cassj's library 361 articles Export

	Functional organization of the transcriptome in human brain [My Copy] Nature Neuroscience, Vol. 11, No. 11. (12 October 2008), pp. 1271-1282. by Michael C. Oldham, Genevieve Konopka, Kazuya Iwamoto, et al.Peter Langfelder, Tadafumi Kato, Steve Horvath, Daniel H. Geschwind posted to transcriptome transcription regulation neurogenesis human by cassj on 2009-10-23 10:24:45 as along with 8 people and 1 group burak jeremymiller daforerog druvus balicea dubhelix isimpson psique KCL & UCL Bioinformatics
	RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2615-2616. by Nicole Cloonan, Qinying Xu, Geoffrey J. Faulkner, et al.Darrin F. Taylor, Dave T. P. Tang, Gabriel Kolle, Sean M. Grimmond posted to sequencing rnaseq rna-mate ngs alignment by cassj on 2009-10-13 14:31:14 as along with 14 people and 1 group hzoltan idonaldson cthachuk ethanmj GeeSharpMinor sbmontgomery shyamsg natstreet dswan druvus samgj n00c guhjy GustavoLacerda Journal picks
	Backup in gene regulatory networks explains differences between binding and knockout results [My Copy] Molecular Systems Biology, Vol. 5 (16 June 2009) by Anthony Gitter, Zehava Siegfried, Michael Klutstein, et al.Oriol Fornes, Baldo Oliva, Itamar Simon, Ziv Bar-Joseph posted to no-tag by cassj on 2009-10-12 02:16:38 as along with 6 people pablocarb biomcgary roys kiekyon jjray TRHvidsten
	integrOmics: an R package to unravel relationships between two omics datasets [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2855-2856. by Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean posted to r-project omics integromics integration by cassj on 2009-08-29 12:09:36 as along with 17 people and 1 group molnet-mna jperkins tonamswish dswan mayercd operon kshameer heliopais dolchan nuin ptrobajo sebastien_vigneau rdiaz brianb neils natstreet druvus Orengo Group Journal Picks
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to transcriptome rnaseq ngs by cassj on 2009-08-21 15:44:51 as along with 21 people hzoltan jwfoley heliopais jmanning2k stubrown n00c burak natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	R/parallel - speeding up bioinformatics analysis with R [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 September 2008), 390. by Gonzalo Vera, Ritsert Jansen, Remo Suppi posted to r-project parallel by cassj on 2009-08-21 13:40:37 as along with 26 people and 1 group Zephyrus daveGerrard sotacam walshtp dposada jfr Yanno siebert operon talponer guhjy dakelley chad_davis ptrobajo pengchy shikin robertlischke chrisamiller cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot BergmanLab
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to solexa sequencing ngs illumina by cassj on 2009-08-20 15:56:37 as along with 21 people and 4 groups heliopais hzoltan dakelley sotacam lh49 djkt rtogawa dswan torfinnnome rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares n00c aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	Generation of Functional Eyes from Pluripotent Cells [My Copy] PLoS Biol, Vol. 7, No. 8. (18 August 2009), e1000174. by Andrea S. Viczian, Eduardo C. Solessio, Yung Lyou, Michael E. Zuber posted to xenopus stem retinal progenitor cells by cassj on 2009-08-18 19:36:09 as along with 2 people tyrell_turing ericrpaquet
	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to sequencing samtools sam ngs nextgen format bam by cassj on 2009-08-17 13:55:48 as along with 27 people and 2 groups cthachuk hzoltan seb1 heliopais urgi idonaldson GustavoLacerda stubrown kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon farhat AlexBateman chrisamiller nuin n00c natstreet sandfire druvus BergmanLab Journal picks
	Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt [My Copy] Nature Protocols, Vol. 4, No. 8. (23 July 2009), pp. 1184-1191. by Steffen Durinck, Paul T. Spellman, Ewan Birney, Wolfgang Huber posted to biomart identifier mapping by cassj on 2009-08-07 03:26:09 as along with 6 people ptrobajo daforerog srp33 ericrpaquet frohike natstreet
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to alignment bwa ngs soap2 by cassj on 2009-07-27 15:11:40 as along with 26 people and 6 groups hzoltan agbiotec torfinnnome natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	VARNA: Interactive drawing and editing of the RNA secondary structure [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1974-1975. by Kevin Darty, Alain Denise, Yann Ponty posted to drawing rna software structure by cassj on 2009-07-27 15:11:06 as along with 1 group Journal picks
