caseybrown's short_read_analysis [26 articles] Export

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	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to chip cisreg p300 short_read_analysis by caseybrown on 2009-02-12 22:08:49 as along with 23 people and 2 groups hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1845-1848. by Leighton J. Core, Joshua J. Waterfall, John T. Lis posted to antisense short_read_analysis transcription by caseybrown on 2009-02-06 13:58:20 as along with 13 people and 1 group hagechouchin443 gdb sebastien_vigneau bpcusack inesdesantiago skoch3 djkt strands Glires lp2 sandersl diaz0058 jbhiatt Koch_Lab
	Divergent transcription from active promoters. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1849-1851. by Amy C. Seila, J. Mauro Calabrese, Stuart S. Levine, et al.Gene W. Yeo, Peter B. Rahl, Ryan A. Flynn, Richard A. Young, Phillip A. Sharp posted to antisense short_read_analysis transcription by caseybrown on 2009-02-05 21:44:45 as along with 16 people guhjy gdb fenghezi tonamswish emptyhb siebert sebastien_vigneau inesdesantiago djkt jjray strands Glires lp2 sandersl diaz0058 jbhiatt
	High-resolution profiling of histone methylations in the human genome. [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Y. Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to chromatin_domains short_read_analysis by caseybrown on 2009-01-30 16:42:36 as along with 22 people and 2 groups rsaito darian tonamswish stubrown fpattyn hagechouchin443 absterga ewilban1 suizifish jochenG raylim jernst giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest JLab Plantandetc
	The antisense transcriptomes of human cells. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1855-1857. by Yiping He, Bert Vogelstein, Victor E. Velculescu, Nickolas Papadopoulos, Kenneth W. Kinzler posted to 4th_floor_jc antisense sequencing short_read_analysis transcription by caseybrown on 2009-01-16 21:11:09 as along with 20 people and 2 groups rsaito guhjy gdb maximilianh xingxu hagechouchin443 jfr fhalbrit inesdesantiago skoch3 Zephyrus djkt strands balicea shikin coela ealloza diaz0058 gfliustu jbhiatt Koch_Lab Roswell Cancer Crosstalk
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to chip sequencing short_read_analysis by caseybrown on 2008-12-05 17:20:19 as along with 9 people and 2 groups darian gdb slv23 inesdesantiago ewilban1 floatingpoint WanderingAengus magusina ghattem Bioinformatics - CRUK SIMR bioinformatics
	A large genome center's improvements to the Illumina sequencing system [My Copy] Nature Methods, Vol. 5, No. 12. (25 November 2008), pp. 1005-1010. by Michael A. Quail, Iwanka Kozarewa, Frances Smith, et al.Aylwyn Scally, Philip J. Stephens, Richard Durbin, Harold Swerdlow, Daniel J. Turner posted to method sequencing short_read_analysis by caseybrown on 2008-11-25 21:59:42 as along with 13 people and 1 group seb1 Annab polivares katholt hagechouchin443 sandfire natstreet druvus jfr vmsr azazello clearbluespring jbhiatt JLab
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501. by Rene L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt posted to sequencing short_read_analysis by caseybrown on 2008-11-21 15:46:09 as along with 14 people n00c katholt jbhiatt jsatkosk AaronDarling floatingpoint idoerg druvus natstreet azazello iris42 nmohelli Neeperando yoonk
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to chromatin histone_modification hmm short_read_analysis by caseybrown on 2008-11-21 15:42:41 as along with 8 people darian mkiyer tonamswish ewilban1 rschulz polivares djkt epigenetics
	SeqMap: mapping massive amount of oligonucleotides to the genome [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2395-2396. by Hui Jiang, Wing H. Wong posted to sequencing short_read_analysis by caseybrown on 2008-11-21 15:41:15 as along with 12 people Julien_Fayolle n00c cassj yupu natstreet druvus guhjy nuin Zigster pengchy cthachuk waszak
