caseybrown's sequencing [62 articles] Export

Recent papers added to caseybrown's library classified by the tag sequencing. You can also see everyone's sequencing.

	The antisense transcriptomes of human cells. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1855-1857. by Yiping He, Bert Vogelstein, Victor E. Velculescu, Nickolas Papadopoulos, Kenneth W. Kinzler posted to 4th_floor_jc antisense sequencing short_read_analysis transcription by caseybrown on 2009-01-16 21:11:09 as along with 20 people and 2 groups rsaito guhjy gdb maximilianh xingxu hagechouchin443 jfr fhalbrit inesdesantiago skoch3 Zephyrus djkt strands balicea shikin coela ealloza diaz0058 gfliustu jbhiatt Koch_Lab Roswell Cancer Crosstalk
	Molecular determinants of the response of glioblastomas to EGFR kinase inhibitors. [My Copy] N Engl J Med, Vol. 353, No. 19. (10 November 2005), pp. 2012-2024. by I. K. Mellinghoff, M. Y. Wang, I. Vivanco, et al.D. A. Haas-Kogan, S. Zhu, E. Q. Dia, K. V. Lu, K. Yoshimoto, J. H. Huang, D. J. Chute, B. L. Riggs, S. Horvath, L. M. Liau, W. K. Cavenee, P. N. Rao, R. Beroukhim, T. C. Peck, J. C. Lee, W. R. Sellers, D. Stokoe, M. Prados, T. F. Cloughesy, C. L. Sawyers, P. S. Mischel posted to cancer glioblastoma sequencing by caseybrown on 2009-01-09 16:48:38 as along with 3 people and 1 group jackjackjjj giovanni pjasper GeschwindLab
	Genetic pathways to glioblastoma: a population-based study. [My Copy] Cancer research, Vol. 64, No. 19. (1 October 2004), pp. 6892-6899. by Hiroko Ohgaki, Pierre Dessen, Benjamin Jourde, et al.Sonja Horstmann, Tomofumi Nishikawa, Pier-Luigi L. Di Patre, Christoph Burkhard, Danielle Schüler, Nicole M. Probst-Hensch, Paulo César C. Maiorka, Nathalie Baeza, Paola Pisani, Yasuhiro Yonekawa, M. Gazi Yasargil, Urs M. Lütolf, Paul Kleihues posted to cancer glioblastoma sequencing by caseybrown on 2009-01-09 16:47:26 as along with 3 people smuekusc aezrin srp33
	PIK3CA Gene Mutations in Pediatric and Adult Glioblastoma Multiforme [My Copy] Mol Cancer Res, Vol. 4, No. 10. (1 October 2006), pp. 709-714. by Gary L. Gallia, Vikki Rand, I-Mei Siu, et al.Charles G. Eberhart, David C. James, Suely K. Marie, Sueli M. Oba-Shinjo, Carlos G. Carlotti, Otavia L. Caballero, Andrew J. Simpson, Malcolm V. Brock, Pierre P. Massion, Benjamin S. Carson, Gregory J. Riggins posted to cancer glioblastoma sequencing by caseybrown on 2009-01-09 16:43:38 as
	Sequence survey of receptor tyrosine kinases reveals mutations in glioblastomas [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 40. (4 October 2005), pp. 14344-14349. by Vikki Rand, Jiaqi Huang, Tim Stockwell, et al.Steve Ferriera, Oleksandr Buzko, Samuel Levy, Dana Busam, Kelvin Li, Jennifer B. Edwards, Charles Eberhart, Kathleen M. Murphy, Alexia Tsiamouri, Karen Beeson, Andrew J. Simpson, Craig J. Venter, Gregory J. Riggins, Robert L. Strausberg posted to glioblastoma sequencing by caseybrown on 2009-01-09 16:42:50 as
	An integrated genomic analysis of human glioblastoma multiforme. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5897. (26 September 2008), pp. 1807-1812. by D. Williams Parsons, Siân Jones, Xiaosong Zhang, et al.Jimmy Cheng-Ho C. Lin, Rebecca J. Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, I-Mei M. Siu, Gary L. Gallia, Alessandro Olivi, Roger McLendon, B. Ahmed Rasheed, Stephen Keir, Tatiana Nikolskaya, Yuri Nikolsky, Dana A. Busam, Hanna Tekleab, Luis A. Diaz, James Hartigan, Doug R. Smith, Robert L. Strausberg, Suely Kazue Nagahashi K. Marie, Sueli Mieko Oba M. Shinjo, Hai Yan, Gregory J. Riggins, Darell D. Bigner, Rachel Karchin, Nick Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E. Velculescu, Kenneth W. Kinzler posted to cancer glioblastoma sequencing by caseybrown on 2009-01-09 16:41:26 as along with 15 people and 2 groups VGreiff stubrown Zephyrus zufar dolchan frohike wimufi jfr srp33 renatomilani brianb shikin aheilbut songpku giovenko GeneGo Roswell Cancer Crosstalk