	Genomic Promoter Analysis Predicts Functional Transcription Factor Binding [My Copy] Advances in Bioinformatics, Vol. 2008 (2008), pp. 1-10. by J. Sunil Rao, Suresh Karanam, Colleen D. Mccabe, Carlos S. Moreno posted to confac finding motif tfbs by cassj on 2009-07-27 15:07:26 as
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted to analysis chipseq histone histonemodification ngs by cassj on 2009-07-27 15:06:12 as along with 12 people and 2 groups hzoltan hagechouchin443 ashraya stubrown guhjy humburg ewilban1 gdb inesdesantiago fenghezi ghattem polivares SIMR bioinformatics BergmanLab
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to browser genome jbrowse by cassj on 2009-07-08 16:00:37 as along with 28 people and 2 groups hzoltan darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares guhjy giovanni druvus natstreet fpattyn cisevol danmaclean timhubbard operon neils BergmanLab Journal picks
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to alignment burrows-wheeler bwa nextgen ngs sequencing by cassj on 2009-07-08 15:50:51 as along with 33 people and 4 groups lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. [My Copy] Molecular systems biology, Vol. 5 (28 April 2009) by B. C. Foat, G. D. Stormo posted to cis-regulatory rrna by cassj on 2009-07-06 15:27:32 as along with 3 people and 1 group psique dpollard TRHvidsten RockmanLab
	GAGE: generally applicable gene set enrichment for pathway analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 161. by Weijun Luo, Michael Friedman, Kerby Shedden, Kurt Hankenson, Peter Woolf posted to analysis enrichment gage geneset r-project by cassj on 2009-05-28 10:58:42 as along with 12 people and 2 groups dipenps sotacam GustavoLacerda guhjy dswan ptrobajo VGreiff thegoose vinithepooh kshameer renatomilani stajich Bioinformatics Mycology
	Computational Models of the Notch Network Elucidate Mechanisms of Context-dependent Signaling [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (22 May 2009), e1000390. by Smita Agrawal, Colin Archer, David V. Schaffer posted to computational model notch regulatory by cassj on 2009-05-25 16:39:48 as along with 2 people trfield agonzale
	Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells [My Copy] Cell Res, Vol. 18, No. 12. (0000), pp. 1177-1189. by Xiaosong Liu, Jinyan Huang, Taotao Chen, et al.Ying Wang, Shunmei Xin, Jian Li, Gang Pei, Jiuhong Kang posted to chipchip e14 embryonic factor targets yamanaka by cassj on 2009-05-25 16:27:11 as
	Web API for biology with a workflow navigation system [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W11-16. by Yeondae Kwon, Yasumasa Shigemoto, Yoshikazu Kuwana, Hideaki Sugawara posted to api ddbj web by cassj on 2009-05-25 15:28:25 as along with 8 people and 1 group pekrau tprpip dswan nuin druvus dullhunk guhjy daforerog Bioinformatics
	Stochastic sampling of the RNA structural alignment space [My Copy] Nucl. Acids Res. (8 May 2009), gkp276. by Arif O. Harmanci, Gaurav Sharma, David H. Mathews posted to alignment boltzmann centroid prediction rna structure by cassj on 2009-05-25 15:27:55 as along with 1 person rahmilale
	Web services at the European Bioinformatics Institute-2009 [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W6-10. by Hamish Mcwilliam, Franck Valentin, Mickael Goujon, et al.Weizhong Li, Menaka Narayanasamy, Jenny Martin, Teresa Miyar, Rodrigo Lopez posted to api ebi web by cassj on 2009-05-25 15:25:28 as along with 14 people and 1 group jeargle artaban421 n00c daforerog dswan guhjy hryk fgibson operon fisherp druvus alaninmcr dullhunk neils Bioinformatics
	CENTROIDFOLD: a web server for RNA secondary structure prediction. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp367. by K. Sato, M. Hamada, K. Asai, T. Mituyama posted to boltzman centrifold folding prediction rna structure web by cassj on 2009-05-25 15:24:52 as along with 1 person daforerog
	Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks [My Copy] Nucl. Acids Res., Vol. 37, No. 11. (1 June 2009), e82. by Federico Colecchia, Denise Kottwitz, Mandy Wagner, et al.Cosima V. Pfenninger, Gerald Thiel, Ingo Tamm, Carsten Peterson, Ulrike A. Nuber posted to cell factor gene network regulatory site software specific tf tissue transcription ts-rex web by cassj on 2009-05-25 15:20:43 as along with 1 person sephy
