carlosjavierna's folding [61 articles] Export

Recent papers added to carlosjavierna's library classified by the tag folding. You can also see everyone's folding.

	Native-unlike long-lived intermediates along the folding pathway of the amyloidogenic protein Î²2-microglobulin revealed by real time 2D NMR [My Copy] Journal of Biological Chemistry (22 December 2009) by Alessandra Corazza, Enrico Rennella, Paul Schanda, et al.Maria C. Mimmi, Thomas Cutuil, Sara Raimondi, Sofia Giorgetti, Federico Fogolari, Paolo Viglino, Lucio Frydman, Maayan Gal, Vittorio Bellotti, Bernhard Brutscher, Gennaro Esposito posted to folding by carlosjavierna on 2009-12-23 18:03:45 as
	Distinguishing between Smooth and Rough Free Energy Barriers in Protein Folding [My Copy] Biochemistry, Vol. 48, No. 49. (15 December 2009), pp. 11825-11830. by Stefano Gianni, Maurizio Brunori, Per Jemth, Mikael Oliveberg, Mingjie Zhang posted to folding by carlosjavierna on 2009-12-17 05:45:11 as along with 1 person samcho
	Common Folding Mechanism of a β-Hairpin Peptide via Non-native Turn Formation Revealed by Unbiased Molecular Dynamics Simulations [My Copy] Journal of the American Chemical Society, Vol. 131, No. 50. (23 December 2009), pp. 18147-18152. by Lipi Thukral, Jeremy C. Smith, Isabella Daidone posted to por-conseguir molecular-dynamics-simulations molecular-dynamics folding beta-hairpin by carlosjavierna on 2009-12-17 04:24:41 as
	Effects of a Mutation on the Folding Mechanism of a β-Hairpin [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 50. (17 December 2009), pp. 16184-16196. by Jarek Juraszek, Peter G. Bolhuis posted to replica-exchange-molecular-dynamics replica-exchange-md por-conseguir mutation general folding beta-hairpin by carlosjavierna on 2009-12-12 03:10:47 as
	Principles of protein folding--a perspective from simple exact models. [My Copy] Protein science : a publication of the Protein Society, Vol. 4, No. 4. (1 April 1995), pp. 561-602. by K. A. Dill, S. Bromberg, K. Yue, et al.K. M. Fiebig, D. P. Yee, P. D. Thomas, H. S. Chan posted to folding by carlosjavierna on 2009-11-13 07:31:17 as along with 3 people mijam sikorski iantunbridge
	Designing amino acid sequences to fold with good hydrophobic cores [My Copy] Protein engineering In Protein Eng., Vol. 8, No. 12. (1 December 1995), pp. 1205-1213. by Shaojian Sun, Rachel Brem, Hue S. Chan, Ken A. Dill posted to folding by carlosjavierna on 2009-11-13 07:16:22 as along with 1 person mijam
	Salt Dependence of an α-Helical Peptide Folding Energy Landscapes [My Copy] Biochemistry, Vol. 48, No. 45. (17 November 2009), pp. 10818-10826. by Kan Xiong, Eliana K. Asciutto, Jeffry D. Madura, Sanford A. Asher posted to folding by carlosjavierna on 2009-11-10 15:59:14 as
	Refolding of the integral membrane protein light-harvesting complex II monitored by pulse EPR [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18485-18490. by Christoph Dockter, Aleksei Volkov, Christian Bauer, et al.Yevhen Polyhach, ZoÃ© Joly-Lopez, Gunnar Jeschke, Harald Paulsen posted to folding by carlosjavierna on 2009-11-03 23:27:21 as along with 1 person jasonforse
	Backbone dynamics of TFE-induced native-like fold of region 4 of Escherichia coli RNA polymerase sigma<SUP><FONT SIZE='-1'>70</FONT></SUP> subunit [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Piotr Kaczka, Agnieszka Polkowska-Nowakowska, Krystyna Bolewska, Igor Zhukov, Jaros&lstrok;aw Pozna&nacute;ski, Kazimierz L. Wierzchowski posted to folding by carlosjavierna on 2009-10-23 08:37:31 as
	Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from <I>Streptococcus</I>. III. Dynamics of long-range hydrophobic interactions [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Agnieszka Lewandowska, Stanis&lstrok;aw O&lstrok;dziej, Adam Liwo, Harold A. Scheraga posted to folding by carlosjavierna on 2009-10-23 08:23:03 as
	Exploring the folding energy landscape of a series of designed consensus tetratricopeptide repeat proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17383-17388. by Yalda Javadi, Ewan R. G. Main posted to folding by carlosjavierna on 2009-10-18 18:05:51 as along with 1 person pansapiens
