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caseybrown's eqtl [66 articles]

Recent papers added to caseybrown's library classified by the tag eqtl. You can also see everyone's eqtl.
  • Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation
    PLoS Biology, Vol. 6, No. 9. (1 September 2008), e238.
    by Joseph M Gonzales, Jigar J Patel, Napawan Ponmee, Lei Jiang, Asako Tan, Steven P Maher, Stefan Wuchty, Pradipsinh K Rathod, Michael T Ferdig
    posted to malaria eqtl by caseybrown on 2008-10-08 03:31:40 as ** along with 1 person djkt
  • Considering dependence among genes and markers for false discovery control in eQTL mapping.
    Bioinformatics (Oxford, England) (17 July 2008)
    by Liang Chen, Tiejun Tong, Hongyu Zhao
    posted to eqtl by caseybrown on 2008-09-24 02:54:09 as ** along with 3 people djkt jyuh orzenil
  • Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes
    Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1208-1216.
    by Harald H Goring, Joanne E Curran, Matthew P Johnson, Thomas D Dyer, Jac Charlesworth, Shelley A Cole, Jeremy B Jowett, Lawrence J Abraham, David L Rainwater, Anthony G Comuzzie, Michael C Mahaney, Laura Almasy, Jean W Maccluer, Ahmed H Kissebah, Gregory R Collier, Eric K Moses, John Blangero
    posted to eqtl by caseybrown on 2008-09-11 03:25:45 as read along with 4 people vplagnol giovanni jo_davies jyuh
  • Genetics of gene expression surveyed in maize, mouse and man.
    Nature, Vol. 422, No. 6929. (20 March 2003), pp. 297-302.
    by EE Schadt, SA Monks, TA Drake, AJ Lusis, N Che, V Colinayo, TG Ruff, SB Milligan, JR Lamb, G Cavet, PS Linsley, M Mao, RB Stoughton, SH Friend
    posted to eqtl maize mouse by caseybrown on 2008-08-18 02:24:42 as read along with 7 people and 1 group adepace koller lp2 hms jo_davies parkcc mcgannd EisenLab
  • Cis-acting expression quantitative trait loci in mice
    Genome Research, Vol. 15, No. 5. (1 May 2005), pp. 681-691.
    by Sudheer Doss, Eric E Schadt, Thomas A Drake, Aldons J Lusis
    posted to eqtl mouse by caseybrown on 2008-08-18 02:19:38 as read
  • eQTL Viewer: visualizing how sequence variation affects genome-wide transcription
    BMC Bioinformatics, Vol. 8 (09 January 2007), 7.
    by Wei Zou, David L Aylor, Zhao-Bang Zeng
    posted to eqtl visualization by caseybrown on 2008-08-18 00:07:50 as ** along with 2 people jyuh Ayest
  • SNPs matter: impact on detection of differential expression
    Nat Meth, Vol. 4, No. 9. (2007), pp. 679-680.
    by Nicole A Walter, Shannon K Mcweeney, Sandra T Peters, John K Belknap, Robert Hitzemann, Kari J Buck
    posted to eqtl expression_array polymorphism by caseybrown on 2008-08-17 23:49:48 as ** along with 1 person and 1 group hms Bioinformatics
  • Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423.
    by David Benovoy, Tony Kwan, Jacek Majewski
    posted to cisreg eqtl expression_array polymorphism transcription by caseybrown on 2008-08-16 15:37:23 as read along with 3 people waszak jfr GeeSharpMinor
  • High-Resolution Mapping of Gene Expression Using Association in an Outbred Mouse Stock
    PLoS Genet, Vol. 4, No. 8. (2008), e1000149.
    by Anatole Ghazalpour, Sudheer Doss, Hyun Kang, Charles Farber, Ping-Zi Wen, Alec Brozell, Ruth Castellanos, Eleazar Eskin, Desmond J Smith, Thomas A Drake, Aldons J Lusis
    posted to eqtl liver mouse by caseybrown on 2008-08-08 14:12:39 as ** along with 2 people natstreet ptrobajo
  • How replicable are mRNA expression QTL?