	MEME SUITE: tools for motif discovery and searching [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W202-208. by Timothy L. Bailey, Mikael Boden, Fabian A. Buske, et al.Martin Frith, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William S. Noble posted to fimo finding glam2 glam2scan gomo mast meme motif tomtom web by cassj on 2009-05-25 15:15:41 as along with 6 people suizifish jlike maximilianh natstreet idonaldson nuin
	RegAnalyst: a web interface for the analysis of regulatory motifs, networks and pathways. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp388. by Deepak Sharma, Debasisa Mohanty, Avadhesha Surolia posted to finding motif network pathway tf web by cassj on 2009-05-25 15:11:57 as along with 4 people maximilianh idonaldson guhjy renatomilani
	Cheap third-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 4., pp. 244-244. by Nicole Rusk posted to generation nanopore nextgen sequencing third by cassj on 2009-04-15 12:01:34 as along with 3 people hzoltan coela dswan
	Fine control: microRNA regulation of adult neurogenesis [My Copy] Nature Neuroscience, Vol. 12, No. 4., pp. 369-370. by Qin Shen, Sally Temple posted to adult cells mirna neural neurogenesis niche regulation stem by cassj on 2009-04-02 12:25:04 as
	A census of human transcription factors: function, expression and evolution [My Copy] Nat Rev Genet, Vol. 10, No. 4. (April 2009), pp. 252-263. by Juan M. Vaquerizas, Sarah K. Kummerfeld, Sarah A. Teichmann, Nicholas M. Luscombe posted to factor luscombe review teichmann transcription by cassj on 2009-04-02 12:24:14 as along with 11 people marti PabloMarin absterga engelhardt lwaldron daforerog druvus nuin oannes megraw idonaldson
	Expression profiling of microRNAs by deep sequencing [My Copy] Brief Bioinform, Vol. 10, No. 5. (30 March 2009), pp. bbp019-497. by Chad J. Creighton, Jeffrey G. Reid, Preethi H. Gunaratne posted to analysis mirna nextgen sequencing shortread by cassj on 2009-04-02 12:22:52 as along with 9 people and 1 group hzoltan fishtank guhjy reyez TRHvidsten heliopais natstreet druvus nuin microRNA
	New scoring schema for finding motifs in DNA Sequences [My Copy] BMC Bioinformatics, Vol. 10 (20 March 2009), 93. by Fatemeh, Bahram Goliaei posted to finding motif scoring by cassj on 2009-04-02 11:49:51 as along with 5 people and 1 group svenrahmann idonaldson maximilianh ElenaGrassi nuin cube_and_beyond
	MOM: maximum oligonucleotide mapping [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 969-970. by Hugh L. Eaves, Yuan Gao posted to alignment nextgen sequencing shortread by cassj on 2009-04-02 11:45:06 as along with 7 people seb1 jfr n00c rschulz mmartin guhjy druvus
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to alignment nextgen sequencing shortread by cassj on 2009-04-02 11:44:38 as along with 19 people and 1 group cthachuk hzoltan seb1 bozdagd adijr heliopais darian maren n00c nuin skembel Neeperando helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus iSEEM
	Chromatin remodelling factor Mll1 is essential for neurogenesis from postnatal neural stem cells [My Copy] Nature (11 February 2009) by Daniel A. Lim, Yin-Cheng Huang, Tomek Swigut, et al.Anika L. Mirick, Jose M. Garcia-Verdugo, Joanna Wysocka, Patricia Ernst, Arturo Alvarez-Buylla posted to cell chromatin epigenetics mll1 neural remodelling stem by cassj on 2009-03-27 11:43:16 as along with 1 person absterga
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to neuroscience semantic web by cassj on 2009-03-25 10:56:51 as along with 10 people and 2 groups jfr rvosa Effie guhjy druvus mikel_egana ehealthgr dullhunk allysonlister fgibson FAB-lab NaCTeM
	A systematic comparison and evaluation of biclustering methods for gene expression data [My Copy] Bioinformatics, Vol. 22, No. 9. (1 May 2006), pp. 1122-1129. by Amela Prelic, Stefan Bleuler, Philip Zimmermann, et al.Anja Wille, Peter Buhlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele, Eckart Zitzler posted to biclustering clustering expression gene by cassj on 2009-03-11 15:08:35 as along with 6 people barriot meanerelk jperkins ocs bozdagd ihpark