	Deciphering the Structural Basis That Guides the Oxidative Folding of Leech-derived Tryptase Inhibitor [My Copy] Journal of Biological Chemistry, Vol. 284, No. 51. (18 December 2009), pp. 35612-35620. by David Pantoja-Uceda, Joan L. Arolas, Francesc X. Aviles, Jorge Santoro, Salvador Ventura, Christian P. Sommerhoff posted to folding disulfide_bonds by carlosjavierna on 2009-10-10 20:13:18 as
	Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 13. (24 June 2003), pp. 7587-7592. by Jed W. Pitera, William Swope posted to trp-cage swope-william replica-exchange-molecular-dynamics pitera-jed-w folding by carlosjavierna on 2009-10-09 17:57:37 as along with 1 person onufriev
	Restriction versus guidance in protein structure prediction [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. 15302-15307. by Joseph A. Hegler, Joachim LÃ¤tzer, Amarda Shehu, Cecilia Clementi, Peter G. Wolynes posted to folding by carlosjavierna on 2009-09-22 05:21:33 as along with 2 people mkotlyar zwang
	Engineering antibody fragments to fold in the absence of disulfide bonds [My Copy] Protein Science, Vol. 18, No. 2. (2009), pp. 259-267. by Min J. Seo, Ki J. Jeong, Clinton E. Leysath, Andrew D. Ellington, Brent L. Iverson, George Georgiou posted to george-georgiou folding disulfide_bonds cysteine cys austin by carlosjavierna on 2009-09-15 20:05:40 as
	Accelerated folding in the weak hydrophobic environment of a chaperonin cavity: creation of an alternate fast folding pathway. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 36. (7 September 2004), pp. 13192-13197. by A. I. Jewett, A. Baumketner, J-E E. Shea posted to molecular-dynamics-simulations folding by carlosjavierna on 2009-09-07 03:15:37 as
	Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 5. (30 January 2007), pp. 1528-1533. by Kusai A. Merchant, Robert B. Best, John M. Louis, Irina V. Gopich, William A. Eaton posted to folding by carlosjavierna on 2009-08-07 18:19:46 as along with 5 people yanjiang quanwang joseolucha choonpeng toerst
	Random-coil behavior and the dimensions of chemically unfolded proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 34. (24 August 2004), pp. 12491-12496. by Jonathan E. Kohn, Ian S. Millett, Jaby Jacob, et al.Bojan Zagrovic, Thomas M. Dillon, Nikolina Cingel, Robin S. Dothager, Soenke Seifert, P. Thiyagarajan, Tobin R. Sosnick, M. Zahid Hasan, Vijay S. Pande, Ingo Ruczinski, Sebastian Doniach, Kevin W. Plaxco posted to folding by carlosjavierna on 2009-08-07 18:00:06 as along with 2 people rpetrenko yxue
	The denatured state (the other half of the folding equation) and its role in protein stability. [My Copy] The FASEB journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 10, No. 1. (1 January 1996), pp. 27-34. by D. Shortle posted to folding by carlosjavierna on 2009-08-07 17:57:06 as along with 2 people StephanieShumaker allmensch
	Effect of glycosylation on protein folding: A close look at thermodynamic stabilization [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 24. (17 June 2008), pp. 8256-8261. by Dalit Shental-Bechor, Yaakov Levy posted to folding glycosylation by carlosjavierna on 2009-08-07 16:06:41 as along with 2 people edws dsekaran
	Protein folding under confinement: A role for solvent [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 25. (19 June 2007), pp. 10430-10434. by Del Lucent, V. Vishal, Vijay S. Pande posted to folding by carlosjavierna on 2009-08-07 15:45:14 as along with 4 people melting cactus cjeans rph
	Barrierless evolution of structure during the submillisecond refolding reaction of a small protein [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 23. (10 June 2008), pp. 7998-8003. by Kalyan K. Sinha, Jayant B. Udgaonkar posted to folding by carlosjavierna on 2009-08-07 15:43:09 as