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to pac_bio sequencing short_read_analysis single_molecule by caseybrown on 2008-11-20 22:53:43 as along with 38 people and 3 groups hzoltan operon n00c kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani samjlord Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb iSEEM moernerlab Bioinformatics - CRUK
	Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 537. by Yong Zhang, Hyunjin Shin, Jun Song, Ying Lei, X. Shirley Liu posted to chip chromatin histone_modification sequencing short_read_analysis by caseybrown on 2008-11-13 04:58:52 as along with 6 people antonkratz hagechouchin443 stubrown inesdesantiago polivares idonaldson
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Vol. advanced online publication (2 November 2008) by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to rna_seq sequencing short_read_analysis splicing by caseybrown on 2008-11-11 03:35:05 as along with 1 group 4th_floor_JC
	DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 66-72. by Timothy J. Ley, Elaine R. Mardis, Li Ding, et al.Bob Fulton, Michael D. McLellan, Ken Chen, David Dooling, Brian H. Dunford-Shore, Sean McGrath, Matthew Hickenbotham, Lisa Cook, Rachel Abbott, David E. Larson, Dan C. Koboldt, Craig Pohl, Scott Smith, Amy Hawkins, Scott Abbott, Devin Locke, LaDeana W. Hillier, Tracie Miner, Lucinda Fulton, Vincent Magrini, Todd Wylie, Jarret Glasscock, Joshua Conyers, Nathan Sander, Xiaoqi Shi, John R. Osborne, Patrick Minx, David Gordon, Asif Chinwalla, Yu Zhao, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark Watson, Jack Baty, Jennifer Ivanovich, Sharon Heath, William D. Shannon, Rakesh Nagarajan, Matthew J. Walter, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson posted to cancer polymorphism sequencing short_read_analysis by caseybrown on 2008-11-06 18:58:18 as along with 16 people n00c tommcdonagh jonilaserson jessopher frohike jfr vmsr yupu kentsis suteedee lewista reyez pkonings rodney davfre djkt
	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane Ka-Shu K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted to polymorphism sequencing short_read_analysis by caseybrown on 2008-11-06 18:57:25 as along with 15 people rshe n00c fenghezi jonilaserson kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy pkonings djkt
	Accurate whole human genome sequencing using reversible terminator chemistry [My Copy] Nature In Nature, Vol. 456, No. 7218. (06 November 2008), pp. 53-59. posted to polymorphism sequencing short_read_analysis by caseybrown on 2008-11-06 18:56:10 as along with 30 people and 1 group jmanning2k hzoltan rshe pst gbenson giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado pkonings djkt SIMR bioinformatics
	High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi [My Copy] Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993. by Kathryn E. Holt, Julian Parkhill, Camila J. Mazzoni, et al.Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J. Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan posted to bacteria polymorphism sequencing short_read_analysis by caseybrown on 2008-10-23 01:58:09 as along with 10 people azazello felsani usagi-kirin lewista treangen abizar druvus pengchy Stew aconesa
	Probabilistic base calling of Solexa sequencing data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted to seq_images sequencing short_read_analysis by caseybrown on 2008-10-23 01:57:19 as along with 16 people and 1 group heliopais orzenil n00c dakelley jfr usagi-kirin magusina malcook natstreet druvus iris42 abizar reyez pengchy waszak nuin SIMR bioinformatics
	ZOOM! Zillions of oligos mapped [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted to sequencing short_read_analysis by caseybrown on 2008-10-23 01:39:21 as along with 20 people hzoltan gbenson bozdagd adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar APRegier natstreet druvus djkt wisdom_love umit Neeperando Stew