	Biclustering models for structured microarray data. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 2, No. 4. (c 2005), pp. 316-329. by H. L. Turner, T. C. Bailey, W. J. Krzanowski, C. A. Hemingway posted to biclustering clustering expression gene microarray by cassj on 2009-03-11 15:02:42 as
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted to chipseq insilico r r-project shortread software by cassj on 2009-03-06 10:49:39 as along with 10 people ewilban1 WanderingAengus rschulz inesdesantiago aramesh2 djkt kengg Stew gdb caseybrown
	Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117. by X. Chen, H. Xu, P. Yuan, et al.F. Fang, M. Huss, V. B. Vega, E. Wong, Y. L. Orlov, W. Zhang, J. Jiang, Y. H. Loh, H. C. Yeo, Z. X. Yeo, V. Narang, K. R. Govindarajan, B. Leong, A. Shahab, Y. Ruan, G. Bourque, W. K. Sung, N. D. Clarke, C. L. Wei, H. H. Ng posted to chipseq cmyc ctcf e2f1 es esrrb kif4 nanog nmyc oct4 smad1 sox2 stat3 tcfcp21 tfbs zfx by cassj on 2009-03-02 22:57:37 as along with 12 people and 2 groups isimpson shikin sebastien_vigneau rschulz FJ fhalbrit djkt jjray inesdesantiago caseybrown kengg gdb Epigenetics CTCF
	QVALITY: non-parametric estimation of q-values and posterior error probabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 964-966. by Lukas Käll, John D. Storey, William Stafford S. Noble posted to fdr nonparametric qvalue statistics by cassj on 2009-02-20 17:19:41 as along with 5 people guhjy jfr djkt nuin rdiaz
	AnnotationSketch: a genome annotation drawing library. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 4. (15 February 2009), pp. 533-534. by S. Steinbiss, G. Gremme, C. Schärfer, M. Mader, S. Kurtz posted to annotation drawing genometools by cassj on 2009-02-20 13:10:12 as along with 10 people and 2 groups guhjy newgene psique Cortel nuin cisevol Zephyrus jmeppley pkonings kshameer BergmanLab Roswell Cancer Crosstalk
	Prediction of RNA secondary structure using generalized centroid estimators. [My Copy] Bioinformatics (Oxford, England) (18 December 2008) by Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai posted to centroid mccaskill partition-function prediction rna structure by cassj on 2009-02-20 12:10:25 as along with 1 person mtagaya
	PASTAA: identifying transcription factors associated with sets of co-regulated genes [My Copy] Bioinformatics (9 December 2008), btn627. by Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas posted to enrichmentanalysis factor prediction tfbs transcription by cassj on 2009-02-20 12:03:55 as along with 10 people and 1 group TRHvidsten maximilianh jimineep idonaldson dswan djkt dolchan nuin natstreet druvus Bioinformatics
	Bringing Web 2.0 to bioinformatics [My Copy] Brief Bioinform, Vol. 10, No. 1. (1 January 2009), pp. 1-10. by Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend posted to bioinformatics integration pipeline web20 by cassj on 2009-02-18 12:29:40 as along with 18 people and 2 groups suribe fgibson agbiotec agomez VGreiff nuin reyez jmeppley Gaetan allysonlister guhjy A_Olympia allancho nlapalu renatomilani paszkows druvus dullhunk Dentistry logics of knowledge
	GeneTrack--a genomic data processing and visualization framework [My Copy] Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1305-1306. by Istvan Albert, Shinichiro Wachi, Cizhong Jiang, B. Franklin Pugh posted to analysis chipseq genetrack by cassj on 2009-02-17 22:37:34 as along with 6 people ewilban1 tonamswish zhouyu wisdom_love guhjy inesdesantiago
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to analysis chipseq findpeaks by cassj on 2009-02-17 22:36:57 as along with 19 people and 2 groups hzoltan darian n00c polivares idonaldson tonamswish ewilban1 humburg Thaverkamp natstreet druvus stajich WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics Mycology
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to analysis chipseq f-seq by cassj on 2009-02-17 22:36:27 as along with 18 people and 2 groups hzoltan n00c darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to analysis chipchip chipseq cisgenome by cassj on 2009-02-17 22:35:33 as along with 24 people and 3 groups hzoltan fpattyn stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to analysis chipseq peakfinder software by cassj on 2009-02-17 22:27:49 as along with 24 people and 2 groups hzoltan Vincent_Rouilly darian stubrown mkiyer humburg floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology

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