hong Guo, Ghil Jona, Ashton Breitkreutz, Richelle Sopko, Rhonda R. Mccartney, Martin C. Schmidt, Najma Rachidi, Soo-Jung Lee, Angie S. Mah, Lihao Meng, Michael J. R. Stark, David F. Stern, Claudio De Virgilio, Mike Tyers, Brenda Andrews, Mark Gerstein, Barry Schweitzer, Paul F. Predki, Michael Snyder posted to networks protein signaling yeast by carlk on 2008-05-23 17:50:48 as along with 11 people and 1 group rsaito nedwards coela nzm MarcJungbluth tmmurali tuck balabu nickluscombe koller neils EBI-regulation
	Revealing static and dynamic modular architecture of the eukaryotic protein interaction network [My Copy] Mol Syst Biol, Vol. 3 (24 April 2007) by Kakajan Komurov, Michael White posted to dynamics modules networks protein rgrg yeast by carlk on 2008-05-23 17:46:55 as along with 8 people Borelli tomhebbron massivemayhem nicoleq zwang mingzhi phoenixzxl ellakat
	Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction [My Copy] PLoS Biology, Vol. 5, No. 6. (1 June 2007), e154. by Nizar N. Batada, Teresa Reguly, Ashton Breitkreutz, et al.Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D. Hurst, Mike Tyers posted to modules networks yeast by carlk on 2008-05-23 17:44:18 as along with 4 people lawraga winterschlaefer antonkratz cdeane
	Evidence for dynamically organized modularity in the yeast protein\|[ndash]\|protein interaction network [My Copy] Nature, Vol. 430, No. 6995. (09 June 2004), pp. 88-93. by Jing-Dong J. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. M. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted to moduledetection networks protein yeast by carlk on 2008-05-23 17:42:09 as along with 31 people and 2 groups aceol daveGerrard colmryan mgomes saket lawraga diamantis davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek kdl GeneGo
	Dynamic complex formation during the yeast cell cycle. [My Copy] Science (New York, N.Y.), Vol. 307, No. 5710. (4 February 2005), pp. 724-727. by U. de Lichtenberg, L. J. Jensen, S. Brunak, P. Bork posted to complex dynamics networks yeast by carlk on 2008-05-23 17:41:44 as along with 12 people and 1 group chica mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne phoenixzxl larsjuhljensen gjuggler dIEMoSIRIS

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networks	301
structure	71
protein	67
functionprediction	57
scp	51
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modules	46
databases	38
clustering	37
moduledetection	35
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review	29
go	28
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complex	20
integration	18
alignment	17
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ssl	13
evolution	13
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regulation	9
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bad	2
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timemachine	2
protein_protein_interactions	2
overlapping	2
distance	2
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geography	1
emap	1
termination	1
statistics	1
reliability_estmations	1
optimization	1
wiki	1
dense	1
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neighborhoods	1
tap	1
text_mining	1
domain	1
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yeast2hybrid	1
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file-import-09-01-29	1
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integrated_network	1
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carlk's yeast [28 articles] Export

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