	Optimal spliced alignments of short sequence reads. [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch posted to rna_seq sequencing short_read_analysis splicing by caseybrown on 2008-09-24 03:01:15 as along with 13 people and 1 group ongenetics GustavoLacerda darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli cthachuk Ema Neeperando SIMR bioinformatics
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted to chip sequencing short_read_analysis by caseybrown on 2008-08-31 20:42:30 as along with 10 people ewilban1 cassj WanderingAengus rschulz inesdesantiago aramesh2 djkt kengg Stew gdb
	Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue. [My Copy] Plant molecular biology, Vol. 66, No. 5. (March 2008), pp. 551-563. by M. Guo, S. Yang, M. Rupe, et al.B. Hu, D. R. Bickel, L. Arthur, O. Smith posted to cisreg maize polymorphism sequencing short_read_analysis transcription by caseybrown on 2008-08-18 04:15:39 as along with 1 person and 1 group dpollard RockmanLab
	Alta-Cyclic: a self-optimizing base caller for next-generation sequencing [My Copy] Nat Meth, Vol. 5, No. 8. (06 July 2008), pp. 679-682. by Yaniv Erlich, Partha P. Mitra, Melissa delaBastide, W. Richard McCombie, Gregory J. Hannon posted to method sequencing short_read_analysis by caseybrown on 2008-08-16 15:06:32 as along with 6 people n00c guhjy dakelley druvus natstreet gdb
	High-Precision, Whole-Genome Sequencing of Laboratory Strains Facilitates Genetic Studies [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000139. by Anjana Srivatsan, Yi Han, Jianlan Peng, et al.Ashley K. Tehranchi, Richard Gibbs, Jue D. Wang, Rui Chen posted to sequencing short_read_analysis by caseybrown on 2008-08-04 20:21:26 as along with 7 people azazello usagi-kirin druvus lewista abizar ojabado reyez
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M POP,, S SALZBERG, posted to sequencing short_read_analysis by caseybrown on 2008-07-31 18:48:22 as along with 36 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia yoonk druvus
	TileQC: a system for tile-based quality control of Solexa data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 250. by Peter C. Dolan, Dee R. Denver posted to method sequencing short_read_analysis by caseybrown on 2008-07-31 18:37:00 as along with 7 people heliopais n00c magusina neils reyez mdimon slevy03

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cisreg	82
eqtl	74
sequencing	62
gwas	52
transcription	48
cancer	41
molevol	41
method	39
polymorphism	37
metabolism	36
chip	35
expression_array	31
melanogaster	30
short_read_analysis	26
mouse	24
network	24
yeast	21
diabetes	19
liver	14
cnv	14
rna_seq	13
chromatin	12
qtl	11
pharmacogenetics	11
review	10
mirna	9
breast	9
lcl	9
genotyping	8
insulator	8
multivariate	7
chromatin_domains	7
genetics	7
glioblastoma	7
prostate	7
colon	6
barbiturate	6
rare_allele	6
hdac	6
simulans	6
derm	6
arabidopsis	6
splicing	5
gxe	5
promoter	5
cyp	5
genetic_interaction	5
worm	5
popgen	4
imputation	4
translation	4
car	4
antisense	4
indel	4
4th_floor_jc	4
nfkb	4
drug_x_expression	4
ctcf	4
ugt	4
rat	4
maize	3
mass_spec	3
histone_modification	3
population_structure	3
lung	3
capture	3
pca	3
stem_cell	3
h3k56ac	2
vkorc1	2
xenobiotic	2
alignment	2
database	2
solid	2
es_cell	2
h3k27me3	2
lamin	2
heart_disease	2
nucleosome	2
454	2
gene_duplication	2
qtl_replication	2
phylogeny	2
p300	2
assembly	1
hsf	1
background_correction	1
trans_splicing	1
regeneration	1
manova	1
encode	1
ancient_dna	1
visualization	1
mutation	1
bacteria	1
ciona	1
hmm	1
sex	1
chemotherapy	1
recombination	1
allele_specific_expression	1
go	1
malaria	1
barley	1
confounding_variables	1
irinotecan	1
dnase_hypersensitivity	1
multiplex	1
coexpression	1
book	1
dog	1
single_molecule	1
non_coding_rna	1
crohns	1
synteny	1
bibliography	1
leukemia	1
polycomb	1
fusion_gene	1
ancestry	1
rnai	1
pac_bio	1
seq_images	1
stat1	1
proteomics	1
hapmap	1
olfaction	1
pxr	1
beaf	1
ecoli	1
brain	1

caseybrown's short_read_analysis [26 articles] Export

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