    Mammalian Genome, Vol. 17, No. 6. (1 June 2006), pp. 643-656.
    by Jeremy Peirce, Hongqiang Li, Jintao Wang, Kenneth Manly, Robert Hitzemann, John Belknap, Glenn Rosen, Shirlean Goodwin, Thomas Sutter, Robert Williams, Lu Lu
    posted to eqtl qtl_replication by caseybrown on 2008-07-25 23:17:33 as **
  • Sequence polymorphisms cause many false cis eQTLs.
    PLoS ONE, Vol. 2 (2007)
    by R Alberts, P Terpstra, Y Li, R Breitling, JP Nap, RC Jansen
    posted to eqtl polymorphism by caseybrown on 2008-07-25 23:14:18 as ** along with 2 people qfwills natstreet
  • Gene expression quantitative trait locus analysis of 16000 barley genes reveals a complex pattern of genome-wide transcriptional regulation
    The Plant Journal, Vol. 53, No. 1. (January 2008), pp. 90-101.
    by Potokina, Elena, Druka, Arnis, Luo, Zewei, Wise, Roger, Waugh, Robbie, Kearsey, Mike
    posted to barley eqtl by caseybrown on 2008-07-25 23:04:09 as **
  • Summary of contributions to GAW15 Group 16: Processing/normalization of expression traits
    Genetic Epidemiology, Vol. 31, No. S1. (2007), pp. S132-S138.
    by Aurélie Labbe, Jeanette Mcclintick, Maria Martinez, On
    posted to eqtl expression_array method by caseybrown on 2008-07-25 23:01:44 as **
  • Rapid and robust association mapping of expression quantitative trait loci
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Alex Lam, Michael Schouten, Yurii Aulchenko, Chris Haley, Dirk J de Koning
    posted to eqtl by caseybrown on 2008-07-25 23:00:25 as **
  • A method dealing with a large number of correlated traits in a linkage genome scan
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Tao Feng, Shuanglin Zhang, Qiuying Sha
    posted to eqtl multivariate by caseybrown on 2008-07-25 22:54:33 as **
  • Linkage analysis using principal components of gene expression data
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Elizabeth Atkinson, Brooke Fridley, Ellen Goode, Shannon Mcdonnell, Wen L Mares, Kari Rabe, Zhifu Sun, Susan Slager, Mariza de Andrade
    posted to eqtl multivariate by caseybrown on 2008-07-25 22:53:31 as **
  • Linkage and association analyses of principal components in expression data
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Anthony Hinrichs, Robert Culverhouse, Carol Jin, Brian Suarez
    posted to eqtl multivariate by caseybrown on 2008-07-25 22:50:47 as **
  • Impact of gene expression data pre-processing on expression quantitative trait locus mapping
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Aurelie Labbe, Marie P Roth, Pierre H Carmichael, Maria Martinez
    posted to eqtl expression_array by caseybrown on 2008-07-25 22:44:56 as ** along with 1 person csgillespie
  • Revealing the architecture of gene regulation: the promise of eQTL studies
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yoav Gilad, Scott A Rifkin, Jonathan K Pritchard
    posted to eqtl review by caseybrown on 2008-07-25 22:32:28 as ** along with 4 people djkt jyuh tmmurali orzenil
  • Genetical genomics: use all data
    BMC Genomics, Vol. 8 (12 March 2007), 69.
    by Miguel Perez-Enciso, Jose R Quevedo, Antonio Bahamonde
    posted to eqtl by caseybrown on 2008-07-25 21:34:06 as ** along with 5 people ccots Ayest qfwills steff83 jo_davies
  • Genetic complexity and quantitative trait loci mapping of yeast morphological traits.