	Characterization of protein-folding pathways by reduced-space modeling. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 30. (24 July 2007), pp. 12330-12335. by Sebastian Kmiecik, Andrzej Kolinski posted to folding by carlosjavierna on 2009-08-07 15:34:14 as along with 6 people saunders mijam wouterboomsma mkurc sekmi nh
	A backbone-based theory of protein folding [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 45. (7 November 2006), pp. 16623-16633. by George D. Rose, Patrick J. Fleming, Jayanth R. Banavar, Amos Maritan posted to folding by carlosjavierna on 2009-08-07 15:16:02 as along with 7 people flbarroso edws dkoveal thaliana j3xucite choonpeng marck
	Folding mechanism of the C-terminal domain of nucleophosmin: residual structure in the denatured state and its pathophysiological significance [My Copy] FASEB J., Vol. 23, No. 8. (1 August 2009), pp. 2360-2365. by Flavio Scaloni, Stefano Gianni, Luca Federici, Brunangelo Falini, Maurizio Brunori posted to folding by carlosjavierna on 2009-08-07 15:15:01 as
	Folding transitions in calpain activator peptides studied by solution NMR spectroscopy [My Copy] Journal of Peptide Science, Vol. 15, No. 6. (2009), pp. 404-410. by Orsolya Toke, Zoltán Bánóczi, Gábor Tárkányi, Péter Friedrich, Ferenc Hudecz posted to folding by carlosjavierna on 2009-08-07 05:00:43 as
	Glycerol-induced folding of unstructured disulfide-deficient lysozyme into a native-like conformation [My Copy] Biopolymers, Vol. 91, No. 8. (2009), pp. 665-675. by Keiko Sakamoto, Ken-Ichi Hirai, Yoshiaki Kitamura, et al.Kouta Yamazaki, Mitsunobu Yusa, Naoki Tokunaga, Gakuji Doi, Yasuo Noda, Hideki Tachibana, Shin-Ichi Segawa posted to cys cysteine folding by carlosjavierna on 2009-08-05 06:06:06 as
	Electrostatic Interactions Contribute to the Folded-back Conformation of Wild Type Human Factor H [My Copy] Journal of Molecular Biology, Vol. 391, No. 1. (07 August 2009), pp. 98-118. by Azubuike I. Okemefuna, Ruodan Nan, Jayesh Gor, Stephen J. Perkins posted to electrostatic-interactions folding by carlosjavierna on 2009-07-20 04:11:56 as
	Yeast Phosducin-Like Protein 2 Acts as a Stimulatory Co-Factor for the Folding of Actin by the Chaperonin CCT via a Ternary Complex [My Copy] Journal of Molecular Biology, Vol. 391, No. 1. (07 August 2009), pp. 192-206. by Elizabeth A. Mccormack, Gabriel M. Altschuler, Carien Dekker, Heather Filmore, Keith R. Willison posted to folding by carlosjavierna on 2009-07-20 04:09:22 as
	Statistical distribution of hydrophobic residues along the length of protein chains. Implications for protein folding and evolution. [My Copy] Biophysical journal, Vol. 57, No. 4. (April 1990), pp. 911-921. by S. H. White, R. E. Jacobs posted to folding hydrophobic residue by carlosjavierna on 2009-07-17 03:01:03 as
	Pro-IL-1beta shares a core region of stability as compared with mature IL-1beta while maintaining a distinctly different configurational landscape: A comparative hydrogen/deuterium exchange mass spectrometry (DXMS) study [My Copy] J. Biol. Chem. (10 July 2009), M109.027375. by Kendra L. Hailey, Sheng Li, Mette D. Andersen, Melinda Roy, Virgil L. Woods, Patricia A. Jennings posted to folding by carlosjavierna on 2009-07-16 00:16:49 as
	Phosphorylation of eukaryotic translation initiation factor 2alpha coordinates rRNA transcription and translation inhibition during endoplasmic reticulum stress. [My Copy] Molecular and cellular biology, Vol. 29, No. 15. (1 August 2009), pp. 4295-4307. by Jenny B. DuRose, Donalyn Scheuner, Randal J. Kaufman, Lawrence I. Rothblum, Maho Niwa posted to folding phosphorilation by carlosjavierna on 2009-07-14 19:24:09 as along with 1 person guhjy
	Evaluating β-turn mimics as β-sheet folding nucleators [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 11067-11072. by Amelia A. Fuller, Deguo Du, Feng Liu, et al.Jennifer E. Davoren, Gira Bhabha, Gerard Kroon, David A. Case, H. Jane Dyson, Evan T. Powers, Peter Wipf, Martin Gruebele, Jeffery W. Kelly posted to beta-sheet beta-turn case folding nucleator by carlosjavierna on 2009-07-11 20:30:44 as