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to chip sequencing short_read_analysis by caseybrown on 2008-12-05 17:20:19 as along with 9 people and 2 groups darian gdb slv23 inesdesantiago ewilban1 floatingpoint WanderingAengus magusina ghattem Bioinformatics - CRUK SIMR bioinformatics
	A large genome center's improvements to the Illumina sequencing system [My Copy] Nature Methods, Vol. 5, No. 12. (25 November 2008), pp. 1005-1010. by Michael A. Quail, Iwanka Kozarewa, Frances Smith, et al.Aylwyn Scally, Philip J. Stephens, Richard Durbin, Harold Swerdlow, Daniel J. Turner posted to method sequencing short_read_analysis by caseybrown on 2008-11-25 21:59:42 as along with 13 people and 1 group seb1 Annab polivares katholt hagechouchin443 sandfire natstreet druvus jfr vmsr azazello clearbluespring jbhiatt JLab
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501. by Rene L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt posted to sequencing short_read_analysis by caseybrown on 2008-11-21 15:46:09 as along with 14 people n00c katholt jbhiatt jsatkosk AaronDarling floatingpoint idoerg druvus natstreet azazello iris42 nmohelli Neeperando yoonk
	SeqMap: mapping massive amount of oligonucleotides to the genome [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2395-2396. by Hui Jiang, Wing H. Wong posted to sequencing short_read_analysis by caseybrown on 2008-11-21 15:41:15 as along with 12 people Julien_Fayolle n00c cassj yupu natstreet druvus guhjy nuin Zigster pengchy cthachuk waszak
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to pac_bio sequencing short_read_analysis single_molecule by caseybrown on 2008-11-20 22:53:43 as along with 38 people and 3 groups hzoltan operon n00c kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani samjlord Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb iSEEM moernerlab Bioinformatics - CRUK
	Sequencing the nuclear genome of the extinct woolly mammoth [My Copy] Nature, Vol. 456, No. 7220. (20 November 2008), pp. 387-390. by Webb Miller, Daniela I. Drautz, Aakrosh Ratan, et al.Barbara Pusey, Ji Qi, Arthur M. Lesk, Lynn P. Tomsho, Michael D. Packard, Fangqing Zhao, Andrei Sher, Alexei Tikhonov, Brian Raney, Nick Patterson, Kerstin Lindblad-Toh, Eric S. Lander, James R. Knight, Gerard P. Irzyk, Karin M. Fredrikson, Timothy T. Harkins, Sharon Sheridan, Tom Pringle, Stephan C. Schuster posted to ancient_dna sequencing by caseybrown on 2008-11-19 20:45:06 as along with 13 people aprasad kiekyon katanaT usagi-kirin operon reyez EsepBib treangen xianjun hpaces neils djkt jbhiatt
	Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 537. by Yong Zhang, Hyunjin Shin, Jun Song, Ying Lei, X. Shirley Liu posted to chip chromatin histone_modification sequencing short_read_analysis by caseybrown on 2008-11-13 04:58:52 as along with 6 people antonkratz hagechouchin443 stubrown inesdesantiago polivares idonaldson
	Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach [My Copy] BMC Genomics, Vol. 7 (29 September 2006), 246. by Matthew N. Bainbridge, Rene L. Warren, Martin Hirst, et al.Tammy Romanuik, Thomas Zeng, Anne Go, Allen Delaney, Malachi Griffith, Matthew Hickenbotham, Vincent Magarini, Elaine R. Mardis, Marianne D. Sadar, Asim S. Siddiqui, Marco A. Marra, Steven J. M. Jones posted to 454 rna_seq sequencing by caseybrown on 2008-11-11 03:40:19 as along with 1 person usagi-kirin
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Vol. advanced online publication (2 November 2008) by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to rna_seq sequencing short_read_analysis splicing by caseybrown on 2008-11-11 03:35:05 as along with 1 group 4th_floor_JC
	DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 66-72. by Timothy J. Ley, Elaine R. Mardis, Li Ding, et al.Bob Fulton, Michael D. McLellan, Ken Chen, David Dooling, Brian H. Dunford-Shore, Sean McGrath, Matthew Hickenbotham, Lisa Cook, Rachel Abbott, David E. Larson, Dan C. Koboldt, Craig Pohl, Scott Smith, Amy Hawkins, Scott Abbott, Devin Locke, LaDeana W. Hillier, Tracie Miner, Lucinda Fulton, Vincent Magrini, Todd Wylie, Jarret Glasscock, Joshua Conyers, Nathan Sander, Xiaoqi Shi, John R. Osborne, Patrick Minx, David Gordon, Asif Chinwalla, Yu Zhao, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark Watson, Jack Baty, Jennifer Ivanovich, Sharon Heath, William D. Shannon, Rakesh Nagarajan, Matthew J. Walter, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson posted to cancer polymorphism sequencing short_read_analysis by caseybrown on 2008-11-06 18:58:18 as along with 16 people n00c tommcdonagh jonilaserson jessopher frohike jfr vmsr yupu kentsis suteedee lewista reyez pkonings rodney davfre djkt
	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane Ka-Shu K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted to polymorphism sequencing short_read_analysis by caseybrown on 2008-11-06 18:57:25 as along with 15 people rshe n00c fenghezi jonilaserson kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy pkonings djkt
	Accurate whole human genome sequencing using reversible terminator chemistry [My Copy] Nature In Nature, Vol. 456, No. 7218. (06 November 2008), pp. 53-59. posted to polymorphism sequencing short_read_analysis by caseybrown on 2008-11-06 18:56:10 as along with 30 people and 1 group jmanning2k hzoltan rshe pst gbenson giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado pkonings djkt SIMR bioinformatics
	Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains. [My Copy] PLoS genetics, Vol. 4, No. 10. (31 October 2008), e1000242. by Manching Ku, Richard P. Koche, Esther Rheinbay, et al.Eric M. Mendenhall, Mitsuhiro Endoh, Tarjei S. Mikkelsen, Aviva Presser, Chad Nusbaum, Xiaohui Xie, Andrew S. Chi, Mazhar Adli, Simon Kasif, Leon M. Ptaszek, Chad A. Cowan, Eric S. Lander, Haruhiko Koseki, Bradley E. Bernstein posted to polycomb sequencing stem_cell by caseybrown on 2008-11-04 12:27:14 as along with 5 people hkuhn RyuOgawa mchotalia inesdesantiago jernst
	Identification of genetic variants using bar-coded multiplexed sequencing [My Copy] Nature Methods, Vol. 5, No. 10. (14 September 2008), pp. 887-893. by David W. Craig, John V. Pearson, Szabolcs Szelinger, et al.Aswin Sekar, Margot Redman, Jason J. Corneveaux, Traci L. Pawlowski, Trisha Laub, Gary Nunn, Dietrich A. Stephan, Nils Homer, Matthew J. Huentelman posted to multiplex sequencing by caseybrown on 2008-10-24 22:53:05 as along with 12 people vplagnol heliopais sandfire vmsr maren brdwilde guhjy jbhiatt pdexheimer slevy03 matthewsuderman pwais
	High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi [My Copy] Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993. by Kathryn E. Holt, Julian Parkhill, Camila J. Mazzoni, et al.Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J. Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan posted to bacteria polymorphism sequencing short_read_analysis by caseybrown on 2008-10-23 01:58:09 as along with 10 people azazello felsani usagi-kirin lewista treangen abizar druvus pengchy Stew aconesa
	Probabilistic base calling of Solexa sequencing data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted to seq_images sequencing short_read_analysis by caseybrown on 2008-10-23 01:57:19 as along with 16 people and 1 group heliopais orzenil n00c dakelley jfr usagi-kirin magusina malcook natstreet druvus iris42 abizar reyez pengchy waszak nuin SIMR bioinformatics
	ZOOM! Zillions of oligos mapped [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted to sequencing short_read_analysis by caseybrown on 2008-10-23 01:39:21 as along with 20 people hzoltan gbenson bozdagd adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar APRegier natstreet druvus djkt wisdom_love umit Neeperando Stew
	Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing [My Copy] Nature Methods, Vol. 4, No. 8. (11 June 2007), pp. 651-657. by Gordon Robertson, Martin Hirst, Matthew Bainbridge, et al.Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L. Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones posted to chip cisreg sequencing stat1 by caseybrown on 2008-10-08 21:55:20 as along with 14 people and 1 group bedo absterga samanthacooper stubrown ewilban1 fpattyn polivares guhjy vega kengg ghattem slevy03 dquest raiyar Plantandetc