    PLoS Genet, Vol. 3, No. 2. (23 February 2007)
    by S Nogami, Y Ohya, G Yvert
    posted to eqtl qtl yeast by caseybrown on 2008-07-25 21:26:56 as ** along with 2 people and 1 group dpollard jyuh EisenLab
  • Genetic analysis of genome-wide variation in human gene expression.
    Nature, Vol. 430, No. 7001. (12 August 2004), pp. 743-747.
    by M Morley, CM Molony, TM Weber, JL Devlin, KG Ewens, RS Spielman, VG Cheung
    posted to eqtl by caseybrown on 2008-07-25 21:13:41 as ** along with 9 people and 1 group snuppepuppan kentsis RMGraze adepace qfwills vplagnol nagendraproj jo_davies mimulus_99 EisenLab
  • Causal inference of regulator-target pairs by gene mapping of expression phenotypes
    BMC Genomics, Vol. 7, No. 1. (2006)
    by David Kulp, Manjunatha Jagalur
    posted to eqtl by caseybrown on 2008-07-25 21:02:48 as **
  • Trait-trait dynamic interaction: 2D-trait eQTL mapping for genetic variation study
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Wei Sun, Shinsheng Yuan, Ker C Li
    posted to eqtl multivariate yeast by caseybrown on 2008-07-25 19:43:49 as ** along with 4 people and 1 group natstreet ddunbar stajich jyuh Berkeley Mycology
  • Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach.
    Am J Hum Genet, Vol. 81, No. 3. (September 2007), pp. 427-437.
    by RS Huang, S Duan, SJ Shukla, EO Kistner, TA Clark, TX Chen, AC Schweitzer, JE Blume, ME Dolan
    posted to eqtl pharmacogenetics by caseybrown on 2008-07-25 19:39:23 as read along with 2 people nicholso jyuh
  • A genome-wide association study identifies protein quantitative trait loci (pQTLs).
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by D Melzer, JR Perry, D Hernandez, AM Corsi, K Stevens, I Rafferty, F Lauretani, A Murray, JR Gibbs, G Paolisso, S Rafiq, J Simon-Sanchez, H Lango, S Scholz, MN Weedon, S Arepalli, N Rice, N Washecka, A Hurst, A Britton, W Henley, J van de Leemput, R Li, AB Newman, G Tranah, T Harris, V Panicker, C Dayan, A Bennett, MI McCarthy, A Ruokonen, MR Jarvelin, J Guralnik, S Bandinelli, TM Frayling, A Singleton, L Ferrucci
    posted to eqtl metabolism by caseybrown on 2008-07-25 19:10:17 as ** along with 3 people natstreet jyuh srp33
  • A Statistical Framework for Expression Quantitative Trait Loci (eQTL) Mapping
    Genetics (29 July 2007), genetics.107.071407.
    by Meng Chen, Christina Kendziorski
    posted to eqtl by caseybrown on 2008-07-22 16:11:25 as ** along with 2 people natstreet jo_davies
  • Accounting for Non-Genetic Factors Improves the Power of eQTL Studies
    RECOMB (2008)
    by Oliver Stegle, Anitha Kanna, Richard Durbin, John Winn
    posted to eqtl by caseybrown on 2008-07-17 13:40:05 as read
  • Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000109.
    by Ke Hao, Eric E Schadt, John D Storey
    posted to eqtl genotyping gwas by caseybrown on 2008-06-30 01:42:03 as ** along with 4 people brianb Stew balicea jyuh
  • A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs
    PLoS Genet, Vol. 4, No. 4. (11 April 2008), e1000052.
    by Youssef Idaghdour, John D Storey, Sami J Jadallah, Greg Gibson
    posted to eqtl gxe by caseybrown on 2008-06-19 18:44:35 as read along with 1 person misonneh
  • Gene set enrichment in eQTL data identifies novel annotations and pathway regulators.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by C Wu, DL Delano, N Mitro, SV Su, J Janes, P McClurg, S Batalov, GL Welch, J Zhang, AP Orth, JR Walker, RJ Glynne, MP Cooke, JS Takahashi, K Shimomura, A Kohsaka, J Bass, E Saez, T Wiltshire, AI Su
    posted to eqtl network by caseybrown on 2008-06-17 21:30:12 as ** along with 2 people thomaskelder jyuh
  • The influence of genetic variation on gene expression
    Genome Res., Vol. 17, No. 12. (1 December 2007), pp. 1707-1716.