	The Folding Mechanism of BBL: Plasticity of Transition-State Structure Observed within an Ultrafast Folding Protein Family [My Copy] Journal of Molecular Biology, Vol. 390, No. 5. (31 July 2009), pp. 1060-1073. by Hannes Neuweiler, Timothy D. Sharpe, Trevor J. Rutherford, et al.Christopher M. Johnson, Mark D. Allen, Neil Ferguson, Alan R. Fersht posted to folding by carlosjavierna on 2009-07-11 14:18:28 as
	Different Members of a Simple Three-Helix Bundle Protein Family Have Very Different Folding Rate Constants and Fold by Different Mechanisms [My Copy] Journal of Molecular Biology, Vol. 390, No. 5. (31 July 2009), pp. 1074-1085. by Beth G. Wensley, Martina Gärtner, Wan X. Choo, Sarah Batey, Jane Clarke posted to folding folding-rates by carlosjavierna on 2009-07-11 14:16:54 as
	Amphipol-Assisted in Vitro Folding of G Protein-Coupled Receptors [My Copy] Biochemistry, Vol. 48, No. 27. (14 July 2009), pp. 6516-6521. by Tassadite Dahmane, Marjorie Damian, Sophie Mary, Jean-Luc Popot, Jean-Louis Banères posted to folding by carlosjavierna on 2009-07-08 16:29:45 as
	Metal-activated histidine carbon donor hydrogen bonds contribute to metalloprotein folding and function [My Copy] Journal of Inorganic Biochemistry, Vol. 103, No. 7. (14 July 2009), pp. 1054-1060. by Ann Schmiedekamp, Vikas Nanda posted to folding his histidine hydrogen-bonds by carlosjavierna on 2009-07-07 04:09:57 as
	Solvent Friction Changes the Folding Pathway of the Tryptophan Zipper TZ2 [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 538-546. by Ranjani Narayanan, Leslie Pelakh, Stephen J. Hagen posted to folding by carlosjavierna on 2009-07-07 03:59:25 as
	pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1761-1767. by Anna Lobley, Michael I. Sadowski, David T. Jones posted to folding by carlosjavierna on 2009-07-02 20:12:04 as along with 1 person and 1 group ollieredfernwork Orengo Group Journal Picks
	R992C (p.R1192C) Substitution in Collagen II Alters the Structure of Mutant Molecules and Induces the Unfolded Protein Response [My Copy] Journal of Molecular Biology, Vol. 390, No. 2. (10 July 2009), pp. 306-318. by Hye J. Chung, Deborah A. Jensen, Katarzyna Gawron, Andrzej Steplewski, Andrzej Fertala posted to folding by carlosjavierna on 2009-06-14 02:15:35 as
	Refolding and purification of histidine-tagged protein by artificial chaperone-assisted metal affinity chromatography [My Copy] Journal of Chromatography A (13 May 2009) by Xiao-Yan Dong, Li-Jun Chen, Yan Sun posted to folding his histidine by carlosjavierna on 2009-06-08 21:52:47 as
	Stabilization of two smallest possible diastereomeric β-hairpins in a water soluble tetrapeptide containing non-coded α-amino isobutyric acid (Aib) and m-amino benzoic acid [My Copy] Journal of Molecular Structure, Vol. 928, No. 1-3. (30 June 2009), pp. 138-143. by Anita Dutt, Arpita Dutta, Sudeshna Kar, Pradyot Koley, Michael G. Drew, Animesh Pramanik posted to folding by carlosjavierna on 2009-05-31 15:12:36 as
	Probing the Folding Transition State Structure of the Villin Headpiece Subdomain via Side Chain and Backbone Mutagenesis [My Copy] Journal of the American Chemical Society, Vol. 131, No. 21. (3 June 2009), pp. 7470-7476. by Michelle R. Bunagan, Jianmin Gao, Jeffery W. Kelly, Feng Gai posted to folding by carlosjavierna on 2009-05-28 14:40:06 as
	Catalytic Improvement and Evolution of Atrazine Chlorohydrolase [My Copy] Appl. Environ. Microbiol., Vol. 75, No. 7. (1 April 2009), pp. 2184-2191. by Colin Scott, Colin J. Jackson, Chris W. Coppin, et al.Roslyn G. Mourant, Margaret E. Hilton, Tara D. Sutherland, Robyn J. Russell, John G. Oakeshott posted to folding by carlosjavierna on 2009-03-25 22:45:38 as
	The Unfolded State of the C-terminal Domain of the Ribosomal Protein L9 Contains Both Native and Non-Native Structure [My Copy] Biochemistry, Vol. 0, No. ja. (0000) by Bing Shan, David Eliezer, Daniel Raleigh posted to folding by carlosjavierna on 2009-03-23 19:06:51 as