	Optimal spliced alignments of short sequence reads. [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch posted to rna_seq sequencing short_read_analysis splicing by caseybrown on 2008-09-24 03:01:15 as along with 13 people and 1 group ongenetics GustavoLacerda darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli cthachuk Ema Neeperando SIMR bioinformatics
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip sequencing by caseybrown on 2008-09-18 22:05:46 as along with 24 people and 2 groups hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson kengg SIMR bioinformatics Mycology
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted to chip sequencing short_read_analysis by caseybrown on 2008-08-31 20:42:30 as along with 10 people ewilban1 cassj WanderingAengus rschulz inesdesantiago aramesh2 djkt kengg Stew gdb
	Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue. [My Copy] Plant molecular biology, Vol. 66, No. 5. (March 2008), pp. 551-563. by M. Guo, S. Yang, M. Rupe, et al.B. Hu, D. R. Bickel, L. Arthur, O. Smith posted to cisreg maize polymorphism sequencing short_read_analysis transcription by caseybrown on 2008-08-18 04:15:39 as along with 1 person and 1 group dpollard RockmanLab
	Alta-Cyclic: a self-optimizing base caller for next-generation sequencing [My Copy] Nat Meth, Vol. 5, No. 8. (06 July 2008), pp. 679-682. by Yaniv Erlich, Partha P. Mitra, Melissa delaBastide, W. Richard McCombie, Gregory J. Hannon posted to method sequencing short_read_analysis by caseybrown on 2008-08-16 15:06:32 as along with 6 people n00c guhjy dakelley druvus natstreet gdb
	Microarray-based genomic selection for high-throughput resequencing. [My Copy] Nat Methods (14 October 2007) by David T T. Okou, Karyn Meltz M. Steinberg, Christina Middle, David J J. Cutler, Thomas J J. Albert, Michael E E. Zwick posted to capture method sequencing by caseybrown on 2008-08-14 21:40:45 as along with 5 people slevy03 guhjy jackjackjjj niallhaslam jo_davies
	Direct selection of human genomic loci by microarray hybridization [My Copy] Nat Meth, Vol. 4, No. 11. (14 November 2007), pp. 903-905. by Thomas J. Albert, Michael N. Molla, Donna M. Muzny, et al.Lynne Nazareth, David Wheeler, Xingzhi Song, Todd A. Richmond, Chris M. Middle, Matthew J. Rodesch, Charles J. Packard, George M. Weinstock, Richard A. Gibbs posted to capture method sequencing by caseybrown on 2008-08-14 21:40:17 as along with 8 people and 1 group jandot jbhiatt vplagnol natstreet slevy03 guhjy jackjackjjj cerami microbiology_nijmegen
	High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000139. by Anjana Srivatsan, Yi Han, Jianlan Peng, et al.Ashley K. Tehranchi, Richard Gibbs, Jue D. Wang, Rui Chen posted to sequencing short_read_analysis by caseybrown on 2008-08-04 20:21:26 as along with 7 people azazello usagi-kirin druvus lewista abizar ojabado reyez
	A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414. by Pablo Landgraf, Mirabela Rusu, Robert Sheridan, et al.Alain Sewer, Nicola Iovino, Alexei Aravin, Sébastien Pfeffer, Amanda Rice, Alice O. Kamphorst, Markus Landthaler posted to mirna sequencing by caseybrown on 2008-07-31 18:50:41 as along with 18 people and 2 groups hzoltan fishtank harel_shein frohike qfwills lp2 ealloza guhjy jfr andersbj rahulthadani xiuminyan heliopais maralena giovenko delenca yoonk gdb Bioinformatics microRNA
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M POP,, S SALZBERG, posted to sequencing short_read_analysis by caseybrown on 2008-07-31 18:48:22 as along with 36 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia yoonk druvus
	TileQC: a system for tile-based quality control of Solexa data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 250. by Peter C. Dolan, Dee R. Denver posted to method sequencing short_read_analysis by caseybrown on 2008-07-31 18:37:00 as along with 7 people heliopais n00c magusina neils reyez mdimon slevy03