    by Rohan B Williams, Eva K Chan, Mark J Cowley, Peter F Little
    posted to eqtl by caseybrown on 2008-06-12 21:30:04 as read along with 6 people balicea giovanni ggorjan lp2 xingxu dmachugh
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
    posted to eqtl liver metabolism by caseybrown on 2008-05-27 16:23:37 as read along with 9 people semrich ddunbar vplagnol Schmidtc ptrobajo Jonesy jyuh inesdesantiago hdopazo
  • Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis
    BMC Bioinformatics, Vol. 9 (20 May 2008), 244.
    by Shameek Biswas, John D Storey, Joshua M Akey
    posted to eqtl method by caseybrown on 2008-05-27 15:02:38 as read along with 1 person jyuh
  • Distribution and functional impact of DNA copy number variation in the rat
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 538-545.
    by Victor Guryev, Kathrin Saar, Tatjana Adamovic, Mark Verheul, Sebastiaan A van Heesch, Stuart Cook, Michal Pravenec, Timothy Aitman, Howard Jacob, James D Shull, Norbert Hubner, Edwin Cuppen
    posted to cnv eqtl rat by caseybrown on 2008-04-28 22:53:46 as read along with 1 person booker
  • Statistical Power of Expression Quantitative Trait Loci for Mapping of Complex Trait Loci in Natural Populations
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2201-2216.
    by Paul Schliekelman
    posted to eqtl by caseybrown on 2008-04-26 14:29:50 as ** along with 2 people jyuh lp2
  • Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 343-351.
    by CR Landry, J Oh, DL Hartl, D Cavalieri
    posted to eqtl gxe yeast by caseybrown on 2008-04-15 20:02:35 as ** along with 3 people and 1 group dpollard aubinhon klo EisenLab
  • The landscape of genetic complexity across 5,700 gene expression traits in yeast
    PNAS, Vol. 102, No. 5. (1 February 2005), pp. 1572-1577.
    by Rachel B Brem, Leonid Kruglyak
    posted to eqtl genetic_interaction yeast by caseybrown on 2008-04-15 20:01:15 as read along with 5 people dipenps qfwills djkt lp2 jo_davies
  • Gene–Environment Interaction in Yeast Gene Expression
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e83.
    by Erin N Smith, Leonid Kruglyak
    posted to cisreg eqtl yeast by caseybrown on 2008-04-15 16:17:59 as read along with 1 person dbensasson
  • An integrative genomics approach to infer causal associations between gene expression and disease
    Nature Genetics, Vol. 37, No. 7. (19 June 2005), pp. 710-717.
    by Eric E Schadt, John Lamb, Xia Yang, Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Y Lum, Amy Leonardson, Rolf Thieringer, Joseph M Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F Kash, Thomas A Drake, Alan Sachs, Aldons J Lusis
    posted to eqtl network by caseybrown on 2008-03-30 23:04:55 as read along with 12 people and 1 group pcahan1 tuck brant ckehl koller giovanni lp2 dejori natstreet jo_davies chrisamiller mitko GeschwindLab
  • Elucidating the murine brain transcriptional network in a segregating mouse population to identify core functional modules for obesity and diabetes.