	Flory Theory of the Folding of Designed RNA Molecules† [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 12. (26 March 2009), pp. 3880-3893. by David Schwab, Robijn F. Bruinsma posted to folding by carlosjavierna on 2009-03-22 17:57:06 as
	Exploring the Folding Free Energy Landscape of Insulin Using Bias Exchange Metadynamics [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 11. (19 March 2009), pp. 3556-3564. by Nevena Todorova, Fabrizio Marinelli, Stefano Piana, Irene Yarovsky posted to folding modeling molecular-modeling by carlosjavierna on 2009-03-15 18:19:54 as
	Thermodynamics of Melittin Binding to Lipid Bilayers. Aggregation/Pore Formation. [My Copy] Biochemistry, Vol. 0, No. ja. (0000) by Gabriela Klocek, Therese Schulthess, Yechiel Shai, Joachim Seelig posted to alpha-helix chemistry coil folding host-guest thermodynamics by carlosjavierna on 2009-02-26 03:35:55 as along with 3 people and 1 group willard agrossfield sobolevnrm baker-group
	Amide I′−II′ 2D IR Spectroscopy Provides Enhanced Protein Secondary Structural Sensitivity [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Lauren P. Deflores, Ziad Ganim, Rebecca A. Nicodemus, Andrei Tokmakoff posted to beta-sheet folding by carlosjavierna on 2009-02-24 16:24:24 as
	Protein Folding, Protein Collapse, and Tanford’s Transfer Model: Lessons from Single-Molecule FRET [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Guy Ziv, Gilad Haran posted to folding by carlosjavierna on 2009-02-24 16:21:12 as along with 1 person jorgelamboy

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review	101
arg	70
folding	61
arginine	61
molecular-dynamics-simulations	59
molecular-dynamics	56
proteins	55
molecular-recognition	46
general	44
por-conseguir	42
phosphorilation	36
crystal-structure	34
molecular-modeling	34
tyr	32
cys	31
lys	29
beta-lactamase	28
ser	28
cysteine	28
mutagenesis	26
pro	26
tyrosine	26
his	25
proline	23
lysine	22
serine	22
amino-acids	22
thr	22
conformational-change	21
phosphorylation	21
host-guest-chemistry	21
gly	21
peptides	20
disorder	20
alpha-helix	20
histidine	19
threonine	19
phe	18
docking	18
ala	18
trp	17
protein	16
x-ray	16
glycine	16
qmmm	16
alanine	15
hydrogen-bonds	15
enantiomers	15
leu	14
mini-review	14
beta-sheet	13
conformational	12
tryptophan	12
modeling	12
cyclodextrin	12
md	12
qm-mm	12
proteinas	11
qsar	11
gln	10
leucine	10
beta-cyclodextrin	10
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peptide	8
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val	7
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helix	7
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ile	6
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residue-analysis	5
sar	5
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potential-energy-surface	4
methionine	4
chaperone	4
replica-exchange-molecular-dynamics	4
force-fields	4
inclusion-complex	4
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ubiquitination	4
acetylation	4
force-field	4
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honig-barry-h	4
tripeptide	4
residue	4
disulfide_bonds	4
hiv	4
water	4
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dna-carbon-nanotube	1
hiv-1	1
hydrogen-bondsdensity-functional-theory	1
crystal_structure	1
charmm	1
mutant	1
basis-sets	1
phosphoserine	1
nucleator	1
homology	1
free-energy-differences	1
refolding	1
porins	1
aqvist	1
dynamic	1
dillka	1
allosteric	1
gly-gly	1
pande-vijay-s	1
abinitio-molecular-dynamics	1
enantiomeric-excess	1
thermodynamic-studies	1
george-georgiou	1
side-chain-amino-acids	1
extended-spectrum-beta-lactamase	1
tuckermanme	1
coarse-grained-molecular-dynamics	1
mining-minima-method	1
polypeptides	1
chiral-separation	1
antibiotic_resistance	1
kinetics	1
phenilalanine	1
dipeptido	1
swope-william	1
drug-receptor-interactions	1
decarboxilation	1
carlssonj	1
pitera-jed-w	1
substrate-recognition	1
normal-mode-analysis	1
conformational_change	1
analysis	1
succination	1
superfamilies	1
mm-gbsa	1
ethanol	1
trp-zipper	1
donaldgtruhlar	1
inhibitors	1
metalloenzymes	1
computer-imulations	1
remd	1

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