	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to method sequencing by caseybrown on 2008-07-29 21:45:14 as along with 21 people and 1 group claire_jubin darian heliopais hzoltan jonilaserson n00c druvus orzenil burak woodson8 sameersoi humburg poschm polivares Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley GustavoLacerda microbiology_nijmegen
	Gene expression profiling by massively parallel sequencing [My Copy] Genome research In Genome Research, Vol. 18, No. 1. (21 January 2008), pp. 172-177. by Tatiana T. Torres, Muralidhar Metta, Birgit OttenwÃ¤lder, Christian SchlÃ¶tterer posted to 454 rna_seq sequencing transcription by caseybrown on 2008-07-08 16:30:20 as along with 20 people chriscole oannes hzoltan manduca n00c druvus daed floatingpoint inesdesantiago orzenil guhjy jfr dchughes stsaft echinotrix giovanni ghattem idonaldson ohara gracio
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to method rna_seq sequencing transcription by caseybrown on 2008-07-08 16:03:24 as along with 49 people and 3 groups sotacam AndersI zufar cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda CPI UU SIMR bioinformatics Mycology
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, et al.Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J. Penkett, Jane Rogers, Jürg Bähler posted to rna_seq sequencing transcription yeast by caseybrown on 2008-07-08 16:00:08 as along with 14 people and 1 group hzoltan manduca jmcq natstreet n00c TRHvidsten poschm michaelbarton myourshaw djkt jonathanjacobs GeeSharpMinor guhjy semrich Molecular Biology
	Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis [My Copy] Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536. by Ryan Lister, Ronan C. O'Malley, Julian Tonti-Filippini, et al.Brian D. Gregory, Charles C. Berry, Harvey A. Millar, Joseph R. Ecker posted to arabidopsis rna_seq sequencing transcription by caseybrown on 2008-07-08 15:59:17 as along with 7 people natstreet mmartin kengg megraw GeeSharpMinor jmjimenez gdb
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods In Nat Meth, Vol. 5, No. 7. (30 May 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to rna_seq sequencing solid transcription by caseybrown on 2008-07-08 15:11:54 as along with 44 people and 2 groups cajunsushi davidmam manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to rna_seq sequencing stem_cell transcription by caseybrown on 2008-07-08 15:11:14 as along with 22 people manduca hzoltan jwfoley heliopais jmanning2k stubrown cassj n00c burak natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor guhjy gdb
	Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117. by Xi Chen, Han Xu, Ping Yuan, et al.Fang Fang, Mikael Huss, Vinsensius B. Vega, Eleanor Wong, Yuriy L. Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han H. Loh, Hock Chuan C. Yeo, Zhen Xuan X. Yeo, Vipin Narang, Kunde Ramamoorthy R. Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin K. Sung, Neil D. Clarke, Chia-Lin L. Wei, Huck-Hui H. Ng posted to chip es_cell sequencing by caseybrown on 2008-07-03 23:21:06 as along with 12 people and 2 groups isimpson shikin sebastien_vigneau cassj rschulz FJ fhalbrit djkt jjray inesdesantiago kengg gdb Epigenetics CTCF
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to method rna_seq sequencing transcription by caseybrown on 2008-07-03 23:17:24 as along with 28 people and 2 groups hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs). [My Copy] Genome research, Vol. 17, No. 6. (June 2007), pp. 828-838. by Yijun Ruan, Hong Sain S. Ooi, Siew Woh W. Choo, et al.Kuo Ping P. Chiu, Xiao Dong D. Zhao, K. G. Srinivasan, Fei Yao, Chiou Yu Y. Choo, Jun Liu, Pramila Ariyaratne, Wilson G. Bin, Vladimir A. Kuznetsov, Atif Shahab, Wing-Kin K. Sung, Guillaume Bourque, Nallasivam Palanisamy, Chia-Lin L. Wei posted to cancer sequencing by caseybrown on 2008-06-12 22:04:07 as along with 4 people and 3 groups guhjy dchughes ghattem jasonflannick Bioinformatics G4ID Genetics-of-Gambling
	Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing [My Copy] Nature Genetics In Nat Genet, Vol. 40, No. 6. (27 April 2008), pp. 722-729. by Peter J. Campbell, Philip J. Stephens, Erin D. Pleasance, et al.Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W. Teague, Andrew Menzies, Ian Goodhead, Daniel J. Turner, Christopher M. Clee, Michael A. Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E. Hurles, Paul A. W. Edwards, Graham R. Bignell, Michael R. Stratton, P. Andrew Futreal posted to cancer sequencing by caseybrown on 2008-06-12 21:59:16 as along with 13 people n00c chvlyl dakelley APRegier myzhang jessopher frohike smiddha xingxu daed matthewsuderman jfr chrisamiller
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science In Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to sequencing by caseybrown on 2008-06-12 21:51:27 as along with 22 people and 2 groups torfinnnome jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr Journal picks EisenLab
	DNA sequencing: bench to bedside and beyond [My Copy] Nucleic acids research In Nucl. Acids Res., Vol. 35, No. 18. (25 September 2007), pp. 6227-6237. by Clyde A. Hutchison posted to sequencing by caseybrown on 2008-06-12 21:41:17 as along with 10 people n00c pristanna anuskap katholt jo_davies guhjy dullhunk niallhaslam hpaces rschulz
	Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. [My Copy] Genome research, Vol. 18, No. 4. (19 April 2008), pp. 610-621. by Ryan D. Morin, Michael D. O'Connor, Malachi Griffith, et al.Florian Kuchenbauer, Allen Delaney, Anna-Liisa L. Prabhu, Yongjun Zhao, Helen McDonald, Thomas Zeng, Martin Hirst, Connie J. Eaves, Marco A. Marra posted to mirna rna_seq sequencing by caseybrown on 2008-06-12 21:08:22 as along with 11 people and 2 groups hzoltan giovenko ealloza fishtank inesdesantiago GustavoLacerda heliopais stajich maralena jfr gdb microRNA Mycology
	The new paradigm of flow cell sequencing [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by Robert A. Holt, Steven J. M. Jones posted to sequencing by caseybrown on 2008-06-12 21:04:04 as along with 18 people and 1 group n00c mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali stajich reyez lp2 GustavoLacerda tharris balicea dchughes hpaces serdarbozdag jfr Mycology

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cisreg	82
eqtl	74
sequencing	62
gwas	52
transcription	48
cancer	41
molevol	41
method	39
polymorphism	37
metabolism	36
chip	35
expression_array	31
melanogaster	30
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mouse	24
network	24
yeast	21
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cnv	14
rna_seq	13
chromatin	12
qtl	11
pharmacogenetics	11
review	10
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lcl	9
genotyping	8
insulator	8
multivariate	7
chromatin_domains	7
genetics	7
glioblastoma	7
prostate	7
colon	6
barbiturate	6
rare_allele	6
hdac	6
simulans	6
derm	6
arabidopsis	6
splicing	5
gxe	5
promoter	5
cyp	5
genetic_interaction	5
worm	5
popgen	4
imputation	4
translation	4
car	4
antisense	4
indel	4
4th_floor_jc	4
nfkb	4
drug_x_expression	4
ctcf	4
ugt	4
rat	4
maize	3
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histone_modification	3
population_structure	3
lung	3
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pca	3
stem_cell	3
h3k56ac	2
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gene_duplication	2
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p300	2
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manova	1
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visualization	1
mutation	1
bacteria	1
ciona	1
hmm	1
sex	1
chemotherapy	1
recombination	1
allele_specific_expression	1
go	1
malaria	1
barley	1
confounding_variables	1
irinotecan	1
dnase_hypersensitivity	1
multiplex	1
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book	1
dog	1
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bibliography	1
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pac_bio	1
seq_images	1
stat1	1
proteomics	1
hapmap	1
olfaction	1
pxr	1
beaf	1
ecoli	1
brain	1

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