    J Neurochem (15 March 2006)
    by Pek Yee Y Lum, Yanqing Chen, Jun Zhu, John Lamb, Shlomo Melmed, Susanna Wang, Tom A A Drake, Aldons J J Lusis, Eric E E Schadt
    posted to diabetes eqtl metabolism mouse network by caseybrown on 2008-03-30 22:50:22 as ** along with 1 person ccots
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to diabetes eqtl liver metabolism mouse network by caseybrown on 2008-03-30 18:41:47 as read along with 14 people and 1 group brianb jbsaltz djkt raiyar lp2 jo_davies shikin ptrobajo jyuh echinotrix natstreet sanchezbuelna jfr chrisamiller GeneGo
  • Genetics of gene expression and its effect on disease
    Nature (16 March 2008)
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to diabetes eqtl liver metabolism network by caseybrown on 2008-03-30 18:40:41 as read along with 13 people and 1 group brianb djkt lp2 jo_davies shikin ptrobajo vplagnol smbe2008 echinotrix natstreet sanchezbuelna jyuh Borelli GeneGo
  • eQED: an efficient method for interpreting eQTL associations using protein networks
    Mol Syst Biol, Vol. 4 (4 March 2008)
    by Silpa Suthram, Andreas Beyer, Richard M Karp, Yonina Eldar, Trey Ideker
    posted to eqtl method network by caseybrown on 2008-03-29 13:40:45 as read along with 7 people zwang biomcgary jo_davies jyuh thomaskelder ptrobajo APRegier
  • Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 421-429.
    by Christopher C Park, Sangtae Ahn, Joshua S Bloom, Andy Lin, Richard T Wang, Tongtong Wu, Aswin Sekar, Arshad H Khan, Christine J Farr, Aldons J Lusis, Richard M Leahy, Kenneth Lange, Desmond J Smith
    posted to cisreg eqtl mouse transcription by caseybrown on 2008-03-27 15:20:09 as read along with 1 person parkcc
  • Genetic and Genomic Analysis of a Fat Mass Trait with Complex Inheritance Reveals Marked Sex Specificity
    PLoS Genetics, Vol. 2, No. 2. (3 February 2006), e15.
    by Susanna Wang, Nadir Yehya1, Eric E Schadt, Hui Wang, Thomas A Drake, Aldons J Lusis
    posted to diabetes eqtl metabolism mouse by caseybrown on 2008-03-24 14:33:36 as **
  • Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
    Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 225-232.
    by Leonid Bystrykh, Ellen Weersing, Bert Dontje, Sue Sutton, Mathew T Pletcher, Tim Wiltshire, Andrew I Su, Edo Vellenga, Jintao Wang, Kenneth F Manly, Lu Lu, Elissa J Chesler, Rudi Alberts, Ritsert C Jansen, Robert W Williams, Michael P Cooke, Gerald d de Haan
    posted to eqtl mouse by caseybrown on 2008-03-24 13:14:04 as read along with 4 people snuppepuppan kentsis fisherp hplatero
  • Harnessing naturally randomized transcription to infer regulatory relationships among genes
    Genome Biology, Vol. 8 (11 October 2007), R219.
    by Lin S Chen, Frank Emmert-Streib, John D Storey
    posted to cisreg eqtl expression_array network by caseybrown on 2008-03-18 22:10:59 as read
  • Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease
    Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 243-253.
    by Norbert Hubner, Caroline A Wallace, Heike Zimdahl, Enrico Petretto, Herbert Schulz, Fiona Maciver, Michael Mueller, Oliver Hummel, Jan Monti, Vaclav Zidek, Alena Musilova, Vladimir Kren, Helen Causton, Laurence Game, Gabriele Born, Sabine Schmidt, Anita Müller, Stuart A Cook, Theodore W Kurtz, John Whittaker, Michal Pravenec, Timothy J Aitman
    posted to cisreg eqtl metabolism by caseybrown on 2008-03-18 16:15:54 as ** along with 6 people snuppepuppan kentsis samal neveaire thomaskelder jo_davies
  • Genetic regulation of gene expression during shoot development in Arabidopsis.
    Genetics, Vol. 172, No. 2. (February 2006), pp. 1155-1164.
    by R DeCook, S Lall, D Nettleton, SH Howell
    posted to arabidopsis cisreg eqtl by caseybrown on 2008-03-18 16:13:19 as ** along with 1 person fisherp
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